Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	T	L	L	H	L	L	S	A	V	A	L	L	V	W	G	T	H	I	V	R	T	G	V	M	R	V	F	G	A	R	L	R	T	V	L	S	R	S	V	E	K	K	P	L	A	F	C	A	G	I	G	V	T	A	L	V	Q	S
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	N	A	T	T	M	L	V	T	S	F	V	A	Q	D	L	V	A	L	A	P	A	L	V	I	V	L	G	A	D	V	G	T	A	L	M	A	R	I	L	T	F	D	L	S	W	L	S	P	L	L	I	F	I	G	V	I	F	F	L
Secondary structure
SS confidence
Disorder																?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	R	K	Q	S	R	A	G	Q	L	G	R	V	G	I	G	L	G	L	I	L	L	A	L	E	L	I	V	Q	A	V	T	P	I	T	Q	A	N	G	V	Q	V	I	F	A	S	L	T	G	D	I	L	L	D	A	L	I	G	A	M
Secondary structure
SS confidence
Disorder					?	?	?																											?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	A	I	I	S	Y	S	S	L	A	A	V	L	L	T	A	T	L	T	A	A	G	I	I	S	F	P	V	A	L	C	L	V	I	G	A	N	L	G	S	G	L	L	A	M	L	N	N	S	A	A	N	A	A	A	R	R	V	A	L
Secondary structure
SS confidence
Disorder																						?	?	?	?	?																							?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	S	L	L	F	K	L	V	G	S	L	I	I	L	P	F	V	H	L	L	A	E	T	M	G	K	L	S	L	P	K	A	E	L	V	I	Y	F	H	V	F	Y	N	L	V	R	C	L	V	M	L	P	F	V	D	P	M	A	R	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		C	K	T	I	I	R	D	E	P	E	L	D	T	Q	L	R	P	K	H	L	D	V	S	A	L	D	T	P	T	L	A	L	A	N	A	A	R	E	T	L	R	I	G	D	A	M	E	Q	M	M	E	G	L	N	K	V	M	H	G	E
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?									?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		P	R	Q	E	K	E	L	R	K	L	A	D	D	I	N	V	L	Y	T	A	I	K	L	Y	L	A	R	M	P	K	E	E	L	A	E	E	E	S	R	R	W	A	E	I	I	E	M	S	L	N	L	E	Q	A	S	D	I	V	E	R
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		M	G	S	E	I	A	D	K	S	L	A	A	R	R	A	F	S	L	D	G	L	K	E	L	D	A	L	Y	E	Q	L	L	S	N	L	K	L	A	M	S	V	F	F	S	G	D	V	T	S	A	R	R	L	R	R	S	K	H	R	F
Secondary structure
SS confidence
Disorder									?			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		R	I	L	N	R	R	Y	S	H	A	H	V	D	R	L	H	Q	Q	N	V	Q	S	I	E	T	S	S	L	H	L	G	L	L	G	D	M	Q	R	L	N	S	L	F	C	S	V	A	Y	S	V	L	E	Q	P	D	E	D	E	G	R
Secondary structure
SS confidence
Disorder																		?	?	?	?		?																																	?	?	?	?	?	?
Disorder confidence
		.	.	.
Sequence		D	E	Y
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sum chain B Region: 329 - 541 Aligned: 208 Modelled: 213 Confidence: 99.9% Identity: 12% Fold: Spectrin repeat-like Superfamily: PhoU-like Family: PhoU-like Phyre2 PDB 1t72 chain A Region: 331 - 537 Aligned: 202 Modelled: 207 Confidence: 99.9% Identity: 12% Fold: Spectrin repeat-like Superfamily: PhoU-like Family: PhoU-like Phyre2 PDB 1xwm chain A Region: 327 - 539 Aligned: 208 Modelled: 213 Confidence: 99.9% Identity: 11% Fold: Spectrin repeat-like Superfamily: PhoU-like Family: PhoU-like Phyre2 PDB 2i0m chain A Region: 329 - 539 Aligned: 202 Modelled: 210 Confidence: 99.9% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phosphate transport system protein phou; PDBTitle: crystal structure of the phosphate transport system regulatory protein2 phou from streptococcus pneumoniae Phyre2 PDB 3l39 chain A Region: 339 - 530 Aligned: 181 Modelled: 192 Confidence: 99.5% Identity: 13% PDB header:phosphate-binding protein Chain: A: PDB Molecule:putative phou-like phosphate regulatory protein; PDBTitle: crystal structure of putative phou-like phosphate regulatory2 protein (bt4638) from bacteroides thetaiotaomicron vpi-54823 at 1.93 a resolution Phyre2 PDB 2olt chain B Region: 328 - 530 Aligned: 190 Modelled: 203 Confidence: 99.3% Identity: 12% PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a phou-like protein (so_3770) from shewanella2 oneidensis mr-1 at 2.00 a resolution Phyre2 PDB 1vct chain A domain 1 Region: 437 - 535 Aligned: 97 Modelled: 99 Confidence: 98.8% Identity: 18% Fold: Spectrin repeat-like Superfamily: PhoU-like Family: PhoU-like Phyre2 PDB 2bkn chain A Region: 437 - 538 Aligned: 100 Modelled: 102 Confidence: 98.4% Identity: 17% PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein ph0236; PDBTitle: structure analysis of unknown function protein Phyre2 PDB 3pja chain K Region: 346 - 487 Aligned: 142 Modelled: 142 Confidence: 59.3% Identity: 12% PDB header:hydrolase Chain: K: PDB Molecule:translin-associated protein x; PDBTitle: crystal structure of human c3po complex Phyre2 PDB 2wb7 chain B Region: 338 - 450 Aligned: 112 Modelled: 113 Confidence: 59.2% Identity: 13% PDB header:unknown function Chain: B: PDB Molecule:pt26-6p; PDBTitle: pt26-6p Phyre2 PDB 3ke4 chain B Region: 366 - 538 Aligned: 150 Modelled: 170 Confidence: 54.9% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:hypothetical cytosolic protein; PDBTitle: crystal structure of a pduo-type atp:cob(i)alamin adenosyltransferase2 from bacillus cereus Phyre2 PDB 2z5h chain B Region: 355 - 396 Aligned: 40 Modelled: 42 Confidence: 48.2% Identity: 20% PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt Phyre2 PDB 1p1j chain A domain 1 Region: 87 - 103 Aligned: 17 Modelled: 17 Confidence: 46.2% Identity: 35% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 2o8p chain A domain 1 Region: 397 - 528 Aligned: 125 Modelled: 132 Confidence: 44.2% Identity: 9% Fold: alpha-alpha superhelix Superfamily: 14-3-3 protein Family: 14-3-3 protein Phyre2 PDB 1vko chain A domain 1 Region: 87 - 103 Aligned: 17 Modelled: 17 Confidence: 43.5% Identity: 24% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 1rty chain B Region: 365 - 538 Aligned: 152 Modelled: 174 Confidence: 43.2% Identity: 18% Fold: Ferritin-like Superfamily: Cobalamin adenosyltransferase-like Family: Cobalamin adenosyltransferase Phyre2 PDB 1j1j chain A Region: 346 - 484 Aligned: 139 Modelled: 139 Confidence: 41.0% Identity: 16% Fold: alpha-alpha superhelix Superfamily: Translin Family: Translin Phyre2 PDB 1xpp chain A Region: 279 - 358 Aligned: 73 Modelled: 80 Confidence: 35.3% Identity: 10% Fold: DCoH-like Superfamily: RBP11-like subunits of RNA polymerase Family: RBP11/RpoL Phyre2 PDB 2hn1 chain A Region: 438 - 521 Aligned: 84 Modelled: 84 Confidence: 33.6% Identity: 10% PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ Phyre2 PDB 3qd8 chain M Region: 353 - 428 Aligned: 76 Modelled: 76 Confidence: 33.5% Identity: 9% PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb Phyre2 1 d1sumb_ 2 d1t72a_ 3 d1xwma_ 4 c2i0mA_ 5 c3l39A_ 6 c2oltB_ 7 d1vcta1 8 c2bknA_ 9 c3pjaK_ 10 c2wb7B_ 11 c3ke4B_ 12 c2z5hB_ 13 d1p1ja1 14 d2o8pa1 15 d1vkoa1 16 d1rtyb_ 17 d1j1ja_ 18 d1xppa_ 19 c2hn1A_ 20 c3qd8M_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1sumb_ 99.9 12 Fold:Spectrin repeat-like Superfamily:PhoU-like Family:PhoU-like 2 d1t72a_ 99.9 12 Fold:Spectrin repeat-like Superfamily:PhoU-like Family:PhoU-like 3 d1xwma_ 99.9 11 Fold:Spectrin repeat-like Superfamily:PhoU-like Family:PhoU-like 4 c2i0mA_ 99.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phosphate transport system protein phou; PDBTitle: crystal structure of the phosphate transport system regulatory protein2 phou from streptococcus pneumoniae 5 c3l39A_ 99.5 13 PDB header:phosphate-binding protein Chain: A: PDB Molecule:putative phou-like phosphate regulatory protein; PDBTitle: crystal structure of putative phou-like phosphate regulatory2 protein (bt4638) from bacteroides thetaiotaomicron vpi-54823 at 1.93 a resolution 6 c2oltB_ 99.3 12 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a phou-like protein (so_3770) from shewanella2 oneidensis mr-1 at 2.00 a resolution 7 d1vcta1 98.8 18 Fold:Spectrin repeat-like Superfamily:PhoU-like Family:PhoU-like 8 c2bknA_ 98.4 17 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein ph0236; PDBTitle: structure analysis of unknown function protein 9 c3pjaK_ 59.3 12 PDB header:hydrolase Chain: K: PDB Molecule:translin-associated protein x; PDBTitle: crystal structure of human c3po complex 10 c2wb7B_ 59.2 13 PDB header:unknown function Chain: B: PDB Molecule:pt26-6p; PDBTitle: pt26-6p 11 c3ke4B_ 54.9 11 PDB header:transferase Chain: B: PDB Molecule:hypothetical cytosolic protein; PDBTitle: crystal structure of a pduo-type atp:cob(i)alamin adenosyltransferase2 from bacillus cereus 12 c2z5hB_ 48.2 20 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt 13 d1p1ja1 46.2 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 14 d2o8pa1 44.2 9 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 15 d1vkoa1 43.5 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 16 d1rtyb_ 43.2 18 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 17 d1j1ja_ 41.0 16 Fold:alpha-alpha superhelix Superfamily:Translin Family:Translin 18 d1xppa_ 35.3 10 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RBP11/RpoL 19 c2hn1A_ 33.6 10 PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ 20 c3qd8M_ 33.5 9 PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb 21 d1i5na_ not modelled 32.4 9 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 22 c3t6gB_ not modelled 32.1 12 PDB header:signaling protein, cell adhesion Chain: B: PDB Molecule:breast cancer anti-estrogen resistance protein 1; PDBTitle: structure of the complex between nsp3 (shep1) and p130cas 23 d1s3qa1 not modelled 30.9 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 24 c2yu0A_ not modelled 30.7 25 PDB header:signaling protein Chain: A: PDB Molecule:interferon-activable protein 205; PDBTitle: solution structures of the paad_dapin domain of mus2 musculus interferon-activatable protein 205 25 c3p5nA_ not modelled 30.0 13 PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter 26 c2jd8C_ not modelled 29.8 7 PDB header:metal transport Chain: C: PDB Molecule:ferritin homolog; PDBTitle: crystal structure of the zn-soaked ferritin from the2 hyperthermophilic archaeal anaerobe pyrococcus furiosus 27 c1vkoA_ not modelled 29.4 24 PDB header:isomerase Chain: A: PDB Molecule:inositol-3-phosphate synthase; PDBTitle: crystal structure of inositol-3-phosphate synthase (ce21227) from2 caenorhabditis elegans at 2.30 a resolution 28 c2lchA_ not modelled 29.4 11 PDB header:de novo protein Chain: A: PDB Molecule:protein or38; PDBTitle: solution nmr structure of a protein with a redesigned hydrophobic2 core, northeast structural genomics consortium target or38 29 c1p1hD_ not modelled 29.3 35 PDB header:isomerase Chain: D: PDB Molecule:inositol-3-phosphate synthase; PDBTitle: crystal structure of the 1l-myo-inositol/nad+ complex 30 d1k6ka_ not modelled 29.2 14 Fold:Double Clp-N motif Superfamily:Double Clp-N motif Family:Double Clp-N motif 31 c1kmiZ_ not modelled 28.6 6 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 32 d2e74f1 not modelled 28.1 29 Fold:Single transmembrane helix Superfamily:PetM subunit of the cytochrome b6f complex Family:PetM subunit of the cytochrome b6f complex 33 d1zwwa1 not modelled 27.3 11 Fold:BAR/IMD domain-like Superfamily:BAR/IMD domain-like Family:BAR domain 34 c1p58C_ not modelled 27.2 33 PDB header:virus Chain: C: PDB Molecule:major envelope protein e; PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction 35 d2o02a1 not modelled 27.1 14 Fold:alpha-alpha superhelix Superfamily:14-3-3 protein Family:14-3-3 protein 36 c2gzdC_ not modelled 26.8 26 PDB header:protein transport Chain: C: PDB Molecule:rab11 family-interacting protein 2; PDBTitle: crystal structure of rab11 in complex with rab11-fip2 37 c2qrxA_ not modelled 25.9 9 PDB header:dna binding protein Chain: A: PDB Molecule:gm27569p; PDBTitle: crystal structure of drosophila melanogaster translin2 protein 38 d1eq1a_ not modelled 25.8 11 Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III 39 c2qr4B_ not modelled 25.7 5 PDB header:hydrolase Chain: B: PDB Molecule:peptidase m3b, oligoendopeptidase f; PDBTitle: crystal structure of oligoendopeptidase-f from enterococcus faecium 40 d1vlga_ not modelled 25.6 4 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 41 c1ha0A_ not modelled 23.9 10 PDB header:viral protein Chain: A: PDB Molecule:protein (hemagglutinin precursor); PDBTitle: hemagglutinin precursor ha0 42 d1u1ia1 not modelled 23.8 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 43 d1or4a_ not modelled 23.8 13 Fold:Globin-like Superfamily:Globin-like Family:Globins 44 c3fb2B_ not modelled 23.8 8 PDB header:structural protein Chain: B: PDB Molecule:spectrin alpha chain, brain spectrin; PDBTitle: crystal structure of the human brain alpha spectrin repeats2 15 and 16. northeast structural genomics consortium target3 hr5563a. 45 d2elba1 not modelled 23.4 11 Fold:BAR/IMD domain-like Superfamily:BAR/IMD domain-like Family:BAR domain 46 c3kp3B_ not modelled 22.3 17 PDB header:transcription regulator/antibiotic Chain: B: PDB Molecule:transcriptional regulator tcar; PDBTitle: staphylococcus epidermidis in complex with ampicillin 47 c3hnwB_ not modelled 22.2 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 48 c2kvcA_ not modelled 22.2 10 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 49 c2wr2B_ not modelled 22.1 10 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin; PDBTitle: structure of influenza h2 avian hemagglutinin with avian2 receptor 50 d2axti1 not modelled 22.0 14 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 51 d1dlca3 not modelled 21.9 9 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 52 d2d2sa1 not modelled 21.6 10 Fold:alpha-alpha superhelix Superfamily:Cullin repeat-like Family:Exocyst complex component 53 c3lk5A_ not modelled 21.6 13 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of putative geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum 54 c2nt8A_ not modelled 19.8 13 PDB header:transferase Chain: A: PDB Molecule:cobalamin adenosyltransferase; PDBTitle: atp bound at the active site of a pduo type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri 55 c1xnlA_ not modelled 19.8 44 PDB header:viral protein Chain: A: PDB Molecule:membrane protein gp37; PDBTitle: aslv fusion peptide 56 c3kyiA_ not modelled 19.8 13 PDB header:transferase Chain: A: PDB Molecule:putative histidine protein kinase; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 57 d1tqga_ not modelled 19.7 12 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 58 c2zhzC_ not modelled 19.6 14 PDB header:transferase Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative; PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis 59 d1twfk_ not modelled 19.5 24 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RBP11/RpoL 60 c3nmdA_ not modelled 19.4 17 PDB header:transferase Chain: A: PDB Molecule:cgmp dependent protein kinase; PDBTitle: crystal structure of the leucine zipper domain of cgmp dependent2 protein kinase i beta 61 c1b9uA_ not modelled 19.2 13 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 62 d1t01a1 not modelled 19.2 14 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 63 c2bbjB_ not modelled 18.7 6 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 64 c3axjB_ not modelled 18.7 14 PDB header:dna binding protein Chain: B: PDB Molecule:translin associated factor x, isoform b; PDBTitle: high resolution crystal structure of c3po 65 d256ba_ not modelled 18.5 17 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome b562 66 c2c5iT_ not modelled 18.5 6 PDB header:protein transport Chain: T: PDB Molecule:t-snare affecting a late golgi compartment PDBTitle: n-terminal domain of tlg1 complexed with n-terminus of2 vps51 in distorted conformation 67 c2ariA_ not modelled 18.4 30 PDB header:viral protein Chain: A: PDB Molecule:envelope polyprotein gp160; PDBTitle: solution structure of micelle-bound fusion domain of hiv-12 gp41 68 d1rkea1 not modelled 18.3 13 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 69 c1j1dF_ not modelled 18.3 20 PDB header:contractile protein Chain: F: PDB Molecule:troponin i; PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form 70 c3mp7B_ not modelled 18.3 33 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase subunit sece; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 71 d1io1a_ not modelled 18.2 19 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 72 c2k6sB_ not modelled 18.2 26 PDB header:protein transport Chain: B: PDB Molecule:rab11fip2 protein; PDBTitle: structure of rab11-fip2 c-terminal coiled-coil domain 73 c2p90B_ not modelled 18.1 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 74 c1ykuB_ not modelled 18.1 13 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog 75 c3hjlA_ not modelled 18.0 12 PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus 76 c1ytzI_ not modelled 18.0 11 PDB header:contractile protein Chain: I: PDB Molecule:troponin i; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 activated state 77 c3sogA_ not modelled 18.0 7 PDB header:structural protein Chain: A: PDB Molecule:amphiphysin; PDBTitle: crystal structure of the bar domain of human amphiphysin, isoform 1 78 d1xata_ not modelled 17.7 20 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 79 c3bt6B_ not modelled 17.5 14 PDB header:viral protein Chain: B: PDB Molecule:influenza b hemagglutinin (ha); PDBTitle: crystal structure of influenza b virus hemagglutinin 80 c3a0bX_ not modelled 17.5 19 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 81 c3a0bx_ not modelled 17.5 19 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of br-substituted photosystem ii complex 82 c3a0hX_ not modelled 17.5 19 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 83 c3a0hx_ not modelled 17.5 19 PDB header:electron transport Chain: X: PDB Molecule:photosystem ii reaction center protein x; PDBTitle: crystal structure of i-substituted photosystem ii complex 84 d1ciia1 not modelled 17.5 15 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 85 d1s35a2 not modelled 17.5 7 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 86 d1t6ua_ not modelled 17.5 13 Fold:Four-helical up-and-down bundle Superfamily:Nickel-containing superoxide dismutase, NiSOD Family:Nickel-containing superoxide dismutase, NiSOD 87 d2iuba1 not modelled 17.3 10 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 88 c3ci9B_ not modelled 17.3 14 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 89 c1yv0I_ not modelled 17.3 11 PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state 90 c1hf9B_ not modelled 17.3 23 PDB header:atpase inhibitor Chain: B: PDB Molecule:atpase inhibitor (mitochondrial); PDBTitle: c-terminal coiled-coil domain from bovine if1 91 c1dlcA_ not modelled 17.2 9 PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution 92 c1zxjB_ not modelled 17.2 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein mg377 homolog; PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555 93 c1t6fA_ not modelled 17.1 19 PDB header:cell cycle Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of the coiled-coil dimerization motif of2 geminin 94 c3o3nA_ not modelled 16.9 12 PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 95 c3pl4A_ not modelled 16.9 13 PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 116-343) from h. pylori 96 c3l8jA_ not modelled 16.8 12 PDB header:protein binding Chain: A: PDB Molecule:programmed cell death protein 10; PDBTitle: crystal structure of ccm3, a cerebral cavernous malformation protein2 critical for vascular integrity 97 d2etsa1 not modelled 16.8 5 Fold:Four-helical up-and-down bundle Superfamily:YppE-like Family:YppE-like 98 c1s5lx_ not modelled 16.6 19 PDB header:photosynthesis Chain: X: PDB Molecule:photosystem ii psbx protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 99 c2ah6B_ not modelled 16.5 18 PDB header:transferase Chain: B: PDB Molecule:bh1595, unknown conserved protein; PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0