Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76272
DateThu Jan 5 12:21:28 GMT 2012
Unique Job IDa224dc802c7002a2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1pj5a1
Top template information
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
Confidence and coverage
Confidence: 93.3% Coverage: 7%
58 residues ( 7% of your sequence) have been modelled with 93.3% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
247 residues ( 28%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSQETPASTTEAQIKNKRRISPFWLLPFIALMIASWLIWDSYQDRGNTVTIDFMSADGIV
Secondary structure 
SS confidence 
Disorder  ?????????????
?????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGV
Secondary structure 
SS confidence 
Disorder  ?
???
????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SGLDALVGGNYIGMMPGKGKEQDHFVALDTQPKYRLDNGDLMIHLQAPDLGSLNSGSLVY
Secondary structure 
SS confidence 
Disorder  ??????
?
???????????
?
?
????
??????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  FRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKVKL
Secondary structure 
SS confidence 
Disorder 
?
????
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAHSQRGVIIKLELPSGAGLTADSTPL
Secondary structure 
SS confidence 
Disorder 
?
?????????????
??????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  MYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTLLRENTRIELRNPKLSLSDANLSALLT
Secondary structure 
SS confidence 
Disorder 
?
?
?????????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GKTFELVPGDGEPRKEFVVVPGEKALLHEPDVLTLTLTAPESYGIDAGQPLILHGVQVGQ
Secondary structure 
SS confidence 
Disorder 
??
????????
?
??????????
?????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  VIDRKLTSKGVTFTVAIEPQHRELVKGDSKFVVNSRVDVKVGLDGVEFLGASASEWINGG
Secondary structure 
SS confidence 
Disorder 
??
?????
???
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  IRILPGDKGEMKASYPLYANLEKALENSLSDLPTTTVSLSAETLPDVQAGSVVLYRKFEV
Secondary structure 
SS confidence 
Disorder 
?????????????
??
?????
????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  GEVITVRPRANAFDIDLHIKPEYRNLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALK
Secondary structure 
SS confidence 
Disorder 
??
?
??????
???
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  GAISFDNLSGASASQRKGDKRILYASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDI
Secondary structure 
SS confidence 
Disorder 
??????????
?
?????????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  GQIQTLDLITARNEVQAKAVLYPEYVQTFARGGTRFSVVTPQISAAGVEHLDTILQPYIN
Secondary structure 
SS confidence 
Disorder 
???
?????????
?
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  VEPGRGNPRRDFELQEATITDSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMT
Secondary structure 
SS confidence 
Disorder 
???????????
?
??????
????????
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  LGTLSDRVMIAMRISKRYQHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAF
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........850.........860.........870.......
Sequence  ATPPGTPLAPKAQEGKHFLLQESEPKEWREWGTALPK
Secondary structure 
SS confidence 
Disorder 
????????????????
?
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1pj5 chain A domain 1

3D model

Region: 283 - 344
Aligned: 58
Modelled: 62
Confidence: 93.3%
Identity: 16%
Fold: Elongation factor/aminomethyltransferase common domain
Superfamily: Aminomethyltransferase beta-barrel domain
Family: Aminomethyltransferase beta-barrel domain

Phyre2

PDB 1v5v chain A domain 1

3D model

Region: 636 - 698
Aligned: 59
Modelled: 63
Confidence: 91.2%
Identity: 22%
Fold: Elongation factor/aminomethyltransferase common domain
Superfamily: Aminomethyltransferase beta-barrel domain
Family: Aminomethyltransferase beta-barrel domain

Phyre2

PDB 2j5u chain B

3D model

Region: 394 - 564
Aligned: 130
Modelled: 155
Confidence: 90.8%
Identity: 20%
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes

Phyre2

PDB 1wos chain A domain 1

3D model

Region: 636 - 699
Aligned: 60
Modelled: 64
Confidence: 88.2%
Identity: 15%
Fold: Elongation factor/aminomethyltransferase common domain
Superfamily: Aminomethyltransferase beta-barrel domain
Family: Aminomethyltransferase beta-barrel domain

Phyre2

PDB 1v5v chain A

3D model

Region: 636 - 698
Aligned: 59
Modelled: 63
Confidence: 88.1%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution

Phyre2

PDB 1vlo chain A domain 1

3D model

Region: 636 - 698
Aligned: 56
Modelled: 63
Confidence: 78.9%
Identity: 20%
Fold: Elongation factor/aminomethyltransferase common domain
Superfamily: Aminomethyltransferase beta-barrel domain
Family: Aminomethyltransferase beta-barrel domain

Phyre2

PDB 1yx2 chain B

3D model

Region: 161 - 213
Aligned: 53
Modelled: 53
Confidence: 76.7%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis

Phyre2

PDB 1wor chain A

3D model

Region: 636 - 701
Aligned: 61
Modelled: 66
Confidence: 70.4%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of t-protein of the glycine cleavage2 system

Phyre2

PDB 2qf4 chain A

3D model

Region: 636 - 801
Aligned: 134
Modelled: 141
Confidence: 65.5%
Identity: 15%
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)

Phyre2

PDB 3gir chain A

3D model

Region: 636 - 698
Aligned: 59
Modelled: 63
Confidence: 60.8%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae

Phyre2

PDB 3tfh chain B

3D model

Region: 636 - 698
Aligned: 59
Modelled: 63
Confidence: 59.5%
Identity: 12%
PDB header:transferase
Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein;
PDBTitle: dmsp-dependent demethylase from p. ubique - apo

Phyre2

PDB 1wsr chain A

3D model

Region: 636 - 698
Aligned: 59
Modelled: 63
Confidence: 58.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of human t-protein of glycine cleavage2 system

Phyre2

PDB 1c99 chain A

3D model

Region: 22 - 39
Aligned: 18
Modelled: 18
Confidence: 47.9%
Identity: 17%
Fold: Transmembrane helix hairpin
Superfamily: F1F0 ATP synthase subunit C
Family: F1F0 ATP synthase subunit C

Phyre2

PDB 1pj6 chain A

3D model

Region: 48 - 110
Aligned: 59
Modelled: 63
Confidence: 46.5%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid

Phyre2

PDB 1fft chain B domain 2

3D model

Region: 22 - 47
Aligned: 26
Modelled: 26
Confidence: 36.9%
Identity: 15%
Fold: Transmembrane helix hairpin
Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region
Family: Cytochrome c oxidase subunit II-like, transmembrane region

Phyre2

PDB 1txk chain A

3D model

Region: 106 - 183
Aligned: 52
Modelled: 56
Confidence: 35.2%
Identity: 25%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg

Phyre2

PDB 1jz8 chain A domain 3

3D model

Region: 159 - 227
Aligned: 65
Modelled: 69
Confidence: 33.6%
Identity: 17%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: beta-Galactosidase/glucuronidase, N-terminal domain

Phyre2

PDB 1txk chain A domain 2

3D model

Region: 106 - 183
Aligned: 52
Modelled: 56
Confidence: 33.2%
Identity: 23%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: MdoG-like

Phyre2

PDB 1vlo chain A

3D model

Region: 627 - 689
Aligned: 63
Modelled: 63
Confidence: 32.2%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution

Phyre2

PDB 1yo8 chain A

3D model

Region: 366 - 555
Aligned: 174
Modelled: 178
Confidence: 27.1%
Identity: 13%
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-2;
PDBTitle: structure of the c-terminal domain of human thrombospondin-2

Phyre2
1
d1pj5a1
2
d1v5va1
3
c2j5uB_
4
d1wosa1
5
c1v5vA_
6
d1vloa1
7
c1yx2B_
8
c1worA_
9
c2qf4A_
10
c3girA_
11
c3tfhB_
12
c1wsrA_
13
d1c99a_
14
c1pj6A_
15
d1fftb2
16
c1txkA_
17
d1jz8a3
18
d1txka2
19
c1vloA_
20
c1yo8A_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
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99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1pj5a1
93.3 16 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
2d1v5va1
91.2 22 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
3c2j5uB_
90.8 20 PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
4d1wosa1
88.2 15 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
5c1v5vA_
88.1 22 PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution
6d1vloa1
78.9 20 Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
7c1yx2B_
76.7 23 PDB header:transferase
Chain: B: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis
8c1worA_
70.4 18 PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of t-protein of the glycine cleavage2 system
9c2qf4A_
65.5 15 PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
10c3girA_
60.8 14 PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae
11c3tfhB_
59.5 12 PDB header:transferase
Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein;
PDBTitle: dmsp-dependent demethylase from p. ubique - apo
12c1wsrA_
58.0 22 PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of human t-protein of glycine cleavage2 system
13d1c99a_
47.9 17 Fold:Transmembrane helix hairpin
Superfamily:F1F0 ATP synthase subunit C
Family:F1F0 ATP synthase subunit C
14c1pj6A_
46.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
15d1fftb2
36.9 15 Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
16c1txkA_
35.2 25 PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
17d1jz8a3
33.6 17 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
18d1txka2
33.2 23 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:MdoG-like
19c1vloA_
32.2 16 PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution
20c1yo8A_
27.1 13 PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-2;
PDBTitle: structure of the c-terminal domain of human thrombospondin-2
21c3o0lB_
not modelled 26.7 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
22d1yq2a3
not modelled 26.1 13 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
23c1kqsA_
not modelled 24.8 23 PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein l2;
PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis
24c3cb0B_
not modelled 24.5 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase;
PDBTitle: cobr
25c1vlyA_
not modelled 24.2 13 PDB header:transferase
Chain: A: PDB Molecule:unknown protein from 2d-page;
PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution
26d1wgba_
not modelled 22.2 15 Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
27d1kkga_
not modelled 19.9 38 Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
28c2c1lA_
not modelled 18.8 23 PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease;
PDBTitle: structure of the bfii restriction endonuclease
29d1pa4a_
not modelled 18.2 44 Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
30c2kzfA_
not modelled 18.1 38 PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosome-binding factor a;
PDBTitle: solution nmr structure of the thermotoga maritima protein tm0855 a2 putative ribosome binding factor a
31c2r6vA_
not modelled 18.0 15 PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein ph0856;
PDBTitle: crystal structure of fmn-binding protein (np_142786.1) from pyrococcus2 horikoshii at 1.35 a resolution
32c2r39A_
not modelled 17.2 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:fixg-related protein;
PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus
33c2r0xA_
not modelled 16.9 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
34d2dyja1
not modelled 16.6 34 Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
35d1bhua_
not modelled 15.8 20 Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Streptomyces metalloproteinase inhibitor, SMPI
36d1v58a2
not modelled 15.2 21 Fold:Cystatin-like
Superfamily:DsbC/DsbG N-terminal domain-like
Family:DsbC/DsbG N-terminal domain-like
37c3fljA_
not modelled 14.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a
PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution
38c1w2tE_
not modelled 14.4 10 PDB header:hydrolase
Chain: E: PDB Molecule:beta fructosidase;
PDBTitle: beta-fructosidase from thermotoga maritima in complex with2 raffinose
39c2kebA_
not modelled 14.4 11 PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
40c2zjbB_
not modelled 13.3 35 PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
41d1josa_
not modelled 12.4 35 Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
42c3o5aB_
not modelled 12.3 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:diheme cytochrome c napb;
PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids
43c2p0yA_
not modelled 12.1 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein lp_0780;
PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr6
44c2d38A_
not modelled 11.8 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical nadh-dependent fmn oxidoreductase;
PDBTitle: the crystal structure of flavin reductase hpac complexed with nadp+
45d1whva_
not modelled 11.6 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
46d1v5wa_
not modelled 11.1 35 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
47c1pznG_
not modelled 10.9 43 PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
48d1pzna2
not modelled 10.6 43 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
49d2e7ga1
not modelled 10.6 19 Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
50c2w0mA_
not modelled 10.5 43 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
51d1rz0a_
not modelled 10.4 18 Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
52c3nmbA_
not modelled 10.3 36 PDB header:hydrolase
Chain: A: PDB Molecule:putative sugar hydrolase;
PDBTitle: crystal structure of a putative sugar hydrolase (bacova_03189) from2 bacteroides ovatus at 2.40 a resolution
53d2axte1
not modelled 9.8 30 Fold:Single transmembrane helix
Superfamily:Cytochrome b559 subunits
Family:Cytochrome b559 subunits
54c3hbkA_
not modelled 9.7 36 PDB header:hydrolase
Chain: A: PDB Molecule:putative glycosyl hydrolase;
PDBTitle: crystal structure of putative glycosyl hydrolase, was domain of2 unknown function (duf1080) (yp_001302580.1) from parabacteroides3 distasonis atcc 8503 at 2.36 a resolution
55c3uaiA_
not modelled 9.7 18 PDB header:isomerase/chaperone
Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4;
PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
56c3izcN_
not modelled 9.6 22 PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
57c2jqoA_
not modelled 9.6 13 PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein yoba;
PDBTitle: nmr solution structure of bacillus subtilis yoba 21-120:2 northeast structural genomics consortium target sr547
58c1pkvB_
not modelled 9.4 22 PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin
59c1pkvA_
not modelled 9.4 22 PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin
60c3h3lB_
not modelled 9.2 23 PDB header:hydrolase
Chain: B: PDB Molecule:putative sugar hydrolase;
PDBTitle: crystal structure of putative sugar hydrolase (yp_001304206.1) from2 parabacteroides distasonis atcc 8503 at 1.59 a resolution
61d1mvqa_
not modelled 9.1 23 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Legume lectins
62d2evra1
not modelled 8.6 25 Fold:SH3-like barrel
Superfamily:Prokaryotic SH3-related domain
Family:Spr N-terminal domain-like
63d1i8da1
not modelled 8.6 22 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Riboflavin synthase
64d2cp6a1
not modelled 8.5 15 Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
65d2i00a1
not modelled 8.5 11 Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
66d1h9wa_
not modelled 8.4 20 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Legume lectins
67d2i1qa2
not modelled 8.3 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
68d2cu6a1
not modelled 8.3 14 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
69d1zy9a1
not modelled 8.3 43 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:YicI N-terminal domain-like
70d1zq1a1
not modelled 8.3 21 Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
71d2hv2a1
not modelled 8.2 12 Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
72c1icfB_
not modelled 8.1 38 PDB header:hydrolase
Chain: B: PDB Molecule:protein (cathepsin l: light chain);
PDBTitle: crystal structure of mhc class ii associated p41 ii fragment in2 complex with cathepsin l
73d2pmaa1
not modelled 8.0 16 Fold:Acid proteases
Superfamily:Acid proteases
Family:LPG0085-like
74d2cb2a1
not modelled 7.9 25 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:SOR-like
75c3k87B_
not modelled 7.9 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1;
PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex
76c3u1xA_
not modelled 7.8 27 PDB header:hydrolase
Chain: A: PDB Molecule:putative glycosyl hydrolase;
PDBTitle: crystal structure of a putative glycosyl hydrolase (bdi_1869) from2 parabacteroides distasonis atcc 8503 at 1.70 a resolution
77c3khsB_
not modelled 7.8 21 PDB header:hydrolase
Chain: B: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase
78d1vm8a_
not modelled 7.6 26 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
79c2z8nB_
not modelled 7.6 25 PDB header:lyase
Chain: B: PDB Molecule:27.5 kda virulence protein;
PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase
80d2cnaa_
not modelled 7.5 22 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Legume lectins
81d1mzaa_
not modelled 7.5 22 Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Eukaryotic proteases
82d1tf7a2
not modelled 7.5 43 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
83c2l66B_
not modelled 7.4 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, abrb family;
PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
84c3nfgG_
not modelled 7.4 10 PDB header:transcription
Chain: G: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: crystal structure of dimerization module of rna polymerase i2 subcomplex a49/a34.5
85d1g7sa1
not modelled 7.3 16 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
86d1o7ia_
not modelled 7.3 23 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
87c1x31A_
not modelled 7.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
88c2v31A_
not modelled 7.3 15 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-activating enzyme e1 x;
PDBTitle: structure of first catalytic cysteine half-domain of mouse2 ubiquitin-activating enzyme
89d1eu3a1
not modelled 7.2 19 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
90d2uubq1
not modelled 7.2 7 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
91c2xlfA_
not modelled 7.2 12 PDB header:metal binding protein
Chain: A: PDB Molecule:sll1785 protein;
PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet)
92c2eqnA_
not modelled 7.0 16 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein loc92345;
PDBTitle: solution structure of the naf1 domain of hypothetical2 protein bc008207 [homo sapiens]
93c4a19F_
not modelled 7.0 19 PDB header:ribosome
Chain: F: PDB Molecule:rpl14;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
94c2kncA_
not modelled 6.9 19 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
95c1jniA_
not modelled 6.8 0 PDB header:oxidoreductase
Chain: A: PDB Molecule:diheme cytochrome c napb;
PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae.
96d1jnia_
not modelled 6.8 0 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
97c1cn3F_
not modelled 6.8 43 PDB header:viral protein
Chain: F: PDB Molecule:fragment of coat protein vp2;
PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry
98c2ztsB_
not modelled 6.7 43 PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
99d1iaua_
not modelled 6.7 14 Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Eukaryotic proteases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0