Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	L	Q	S	Y	F	I	A	S	V	L	Y	V	M	T	P	H	A	F	A	Q	G	T	V	T	I	Y	L	P	G	E	Q	Q	T	L	S	V	G	P	V	E	N	V	V	Q	L	V	T	Q	P	Q	L	R	D	R	L	W	W
Secondary structure
SS confidence
Disorder		?	?	?														?	?	?	?	?	?	?	?												?				?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	G	A	L	L	T	D	S	A	A	K	A	K	A	L	K	D	Y	Q	H	V	M	A	Q	L	A	S	W	E	A	E	A	D	D	D	V	A	A	T	I	K	S	V	R	Q	Q	L	L	N	L	N	I	T	G	R	L	P	V	K	L
Secondary structure
SS confidence
Disorder								?	?																					?	?	?	?	?	?																?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	P	D	F	V	R	V	D	E	N	S	N	P	P	L	V	G	D	Y	T	L	Y	T	V	Q	R	P	V	T	I	T	L	L	G	A	V	S	G	A	G	Q	L	P	W	Q	A	G	R	S	V	T	D	Y	L	Q	D	H	P	R	L
Secondary structure
SS confidence
Disorder							?	?			?	?																																																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	G	A	D	K	N	N	V	M	V	I	T	P	E	G	E	T	V	V	A	P	V	A	L	W	N	K	R	H	V	E	P	P	P	G	S	Q	L	W	L	G	F	S	A	H	V	L	P	E	K	Y	A	D	L	N	D	Q	I	V	S
Secondary structure
SS confidence
Disorder		?	?	?																	?	?			?		?	?	?	?	?	?		?													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		V	L	T	Q	R	V	P	D
Secondary structure
SS confidence
Disorder						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3p42 chain D Region: 23 - 248 Aligned: 226 Modelled: 226 Confidence: 100.0% Identity: 97% PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon Phyre2 PDB 2j58 chain G Region: 22 - 242 Aligned: 171 Modelled: 177 Confidence: 99.8% Identity: 18% PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza Phyre2 PDB 2w8i chain G Region: 27 - 221 Aligned: 151 Modelled: 151 Confidence: 99.8% Identity: 19% PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. Phyre2 PDB 2fug chain 1 domain 3 Region: 150 - 195 Aligned: 43 Modelled: 46 Confidence: 81.9% Identity: 16% Fold: beta-Grasp (ubiquitin-like) Superfamily: Nqo1 middle domain-like Family: Nqo1 middle domain-like Phyre2 PDB 2fug chain A Region: 150 - 195 Aligned: 43 Modelled: 46 Confidence: 75.5% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 3ibm chain B Region: 188 - 221 Aligned: 28 Modelled: 34 Confidence: 56.1% Identity: 25% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila Phyre2 PDB 2vld chain A Region: 186 - 220 Aligned: 29 Modelled: 35 Confidence: 52.1% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi Phyre2 PDB 3ixz chain A Region: 185 - 220 Aligned: 28 Modelled: 35 Confidence: 51.7% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride Phyre2 PDB 1lr5 chain A Region: 188 - 221 Aligned: 34 Modelled: 34 Confidence: 51.7% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 3s7e chain B Region: 185 - 221 Aligned: 37 Modelled: 37 Confidence: 49.5% Identity: 19% PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 Phyre2 PDB 1uik chain A domain 2 Region: 188 - 221 Aligned: 34 Modelled: 34 Confidence: 48.7% Identity: 9% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 3b8e chain C Region: 185 - 220 Aligned: 28 Modelled: 36 Confidence: 48.1% Identity: 21% PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump Phyre2 PDB 1uik chain A domain 1 Region: 188 - 221 Aligned: 32 Modelled: 34 Confidence: 47.9% Identity: 6% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1cau chain B Region: 188 - 221 Aligned: 34 Modelled: 34 Confidence: 47.8% Identity: 12% PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement Phyre2 PDB 1uij chain A domain 1 Region: 188 - 221 Aligned: 32 Modelled: 34 Confidence: 47.5% Identity: 9% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 2cau chain A Region: 188 - 221 Aligned: 34 Modelled: 34 Confidence: 46.7% Identity: 6% PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean Phyre2 PDB 1rws chain A Region: 160 - 214 Aligned: 50 Modelled: 55 Confidence: 46.0% Identity: 22% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 2d40 chain A domain 1 Region: 188 - 221 Aligned: 29 Modelled: 34 Confidence: 44.8% Identity: 10% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 3jzv chain A Region: 188 - 221 Aligned: 28 Modelled: 32 Confidence: 44.6% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. Phyre2 PDB 1fxz chain A domain 2 Region: 188 - 221 Aligned: 34 Modelled: 34 Confidence: 43.5% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 1 c3p42D_ 2 c2j58G_ 3 c2w8iG_ 4 d2fug13 5 c2fugA_ 6 c3ibmB_ 7 c2vldA_ 8 c3ixzA_ 9 d1lr5a_ 10 c3s7eB_ 11 d1uika2 12 c3b8eC_ 13 d1uika1 14 c1cauB_ 15 d1uija1 16 c2cauA_ 17 d1rwsa_ 18 d2d40a1 19 c3jzvA_ 20 d1fxza2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3p42D_ 100.0 97 PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon 2 c2j58G_ 99.8 18 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 3 c2w8iG_ 99.8 19 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 4 d2fug13 81.9 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Nqo1 middle domain-like Family:Nqo1 middle domain-like 5 c2fugA_ 75.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 6 c3ibmB_ 56.1 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 7 c2vldA_ 52.1 28 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 8 c3ixzA_ 51.7 14 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 9 d1lr5a_ 51.7 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 10 c3s7eB_ 49.5 19 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 11 d1uika2 48.7 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 12 c3b8eC_ 48.1 21 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 13 d1uika1 47.9 6 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 14 c1cauB_ 47.8 12 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 15 d1uija1 47.5 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 16 c2cauA_ 46.7 6 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 17 d1rwsa_ 46.0 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 18 d2d40a1 44.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 19 c3jzvA_ 44.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 20 d1fxza2 43.5 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 21 d3bu7a1 not modelled 43.1 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 22 c3bu7A_ not modelled 43.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 23 c3c3vA_ not modelled 43.1 11 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 24 c3rfuC_ not modelled 42.9 13 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 25 d1uija2 not modelled 42.5 3 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 26 d1od5a2 not modelled 41.5 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 27 d1dgja2 not modelled 41.5 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 28 d1dgwa_ not modelled 41.2 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 29 c3ehkC_ not modelled 38.9 18 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 30 d1j58a_ not modelled 38.8 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 31 c1fxzC_ not modelled 37.6 11 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 32 c2oa2A_ not modelled 37.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 33 c2dgyA_ not modelled 36.1 22 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 34 c2zxeA_ not modelled 36.0 18 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 35 c3kglB_ not modelled 35.6 14 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 36 d2phla2 not modelled 35.6 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 37 c2hc8A_ not modelled 35.3 24 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 38 c2e9qA_ not modelled 35.0 12 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 39 c3kscD_ not modelled 34.8 12 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 40 d2phda1 not modelled 34.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 41 c3k2oB_ not modelled 34.7 20 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 42 c2d40C_ not modelled 34.6 11 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 43 c3uyjA_ not modelled 34.6 30 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 44 d2f4pa1 not modelled 34.1 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 45 c3kd4A_ not modelled 33.9 21 PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution 46 c2vpvA_ not modelled 33.4 25 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 47 c3qacA_ not modelled 33.3 9 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 48 c3kgzA_ not modelled 33.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 49 c1uijA_ not modelled 32.0 3 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 50 c2xdvA_ not modelled 32.0 17 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 51 c2vqaC_ not modelled 31.3 12 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 52 c3al6A_ not modelled 31.2 20 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 53 c2q30C_ not modelled 31.2 28 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 54 d1vj2a_ not modelled 31.0 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 55 d1p9ka_ not modelled 29.5 8 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 56 d2phla1 not modelled 28.9 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 57 d1vrba1 not modelled 28.6 40 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 58 c2eaaB_ not modelled 28.5 6 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 59 c2r32A_ not modelled 28.5 24 PDB header:immune system Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand PDBTitle: crystal structure of human gitrl variant 60 c2i45C_ not modelled 28.3 7 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 61 c3d82A_ not modelled 27.6 7 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 62 c3h7yA_ not modelled 27.2 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 63 d1juha_ not modelled 27.2 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 64 d1y9qa2 not modelled 27.0 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 65 d1fxza1 not modelled 26.6 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 66 c2pfwB_ not modelled 25.5 14 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 67 c3ht2A_ not modelled 25.3 17 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 68 c3cewA_ not modelled 25.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 69 c2kytA_ not modelled 25.1 33 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 70 d1yhfa1 not modelled 25.1 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 71 c3fjsC_ not modelled 25.0 25 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 72 d1h2ka_ not modelled 24.8 30 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 73 d1sq4a_ not modelled 24.4 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 74 c3l2hD_ not modelled 24.4 21 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 75 c3b8cB_ not modelled 24.4 15 PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump 76 c2gu9B_ not modelled 24.3 21 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 77 d1rm6c2 not modelled 23.8 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 78 d1l5pa_ not modelled 23.5 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 79 d1iuea_ not modelled 23.4 6 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 80 c3j08A_ not modelled 23.4 24 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 81 d1t3qa2 not modelled 23.2 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 82 d2cu3a1 not modelled 23.2 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 83 d1awda_ not modelled 22.7 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 84 c3h9iB_ not modelled 22.6 15 PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli 85 d1v70a_ not modelled 22.3 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 86 d1vlba2 not modelled 21.3 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 87 c3i7dB_ not modelled 21.2 18 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 88 c3rnsA_ not modelled 20.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 89 d1sefa_ not modelled 20.8 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 90 c1sefA_ not modelled 20.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 91 d1rc6a_ not modelled 20.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 92 c2yu1A_ not modelled 20.5 10 PDB header:oxidoreductase Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1a; PDBTitle: crystal structure of hjhdm1a complexed with a-ketoglutarate 93 c1t3qD_ not modelled 20.4 11 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 94 c3cwiA_ not modelled 19.8 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 95 d1sfna_ not modelled 19.5 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 96 c1mhsA_ not modelled 19.0 21 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 97 c1z2mA_ not modelled 18.7 16 PDB header:signaling protein Chain: A: PDB Molecule:interferon, alpha-inducible protein (clone ifi- PDBTitle: crystal structure of isg15, the interferon-induced2 ubiquitin cross reactive protein 98 c3lwcA_ not modelled 18.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 99 d1od5a1 not modelled 18.0 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0