18/01/2012 10:33:00 : INFO  : Run start: Wed Jan 18 10:32:58 GMT 2012
18/01/2012 10:33:09 : INFO  : Initialised job
18/01/2012 10:33:12 : INFO  : Renaming log file 'phyre2_20120118_103257.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/ad0e34a9618c3b7f/phyre_20120118_103257.log'
18/01/2012 10:33:14 : INFO  : Initialised job:
Sequence
>batch____
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVVQLVTQPQLRDRLWW
PGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
DPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
AGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD

18/01/2012 10:33:16 : INFO  : Checked sequence
18/01/2012 10:33:21 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 10:33:22 : INFO  : PSI-BLAST 3 iterations
18/01/2012 10:34:47 : INFO  : PSI-BLAST 5 iterations
18/01/2012 10:36:10 : INFO  : Finished PSI-BLAST
18/01/2012 10:36:13 : INFO  : Running Buildali to generate a3m file
18/01/2012 10:42:49 : INFO  : Converting to HMM
18/01/2012 10:42:52 : INFO  : Calibrating HMM
18/01/2012 10:43:13 : INFO  : Searching HMM database
18/01/2012 10:47:31 : INFO  : Finished buildali
18/01/2012 10:47:34 : INFO  : Predicting secondary structure
18/01/2012 10:47:47 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 10:47:50 : INFO  : Predicting Disordered regions
18/01/2012 10:47:58 : INFO  : Predicted Disorder (Disopred)
18/01/2012 10:48:00 : INFO  : Running memsat_svm check
18/01/2012 10:51:25 : INFO  : Globular protein
18/01/2012 10:51:26 : INFO  : Predicted Transmembrane (memsat_svm) ID 'ad0e34a9618c3b7f'
18/01/2012 10:51:29 : INFO  : Initialising fold library search
18/01/2012 10:51:35 : INFO  : Initialised search input
18/01/2012 10:51:38 : INFO  : Building Ensemble models
18/01/2012 10:51:43 : INFO  : Building hh.c3p42D_.model.1.pdb
18/01/2012 10:52:12 : INFO  : Building c3p42D_.1.pdb
18/01/2012 10:52:37 : INFO  : Building c2j58G_.2.pdb
18/01/2012 10:53:03 : INFO  : Building c2w8iG_.3.pdb
18/01/2012 10:53:28 : INFO  : Building d2fug13.4.pdb
18/01/2012 10:53:51 : INFO  : Building c2fugA_.5.pdb
18/01/2012 10:54:14 : INFO  : Building c3ibmB_.6.pdb
18/01/2012 10:54:36 : INFO  : Building c2vldA_.7.pdb
18/01/2012 10:54:58 : INFO  : Building c3ixzA_.8.pdb
18/01/2012 10:55:24 : INFO  : Building d1lr5a_.9.pdb
18/01/2012 10:55:47 : INFO  : Building c3s7eB_.10.pdb
18/01/2012 10:56:11 : INFO  : Building d1uika2.11.pdb
18/01/2012 10:56:33 : INFO  : Building c3b8eC_.12.pdb
18/01/2012 10:56:56 : INFO  : Building d1uika1.13.pdb
18/01/2012 10:57:22 : INFO  : Building c1cauB_.14.pdb
18/01/2012 10:57:47 : INFO  : Building d1uija1.15.pdb
18/01/2012 10:58:12 : INFO  : Building c2cauA_.16.pdb
18/01/2012 10:58:36 : INFO  : Building d1rwsa_.17.pdb
18/01/2012 10:59:01 : INFO  : Building d2d40a1.18.pdb
18/01/2012 10:59:23 : INFO  : Building c3jzvA_.19.pdb
18/01/2012 10:59:44 : INFO  : Building d1fxza2.20.pdb
18/01/2012 11:00:30 : INFO  : Finished HH model building
18/01/2012 11:00:35 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 11:01:37 : INFO  : html domain output complete ID 'ad0e34a9618c3b7f'
18/01/2012 11:20:01 : INFO  : Run end  : Wed Jan 18 11:19:59 GMT 2012
