PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1j1ja_

Fold library id	Fold	Superfamily	Family
d1j1ja_	alpha-alpha superhelix	Translin	Translin

Links to external resources
Added to library: Tue Mar 16 12:56:43 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S V S E I F V E L Q G F L A A E Q D I R E E I R K V V Q S L E Q T A R E I L T L L Q G V H Q G A G F Q D I P K R C L K A R E H F G T V K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S S S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H L T S L K T K F P A E Q Y Y R F H E H W R F V L Q R L V F L A A F V V Y L E T E T L V T R E A V T E I L G I E P D R E K G F H L D V E D Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
G G G G G G T S S
T
S S S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S G V L I L A S E L S R L S V N S V T A G D Y S R P L H I S T F I N E L D S G F R L L N L K N D S L R K R Y D G L K Y D V K K V E E V V Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S T T
T T

. . . . . . .

Sequence D L S I R G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	V	S	E	I	F	V	E	L	Q	G	F	L	A	A	E	Q	D	I	R	E	E	I	R	K	V	V	Q	S	L	E	Q	T	A	R	E	I	L	T	L	L	Q	G	V	H	Q	G	A	G	F	Q	D	I	P	K	R	C	L	K	A	R	E	H	F	G	T	V	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																											G	G	G	G	S	S	S	S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	L	T	S	L	K	T	K	F	P	A	E	Q	Y	Y	R	F	H	E	H	W	R	F	V	L	Q	R	L	V	F	L	A	A	F	V	V	Y	L	E	T	E	T	L	V	T	R	E	A	V	T	E	I	L	G	I	E	P	D	R	E	K	G	F	H	L	D	V	E	D	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S		G	G	G					G	G	G	T																				S	S												T				S	S	S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	G	V	L	I	L	A	S	E	L	S	R	L	S	V	N	S	V	T	A	G	D	Y	S	R	P	L	H	I	S	T	F	I	N	E	L	D	S	G	F	R	L	L	N	L	K	N	D	S	L	R	K	R	Y	D	G	L	K	Y	D	V	K	K	V	E	E	V	V	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T		S	S																	T	T													T	T
	.	.	.	.	.	.	.
Sequence	D	L	S	I	R	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T