Email l.a.kelley@imperial.ac.uk Description P0A7K6 Date Thu Jan 5 11:05:50 GMT 2012 Unique Job ID b1714254c895344a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2j01t1 100.0 46 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 2 d2gycn1 100.0 100 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 3 c1nwxN_ 100.0 55 PDB header:ribosome Chain: N: PDB Molecule:ribosomal protein l19; PDBTitle: complex of the large ribosomal subunit from deinococcus2 radiodurans with abt-773 4 d2zjrm1 100.0 55 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 5 c3bboR_ 100.0 38 PDB header:ribosome Chain: R: PDB Molecule:ribosomal protein l19; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 6 c2ftcK_ 100.0 26 PDB header:ribosome Chain: K: PDB Molecule:39s ribosomal protein l19, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 7 c2e6zA_ 73.6 29 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 8 d1jb7a1 68.7 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 9 c2kvqG_ 68.5 29 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 10 c2jvvA_ 68.5 29 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 11 d1nppa2 67.1 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 12 d1zq1a1 65.5 17 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 13 c3iz5Y_ 65.2 24 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 14 d1vqot1 63.9 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 15 d1nz9a_ 58.3 36 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 16 c1zq1B_ 57.3 16 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 17 c2f1lA_ 49.1 21 PDB header:unknown function Chain: A: PDB Molecule:16s rrna processing protein; PDBTitle: crystal structure of a putative 16s ribosomal rna processing protein2 rimm (pa3744) from pseudomonas aeruginosa at 2.46 a resolution 18 c4a1cS_ 49.1 16 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 19 c1k8gC_ 45.3 18 PDB header:dna binding protein/dna Chain: C: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the n-terminal domain of oxytricha2 nova telomere end binding protein alpha subunit both3 uncomplexed and complexed with telomeric ssdna 20 c3p8bB_ 44.0 27 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 21 c1m1gB_ not modelled 41.8 26 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 22 c2dxcG_ not modelled 34.7 36 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 23 c1ph4A_ not modelled 32.1 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg 24 c1jb7A_ not modelled 32.1 21 PDB header:dna-binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex 25 d2d6fa1 not modelled 31.7 23 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 26 d1ugpb_ not modelled 28.1 45 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 27 c3cnrA_ not modelled 26.2 33 PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri 28 c3qz9D_ not modelled 26.0 45 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 29 d1hr0w_ not modelled 25.9 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 30 c2zkrt_ not modelled 24.9 40 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 31 d1v29b_ not modelled 24.8 27 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 32 c2eifA_ not modelled 24.5 16 PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii 33 d1ah9a_ not modelled 22.1 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 34 c2bi0A_ not modelled 21.4 19 PDB header:hypothetical protein Chain: A: PDB Molecule:hypothetical protein rv0216; PDBTitle: rv0216, a conserved hypothetical protein from mycobacterium2 tuberculosis that is essential for bacterial survival3 during infection, has a double hotdogfold 35 c3i4oA_ not modelled 21.0 29 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 36 d2qdyb1 not modelled 20.8 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 37 c2v43A_ not modelled 20.7 20 PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli 38 d1kl9a2 not modelled 20.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 d1qzga_ not modelled 20.1 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 40 c2fhdA_ not modelled 19.7 30 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 41 c2kytA_ not modelled 19.7 38 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 42 d1je3a_ not modelled 19.1 17 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 43 d1y14b1 not modelled 19.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 44 d1vqoq1 not modelled 18.9 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 45 d1ejxb_ not modelled 17.5 26 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 46 c3e0eA_ not modelled 17.4 35 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 47 d2bi0a2 not modelled 17.3 14 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 48 d1e9ya1 not modelled 16.9 26 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 49 d4ubpb_ not modelled 16.1 24 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 50 d1xjva1 not modelled 15.8 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 51 d2do3a1 not modelled 14.9 37 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 52 c2l66B_ not modelled 14.3 35 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 53 d2nn6i1 not modelled 14.0 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 54 d2bi0a1 not modelled 14.0 19 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 55 c2rm4A_ not modelled 14.0 21 PDB header:protein binding Chain: A: PDB Molecule:cg6311-pb; PDBTitle: solution structure of the lsm domain of dm edc3 (enhancer2 of decapping 3) 56 c4a1aP_ not modelled 13.5 19 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 57 c3izcU_ not modelled 13.4 21 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein rpl21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 58 c2wknE_ not modelled 13.4 23 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 59 c2d6fA_ not modelled 13.3 25 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 60 d1is3a_ not modelled 12.6 22 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Galectin (animal S-lectin) 61 d1bf2a1 not modelled 12.6 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 62 d2ahob2 not modelled 12.1 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 c2nn6I_ not modelled 12.0 36 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 64 c2khjA_ not modelled 11.9 26 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 65 c1e9zA_ not modelled 11.7 24 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 66 d1q46a2 not modelled 11.6 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 67 d1hh2p1 not modelled 11.4 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 68 c3qgaD_ not modelled 11.1 26 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 69 c2dbkA_ not modelled 11.0 31 PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein 70 c3u5gB_ not modelled 10.6 13 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s1-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 71 d1go3e1 not modelled 10.4 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 72 c1y43B_ not modelled 10.4 29 PDB header:hydrolase Chain: B: PDB Molecule:aspergillopepsin ii heavy chain; PDBTitle: crystal structure of aspergilloglutamic peptidase from2 aspergillus niger 73 c1xjvA_ not modelled 10.2 21 PDB header:transcription/dna Chain: A: PDB Molecule:protection of telomeres 1; PDBTitle: crystal structure of human pot1 bound to telomeric single-2 stranded dna (ttagggttag) 74 d2nn6h1 not modelled 10.1 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 75 d2ifra1 not modelled 9.9 22 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Peptidase A4 76 d1t0ha_ not modelled 9.6 25 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 77 c1jsyA_ not modelled 9.6 15 PDB header:signaling protein Chain: A: PDB Molecule:bovine arrestin-2 (full length); PDBTitle: crystal structure of bovine arrestin-2 78 d1vyva1 not modelled 9.5 19 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 79 d2hbaa1 not modelled 9.4 25 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 80 c3dm3A_ not modelled 9.3 26 PDB header:replication Chain: A: PDB Molecule:replication factor a; PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e 81 d2vv5a1 not modelled 9.3 36 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 82 c3l53F_ not modelled 9.1 31 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase; PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica 83 d1cqua_ not modelled 9.1 25 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 84 c2xhcA_ not modelled 9.1 19 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 85 c2xzm4_ not modelled 8.9 16 PDB header:ribosome Chain: 4: PDB Molecule:40s ribosomal protein s3a; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 86 c2ebpA_ not modelled 8.9 18 PDB header:cell adhesion Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sh3 domain from human sam and sh32 domain containing protein 1 87 c2k52A_ not modelled 8.7 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 88 d1gr3a_ not modelled 8.6 17 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 89 c1gr3A_ not modelled 8.6 17 PDB header:collagen Chain: A: PDB Molecule:collagen x; PDBTitle: structure of the human collagen x nc1 trimer 90 d2j01o1 not modelled 8.2 22 Fold:Ribosomal protein L14 Superfamily:Ribosomal protein L14 Family:Ribosomal protein L14 91 c1t0jA_ not modelled 8.2 25 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 92 d2je6i1 not modelled 8.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 93 c3fxhA_ not modelled 8.1 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron gene cassette protein hfx_cass2; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass2 94 d1t3la1 not modelled 7.6 45 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 95 c2eyxA_ not modelled 7.6 29 PDB header:signaling protein Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog PDBTitle: c-terminal sh3 domain of ct10-regulated kinase 96 c3qiiA_ not modelled 7.5 24 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 97 c3d0fA_ not modelled 7.5 50 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 98 c2khiA_ not modelled 7.5 33 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 99 d1vyua1 not modelled 7.2 19 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain