Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP32677
DateThu Jan 5 11:50:05 GMT 2012
Unique Job IDb0d8c2df2f47d988

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3gbgA_
Top template information
PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395
Confidence and coverage
Confidence:100.0% Coverage: 81%
228 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGEFVDTGAGATL
Secondary structure 




























SS confidence 



























































Disorder  ????























?






























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   .........70.........80.........90.........100.........110.........120
Sequence  VPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPR
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??
???


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   .........130.........140.........150.........160.........170.........180
Sequence  IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDE
Secondary structure 









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Disorder 












?
???



















?????????












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   .........190.........200.........210.........220.........230.........240
Sequence  RYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
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?






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   .........250.........260.........270.........280...
Sequence  AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
Secondary structure 


















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Disorder 































???????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3gbg chain A

3D model

Region: 36 - 271
Aligned: 228
Modelled: 236
Confidence: 100.0%
Identity: 12%
PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395

Phyre2

PDB 1d5y chain D

3D model

Region: 168 - 270
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 19%
PDB header:transcription/dna
Chain: D: PDB Molecule:rob transcription factor;
PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna

Phyre2

PDB 3oou chain A

3D model

Region: 170 - 272
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2118 protein;
PDBTitle: the structure of a protein with unkown function from listeria innocua

Phyre2

PDB 3oio chain A

3D model

Region: 164 - 275
Aligned: 112
Modelled: 112
Confidence: 99.9%
Identity: 21%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain-
PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum

Phyre2

PDB 1bl0 chain A

3D model

Region: 167 - 282
Aligned: 115
Modelled: 116
Confidence: 99.9%
Identity: 21%
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein);
PDBTitle: multiple antibiotic resistance protein (mara)/dna complex

Phyre2

PDB 3mn2 chain B

3D model

Region: 169 - 272
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 24%
PDB header:transcription regulator
Chain: B: PDB Molecule:probable arac family transcriptional regulator;
PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009

Phyre2

PDB 2k9s chain A

3D model

Region: 168 - 270
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 34%
PDB header:transcription
Chain: A: PDB Molecule:arabinose operon regulatory protein;
PDBTitle: solution structure of dna binding domain of e. coli arac

Phyre2

PDB 3mkl chain B

3D model

Region: 170 - 274
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 22%
PDB header:transcription regulator
Chain: B: PDB Molecule:hth-type transcriptional regulator gadx;
PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12

Phyre2

PDB 3lsg chain D

3D model

Region: 172 - 260
Aligned: 89
Modelled: 89
Confidence: 99.8%
Identity: 38%
PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586

Phyre2

PDB 1bl0 chain A domain 2

3D model

Region: 222 - 269
Aligned: 48
Modelled: 48
Confidence: 99.5%
Identity: 21%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: AraC type transcriptional activator

Phyre2

PDB 1d5y chain A domain 2

3D model

Region: 222 - 269
Aligned: 48
Modelled: 48
Confidence: 99.5%
Identity: 27%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: AraC type transcriptional activator

Phyre2

PDB 1bl0 chain A domain 1

3D model

Region: 167 - 219
Aligned: 53
Modelled: 53
Confidence: 99.0%
Identity: 23%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: AraC type transcriptional activator

Phyre2

PDB 1d5y chain A domain 1

3D model

Region: 168 - 219
Aligned: 52
Modelled: 52
Confidence: 99.0%
Identity: 13%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: AraC type transcriptional activator

Phyre2

PDB 1zgw chain A

3D model

Region: 153 - 225
Aligned: 71
Modelled: 73
Confidence: 98.9%
Identity: 15%
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna

Phyre2

PDB 2arc chain A

3D model

Region: 38 - 157
Aligned: 120
Modelled: 120
Confidence: 98.3%
Identity: 17%
Fold: Double-stranded beta-helix
Superfamily: Regulatory protein AraC
Family: Regulatory protein AraC

Phyre2

PDB 3ibm chain B

3D model

Region: 19 - 89
Aligned: 70
Modelled: 71
Confidence: 97.6%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila

Phyre2

PDB 3cew chain A

3D model

Region: 21 - 89
Aligned: 69
Modelled: 69
Confidence: 97.6%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized cupin protein;
PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205

Phyre2

PDB 1y3t chain A domain 1

3D model

Region: 18 - 91
Aligned: 74
Modelled: 74
Confidence: 97.4%
Identity: 20%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: Quercetin 2,3-dioxygenase-like

Phyre2

PDB 3kgz chain A

3D model

Region: 36 - 89
Aligned: 54
Modelled: 54
Confidence: 97.3%
Identity: 11%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris

Phyre2

PDB 3d82 chain A

3D model

Region: 33 - 87
Aligned: 55
Modelled: 54
Confidence: 97.2%
Identity: 20%
PDB header:metal binding protein
Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution

Phyre2

PDB 1vrb chain A domain 1

3D model

Region: 1 - 89
Aligned: 89
Modelled: 88
Confidence: 94.5%
Identity: 19%
Fold: Double-stranded beta-helix
Superfamily: Clavaminate synthase-like
Family: Asparaginyl hydroxylase-like

Phyre2
1

c3gbgA_
2

c1d5yD_
3

c3oouA_
4

c3oioA_
5

c1bl0A_
6

c3mn2B_
7

c2k9sA_
8

c3mklB_
9

c3lsgD_
10

d1bl0a2
11

d1d5ya2
12

d1bl0a1
13

d1d5ya1
14

c1zgwA_
15

d2arca_
16

c3ibmB_
17

c3cewA_
18

d1y3ta1
19

c3kgzA_
20

c3d82A_
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d1vrba1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3gbgA_



100.0 12 PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395
2c1d5yD_



99.9 19 PDB header:transcription/dna
Chain: D: PDB Molecule:rob transcription factor;
PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna
3c3oouA_



99.9 30 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2118 protein;
PDBTitle: the structure of a protein with unkown function from listeria innocua
4c3oioA_



99.9 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain-
PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum
5c1bl0A_



99.9 21 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein);
PDBTitle: multiple antibiotic resistance protein (mara)/dna complex
6c3mn2B_



99.9 24 PDB header:transcription regulator
Chain: B: PDB Molecule:probable arac family transcriptional regulator;
PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009
7c2k9sA_



99.9 34 PDB header:transcription
Chain: A: PDB Molecule:arabinose operon regulatory protein;
PDBTitle: solution structure of dna binding domain of e. coli arac
8c3mklB_



99.9 22 PDB header:transcription regulator
Chain: B: PDB Molecule:hth-type transcriptional regulator gadx;
PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12
9c3lsgD_



99.8 38 PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586
10d1bl0a2



99.5 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
11d1d5ya2



99.5 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
12d1bl0a1



99.0 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
13d1d5ya1



99.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
14c1zgwA_



98.9 15 PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
15d2arca_



98.3 17 Fold:Double-stranded beta-helix
Superfamily:Regulatory protein AraC
Family:Regulatory protein AraC
16c3ibmB_



97.6 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila
17c3cewA_



97.6 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized cupin protein;
PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205
18d1y3ta1



97.4 20 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Quercetin 2,3-dioxygenase-like
19c3kgzA_



97.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris
20c3d82A_



97.2 20 PDB header:metal binding protein
Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution
21c2i45C_



not modelled 97.2 16 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis
22c3fjsC_



not modelled 97.2 26 PDB header:biosynthetic protein
Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold;
PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution
23d1v70a_



not modelled 97.2 16 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
24c2gu9B_



not modelled 97.2 18 PDB header:immune system
Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein;
PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure
25d2pyta1



not modelled 97.1 20 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
26d1juha_



not modelled 97.1 18 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Quercetin 2,3-dioxygenase-like
27d1sfna_



not modelled 97.1 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
28c3h7yA_



not modelled 97.1 8 PDB header:biosynthetic protein
Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb;
PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form
29c3jzvA_



not modelled 97.1 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rru_a2000;
PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain.
30c2pfwB_



not modelled 97.1 16 PDB header:unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution
31d1yhfa1



not modelled 97.1 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
32c2ozjB_



not modelled 97.1 24 PDB header:unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel;
PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution
33c3lwcA_



not modelled 97.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution
34d1vj2a_



not modelled 97.0 11 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1459-like
35c3i7dB_



not modelled 97.0 22 PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase;
PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution
36c1sefA_



not modelled 97.0 7 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis
37d1sefa_



not modelled 97.0 7 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
38c2o8qA_



not modelled 97.0 18 PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution
39d1o4ta_



not modelled 96.9 20 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
40c2q30C_



not modelled 96.9 15 PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution
41c2vpvA_



not modelled 96.9 13 PDB header:cell cycle
Chain: A: PDB Molecule:protein mif2;
PDBTitle: dimerization domain of mif2p
42c3l2hD_



not modelled 96.9 14 PDB header:isomerase
Chain: D: PDB Molecule:putative sugar phosphate isomerase;
PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution
43d2phda1



not modelled 96.9 21 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Gentisate 1,2-dioxygenase-like
44c2d40C_



not modelled 96.9 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase;
PDBTitle: crystal structure of z3393 from escherichia coli o157:h7
45d1sq4a_



not modelled 96.8 16 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
46d1lr5a_



not modelled 96.8 12 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
47d1o5ua_



not modelled 96.8 21 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Hypothetical protein TM1112
48d1j58a_



not modelled 96.8 20 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
49d1y9qa2



not modelled 96.7 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Probable transcriptional regulator VC1968, C-terminal domain
50d2d40a1



not modelled 96.7 15 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Gentisate 1,2-dioxygenase-like
51c2oa2A_



not modelled 96.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2720 protein;
PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution
52c3rnsA_



not modelled 96.6 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis
53c3bcwB_



not modelled 96.6 17 PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution
54d1rc6a_



not modelled 96.6 17 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YlbA-like
55d2f4pa1



not modelled 96.5 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1287-like
56d1zvfa1



not modelled 96.5 18 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:3-hydroxyanthranilic acid dioxygenase-like
57d1j3pa_



not modelled 96.5 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Glucose-6-phosphate isomerase, GPI
58c2vqaC_



not modelled 96.4 23 PDB header:metal-binding protein
Chain: C: PDB Molecule:sll1358 protein;
PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca.
59c1cauB_



not modelled 96.4 14 PDB header:seed storage protein
Chain: B: PDB Molecule:canavalin;
PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement
60c3h8uA_



not modelled 96.3 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded
PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution
61c3bu7A_



not modelled 96.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:gentisate 1,2-dioxygenase;
PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi
62d3bu7a1



not modelled 96.3 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Gentisate 1,2-dioxygenase-like
63d1dgwa_



not modelled 96.3 25 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
64d2et1a1



not modelled 96.1 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
65d2phla2



not modelled 96.1 20 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
66d1uija1



not modelled 96.1 25 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
67d2bnma2



not modelled 96.1 16 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:TM1459-like
68c2opkC_



not modelled 96.0 23 PDB header:isomerase
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution
69d1yfua1



not modelled 96.0 18 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:3-hydroxyanthranilic acid dioxygenase-like
70d1x82a_



not modelled 96.0 16 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Glucose-6-phosphate isomerase, GPI
71c3myxA_



not modelled 95.9 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pspto_0244;
PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution
72c3ht2A_



not modelled 95.9 22 PDB header:lyase
Chain: A: PDB Molecule:remf protein;
PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus
73c1uijA_



not modelled 95.9 27 PDB header:sugar binding protein
Chain: A: PDB Molecule:beta subunit of beta conglycinin;
PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w)
74c2eaaB_



not modelled 95.9 26 PDB header:plant protein
Chain: B: PDB Molecule:7s globulin-3;
PDBTitle: crystal structure of adzuki bean 7s globulin-3
75d1uika1



not modelled 95.8 25 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
76d2b8ma1



not modelled 95.7 11 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:MJ0764-like
77c2fqpD_



not modelled 95.7 10 PDB header:metal binding protein
Chain: D: PDB Molecule:hypothetical protein bp2299;
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
78d1uika2



not modelled 95.6 15 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
79d1fxza2



not modelled 95.6 17 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
80d1uija2



not modelled 95.4 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
81d2hsga1



not modelled 95.4 22 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
82d1zrra1



not modelled 95.3 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Acireductone dioxygenase
83c3es4B_



not modelled 95.3 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold;
PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution
84c3ebrA_



not modelled 95.2 11 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized rmlc-like cupin;
PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution
85d1fxza1



not modelled 95.1 14 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
86d1sgma1



not modelled 95.1 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
87c2cauA_



not modelled 95.1 23 PDB header:plant protein
Chain: A: PDB Molecule:protein (canavalin);
PDBTitle: canavalin from jack bean
88c3gziA_



not modelled 95.1 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution
89c1sgmA_



not modelled 94.9 10 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
90c1y9qA_



not modelled 94.8 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
91c3iwfA_



not modelled 94.7 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
92d2bjca1



not modelled 94.7 18 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
93c1vi0B_



not modelled 94.5 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
94d1efaa1



not modelled 94.5 14 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
95d1vrba1



94.5 19 Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Asparaginyl hydroxylase-like
96c3o14B_



not modelled 94.5 25 PDB header:gene regulation
Chain: B: PDB Molecule:anti-ecfsigma factor, chrr;
PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution
97c3h5tA_



not modelled 94.3 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
98c3kglB_



not modelled 94.3 18 PDB header:plant protein
Chain: B: PDB Molecule:cruciferin;
PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus
99d1od5a2



not modelled 94.3 15 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Germin/Seed storage 7S protein
100d1qpza1



not modelled 94.2 22 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
101c2f07A_



not modelled 94.1 14 PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
102c3kjxD_



not modelled 94.1 23 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
103c1fxzC_



not modelled 94.0 14 PDB header:plant protein
Chain: C: PDB Molecule:glycinin g1;
PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer
104d1vi0a1



not modelled 94.0 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
105c3kscD_



not modelled 94.0 18 PDB header:plant protein
Chain: D: PDB Molecule:lega class;
PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l.
106d1ui5a1



not modelled 94.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
107d2gfna1



not modelled 93.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
108c3on4D_



not modelled 93.9 12 PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
109c2qnkA_



not modelled 93.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase;
PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase
110d1jt6a1



not modelled 93.7 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
111d2i10a1



not modelled 93.6 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
112d1j5ya1



not modelled 93.5 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
113c2oziA_



not modelled 93.5 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa4178;
PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009
114c3s7eB_



not modelled 93.5 14 PDB header:allergen
Chain: B: PDB Molecule:allergen ara h 1, clone p41b;
PDBTitle: crystal structure of ara h 1
115c2eh3A_



not modelled 93.5 12 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5
116c2ibdB_



not modelled 93.4 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
117c2gfnA_



not modelled 93.4 20 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
118c1jumB_



not modelled 93.4 12 PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca
PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
119c3iuvA_



not modelled 93.4 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
120c2bnoA_



not modelled 93.4 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0