Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	N	I	Q	L	A	H	G	S	G	G	Q	A	M	Q	Q	L	I	N	S	L	F	M	E	A	F	A	N	P	W	L	A	E	Q	E	D	Q	A	R	L	D	L	A	Q	L	V	A	E	G	D	R	L	A	F	S	T	D	S	Y
Secondary structure
SS confidence
Disorder		?	?	?			?	?		?	?	?	?			?															?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	D	P	L	F	F	P	G	G	N	I	G	K	L	A	I	C	G	T	A	N	D	V	A	V	S	G	A	I	P	R	Y	L	S	C	G	F	I	L	E	E	G	L	P	M	E	T	L	K	A	V	V	T	S	M	A	E	T	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	A	A	G	I	A	I	V	T	G	D	T	K	V	V	Q	R	G	A	V	D	K	L	F	I	N	T	A	G	M	G	A	I	P	A	N	I	H	W	G	A	Q	T	L	T	A	G	D	V	L	L	V	S	G	T	L	G	D	H	G
Secondary structure
SS confidence
Disorder																	?																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	T	I	L	N	L	R	E	Q	L	G	L	D	G	E	L	V	S	D	C	A	V	L	T	P	L	I	Q	T	L	R	D	I	P	G	V	K	A	L	R	D	A	T	R	G	G	V	N	A	V	V	H	E	F	A	A	A	C	G	C
Secondary structure
SS confidence
Disorder								?	?		?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	I	E	L	S	E	A	A	L	P	V	K	P	A	V	R	G	V	C	E	L	L	G	L	D	A	L	N	F	A	N	E	G	K	L	V	I	A	V	E	R	N	A	A	E	Q	V	L	A	A	L	H	S	H	P	L	G	K	D	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Sequence		A	L	I	G	E	V	V	E	R	K	G	V	R	L	A	G	L	Y	G	V	K	R	T	L	D	L	P	H	A	E	P	L	P	R	I	C
Secondary structure
SS confidence
Disorder																																				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rb9 chain D Region: 14 - 336 Aligned: 323 Modelled: 323 Confidence: 100.0% Identity: 98% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype Phyre2 PDB 2z1t chain A Region: 19 - 336 Aligned: 312 Modelled: 318 Confidence: 100.0% Identity: 48% PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype Phyre2 PDB 2z1e chain A Region: 33 - 332 Aligned: 291 Modelled: 300 Confidence: 100.0% Identity: 40% PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) Phyre2 PDB 3fd5 chain B Region: 1 - 326 Aligned: 314 Modelled: 326 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp Phyre2 PDB 2btu chain B Region: 12 - 312 Aligned: 293 Modelled: 301 Confidence: 100.0% Identity: 21% PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. Phyre2 PDB 3mcq chain A Region: 18 - 321 Aligned: 290 Modelled: 304 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution Phyre2 PDB 2zod chain B Region: 12 - 314 Aligned: 290 Modelled: 303 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus Phyre2 PDB 1cli chain D Region: 17 - 311 Aligned: 290 Modelled: 295 Confidence: 100.0% Identity: 19% PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution Phyre2 PDB 2zau chain B Region: 24 - 314 Aligned: 274 Modelled: 291 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus Phyre2 PDB 3c9u chain B Region: 12 - 332 Aligned: 292 Modelled: 321 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp Phyre2 PDB 2z01 chain A Region: 17 - 316 Aligned: 285 Modelled: 300 Confidence: 100.0% Identity: 24% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus Phyre2 PDB 1vqv chain B Region: 16 - 326 Aligned: 276 Modelled: 311 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus Phyre2 PDB 2v9y chain A Region: 40 - 316 Aligned: 273 Modelled: 277 Confidence: 100.0% Identity: 21% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase Phyre2 PDB 3m84 chain A Region: 12 - 314 Aligned: 300 Modelled: 303 Confidence: 100.0% Identity: 15% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis Phyre2 PDB 2yxz chain A Region: 12 - 317 Aligned: 288 Modelled: 302 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 Phyre2 PDB 3ac6 chain A Region: 10 - 329 Aligned: 288 Modelled: 300 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus Phyre2 PDB 2hs0 chain A Region: 10 - 329 Aligned: 283 Modelled: 312 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp Phyre2 PDB 3d54 chain I Region: 7 - 329 Aligned: 286 Modelled: 321 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima Phyre2 PDB 3mdo chain B Region: 48 - 323 Aligned: 269 Modelled: 276 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution Phyre2 PDB 3kiz chain A Region: 49 - 321 Aligned: 265 Modelled: 272 Confidence: 100.0% Identity: 19% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution Phyre2 1 c2rb9D_ 2 c2z1tA_ 3 c2z1eA_ 4 c3fd5B_ 5 c2btuB_ 6 c3mcqA_ 7 c2zodB_ 8 c1cliD_ 9 c2zauB_ 10 c3c9uB_ 11 c2z01A_ 12 c1vqvB_ 13 c2v9yA_ 14 c3m84A_ 15 c2yxzA_ 16 c3ac6A_ 17 c2hs0A_ 18 c3d54I_ 19 c3mdoB_ 20 c3kizA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2rb9D_ 100.0 98 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype 2 c2z1tA_ 100.0 48 PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype 3 c2z1eA_ 100.0 40 PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) 4 c3fd5B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp 5 c2btuB_ 100.0 21 PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. 6 c3mcqA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution 7 c2zodB_ 100.0 13 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 8 c1cliD_ 100.0 19 PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution 9 c2zauB_ 100.0 14 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus 10 c3c9uB_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp 11 c2z01A_ 100.0 24 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus 12 c1vqvB_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus 13 c2v9yA_ 100.0 21 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase 14 c3m84A_ 100.0 15 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis 15 c2yxzA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 16 c3ac6A_ 100.0 20 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus 17 c2hs0A_ 100.0 17 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp 18 c3d54I_ 100.0 17 PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima 19 c3mdoB_ 100.0 20 PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution 20 c3kizA_ 100.0 19 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 21 c1t3tA_ not modelled 100.0 17 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 22 d2z1ea2 not modelled 100.0 36 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 23 d3c9ua1 not modelled 100.0 17 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 24 d1clia1 not modelled 100.0 18 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 25 d2zoda2 not modelled 100.0 13 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 26 d1clib1 not modelled 100.0 18 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 27 d2z1ea1 not modelled 100.0 48 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 28 d3c9ua2 not modelled 100.0 25 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 29 d2zoda1 not modelled 99.9 15 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 30 d2zaua1 not modelled 99.9 14 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 31 d1clia2 not modelled 99.9 20 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 32 d1vk3a3 not modelled 99.9 18 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 33 d1t3ta6 not modelled 99.9 17 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 34 d1vk3a2 not modelled 99.9 10 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 35 d1vk3a1 not modelled 99.8 16 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 36 d1t3ta7 not modelled 99.8 21 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 37 d1t3ta4 not modelled 99.2 15 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 38 d1t3ta5 not modelled 98.9 15 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 39 d3dhxa1 not modelled 86.8 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 40 d1to3a_ not modelled 71.8 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 41 d2qrra1 not modelled 56.5 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 42 d1w5fa2 not modelled 46.7 9 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 43 c3g85A_ not modelled 37.0 0 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 44 c3jrkG_ not modelled 30.7 16 PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes 45 d2qswa1 not modelled 28.1 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 46 c3shwA_ not modelled 27.5 18 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 47 d2csua1 not modelled 26.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 48 c3d02A_ not modelled 25.8 0 PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution 49 d1jyea_ not modelled 25.5 21 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 50 c1jyeA_ not modelled 25.5 21 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 51 c3rotA_ not modelled 25.4 7 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 52 c3gbvB_ not modelled 24.9 16 PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis 53 c3eggC_ not modelled 23.3 14 PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin 54 c3o1hB_ not modelled 23.0 18 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 55 d1oi7a1 not modelled 23.0 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 56 c3mizB_ not modelled 23.0 21 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli 57 c2qjhH_ not modelled 21.6 15 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 58 c2vk2A_ not modelled 21.4 24 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 59 c3qi7A_ not modelled 20.0 18 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 60 c2hqbA_ not modelled 19.3 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 61 c3d8uA_ not modelled 19.2 18 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 62 c2zplA_ not modelled 18.4 22 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain a 63 c3cs3A_ not modelled 17.4 6 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 64 c3diwB_ not modelled 17.4 15 PDB header:signaling protein/cell adhesion Chain: B: PDB Molecule:tax1-binding protein 3; PDBTitle: c-terminal beta-catenin bound tip-1 structure 65 d1fnda1 not modelled 17.3 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 66 c3h75A_ not modelled 17.2 15 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 67 d1q3oa_ not modelled 17.2 9 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 68 d1tjya_ not modelled 17.0 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 69 c3lukB_ not modelled 16.9 20 PDB header:rna binding protein Chain: B: PDB Molecule:protein argonaute-2; PDBTitle: crystal structure of mid domain from hago2 70 d1x5qa1 not modelled 16.9 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 71 c2q6tB_ not modelled 16.7 13 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 72 c3fokH_ not modelled 16.4 19 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115 73 c3jy6B_ not modelled 15.7 9 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 74 d1ekqa_ not modelled 15.2 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 75 d2dria_ not modelled 15.1 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 76 c3g1wB_ not modelled 15.0 9 PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans 77 c3k1rA_ not modelled 14.3 19 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 78 d1gsoa2 not modelled 14.1 39 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 79 c3l4fD_ not modelled 13.5 9 PDB header:signaling protein/protein binding Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein PDBTitle: crystal structure of betapix coiled-coil domain and shank2 pdz complex 80 c3ksmA_ not modelled 13.4 16 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 81 c3egcF_ not modelled 13.1 18 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 82 d1htwa_ not modelled 13.1 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:YjeE-like 83 d1e8ca2 not modelled 12.9 42 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 84 d1whaa_ not modelled 12.8 22 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 85 c3kkeA_ not modelled 12.8 9 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 86 c2rjoA_ not modelled 12.8 15 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 87 c3l49D_ not modelled 12.7 6 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 88 d1kona_ not modelled 12.6 15 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 89 d1jx6a_ not modelled 12.5 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 90 d1udxa3 not modelled 12.2 29 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 91 d2ok5a4 not modelled 11.9 29 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 92 c3dzvB_ not modelled 11.9 24 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 93 d2nzug1 not modelled 11.5 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 94 d1ep3b1 not modelled 11.5 38 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 95 c3h5oB_ not modelled 11.4 15 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 96 d2byga1 not modelled 11.1 28 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 97 c3l6uA_ not modelled 11.1 15 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 98 c3bilA_ not modelled 11.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 99 c2ka9A_ not modelled 10.9 15 PDB header:cell adhesion Chain: A: PDB Molecule:disks large homolog 4; PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0