Phyre 2 Results for P24193

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Email | l.a.kelley@imperial.ac.uk
Description | P24193
Date | Thu Jan 5 11:41:07 GMT 2012
Unique Job ID | 9f06777787f86998

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2rb9D_
Top template information
PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype
Confidence and coverage
Confidence: | 100.0% | Coverage: | 96%
323 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | N | I | Q | L | A | H | G | S | G | G | Q | A | M | Q | Q | L | I | N | S | L | F | M | E | A | F | A | N | P | W | L | A | E | Q | E | D | Q | A | R | L | D | L | A | Q | L | V | A | E | G | D | R | L | A | F | S | T | D | S | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  | ? | ? |  | ? | ? | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | I | D | P | L | F | F | P | G | G | N | I | G | K | L | A | I | C | G | T | A | N | D | V | A | V | S | G | A | I | P | R | Y | L | S | C | G | F | I | L | E | E | G | L | P | M | E | T | L | K | A | V | V | T | S | M | A | E | T | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | R | A | A | G | I | A | I | V | T | G | D | T | K | V | V | Q | R | G | A | V | D | K | L | F | I | N | T | A | G | M | G | A | I | P | A | N | I | H | W | G | A | Q | T | L | T | A | G | D | V | L | L | V | S | G | T | L | G | D | H | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | T | I | L | N | L | R | E | Q | L | G | L | D | G | E | L | V | S | D | C | A | V | L | T | P | L | I | Q | T | L | R | D | I | P | G | V | K | A | L | R | D | A | T | R | G | G | V | N | A | V | V | H | E | F | A | A | A | C | G | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | G | I | E | L | S | E | A | A | L | P | V | K | P | A | V | R | G | V | C | E | L | L | G | L | D | A | L | N | F | A | N | E | G | K | L | V | I | A | V | E | R | N | A | A | E | Q | V | L | A | A | L | H | S | H | P | L | G | K | D | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | .
Sequence |  | A | L | I | G | E | V | V | E | R | K | G | V | R | L | A | G | L | Y | G | V | K | R | T | L | D | L | P | H | A | E | P | L | P | R | I | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2rb9D_ |

### PDB 2rb9 chain D

Region: 14 - 336
Aligned: 323
Modelled: 323
Confidence: 100.0%
Identity: 98%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hype protein;
PDBTitle: crystal structure of e.coli hype

Phyre2
2 |
| c2z1tA_ |

### PDB 2z1t chain A

Region: 19 - 336
Aligned: 312
Modelled: 318
Confidence: 100.0%
Identity: 48%
PDB header:lyase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hydrogenase maturation protein hype

Phyre2
3 |
| c2z1eA_ |

### PDB 2z1e chain A

Region: 33 - 332
Aligned: 291
Modelled: 300
Confidence: 100.0%
Identity: 40%
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form)

Phyre2
4 |
| c3fd5B_ |

### PDB 3fd5 chain B

Region: 1 - 326
Aligned: 314
Modelled: 326
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase 1;
PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp

Phyre2
5 |
| c2btuB_ |

### PDB 2btu chain B

Region: 12 - 312
Aligned: 293
Modelled: 301
Confidence: 100.0%
Identity: 21%
PDB header:synthase
Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase;
PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution.

Phyre2
6 |
| c3mcqA_ |

### PDB 3mcq chain A

Region: 18 - 321
Aligned: 290
Modelled: 304
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution

Phyre2
7 |
| c2zodB_ |

### PDB 2zod chain B

Region: 12 - 314
Aligned: 290
Modelled: 303
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus

Phyre2
8 |
| c1cliD_ |

### PDB 1cli chain D

Region: 17 - 311
Aligned: 290
Modelled: 295
Confidence: 100.0%
Identity: 19%
PDB header:ligase
Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase);
PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution

Phyre2
9 |
| c2zauB_ |

### PDB 2zau chain B

Region: 24 - 314
Aligned: 274
Modelled: 291
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus

Phyre2
10 |
| c3c9uB_ |

### PDB 3c9u chain B

Region: 12 - 332
Aligned: 292
Modelled: 321
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: aathil complexed with adp and tpp

Phyre2
11 |
| c2z01A_ |

### PDB 2z01 chain A

Region: 17 - 316
Aligned: 285
Modelled: 300
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus

Phyre2
12 |
| c1vqvB_ |

### PDB 1vqv chain B

Region: 16 - 326
Aligned: 276
Modelled: 311
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus

Phyre2
13 |
| c2v9yA_ |

### PDB 2v9y chain A

Region: 40 - 316
Aligned: 273
Modelled: 277
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: human aminoimidazole ribonucleotide synthetase

Phyre2
14 |
| c3m84A_ |

### PDB 3m84 chain A

Region: 12 - 314
Aligned: 300
Modelled: 303
Confidence: 100.0%
Identity: 15%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis

Phyre2
15 |
| c2yxzA_ |

### PDB 2yxz chain A

Region: 12 - 317
Aligned: 288
Modelled: 302
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:thiamin-monophosphate kinase;
PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8

Phyre2
16 |
| c3ac6A_ |

### PDB 3ac6 chain A

Region: 10 - 329
Aligned: 288
Modelled: 300
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2;
PDBTitle: crystal structure of purl from thermus thermophilus

Phyre2
17 |
| c2hs0A_ |

### PDB 2hs0 chain A

Region: 10 - 329
Aligned: 283
Modelled: 312
Confidence: 100.0%
Identity: 17%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: t. maritima purl complexed with atp

Phyre2
18 |
| c3d54I_ |

### PDB 3d54 chain I

Region: 7 - 329
Aligned: 286
Modelled: 321
Confidence: 100.0%
Identity: 17%
PDB header:ligase
Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: stucture of purlqs from thermotoga maritima

Phyre2
19 |
| c3mdoB_ |

### PDB 3mdo chain B

Region: 48 - 323
Aligned: 269
Modelled: 276
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution

Phyre2
20 |
| c3kizA_ |

### PDB 3kiz chain A

Region: 49 - 321
Aligned: 265
Modelled: 272
Confidence: 100.0%
Identity: 19%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2rb9D_ |
|  | 100.0 | 98 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype
2 | c2z1tA_ |
|  | 100.0 | 48 | PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype
3 | c2z1eA_ |
|  | 100.0 | 40 | PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form)
4 | c3fd5B_ |
|  | 100.0 | 18 | PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp
5 | c2btuB_ |
|  | 100.0 | 21 | PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution.
6 | c3mcqA_ |
|  | 100.0 | 22 | PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution
7 | c2zodB_ |
|  | 100.0 | 13 | PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus
8 | c1cliD_ |
|  | 100.0 | 19 | PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution
9 | c2zauB_ |
|  | 100.0 | 14 | PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus
10 | c3c9uB_ |
|  | 100.0 | 21 | PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp
11 | c2z01A_ |
|  | 100.0 | 24 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus
12 | c1vqvB_ |
|  | 100.0 | 23 | PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus
13 | c2v9yA_ |
|  | 100.0 | 21 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase
14 | c3m84A_ |
|  | 100.0 | 15 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis
15 | c2yxzA_ |
|  | 100.0 | 23 | PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8
16 | c3ac6A_ |
|  | 100.0 | 20 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus
17 | c2hs0A_ |
|  | 100.0 | 17 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp
18 | c3d54I_ |
|  | 100.0 | 17 | PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima
19 | c3mdoB_ |
|  | 100.0 | 20 | PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution
20 | c3kizA_ |
|  | 100.0 | 19 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
21 | c1t3tA_ |
| not modelled | 100.0 | 17 | PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase
22 | d2z1ea2 |
| not modelled | 100.0 | 36 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
23 | d3c9ua1 |
| not modelled | 100.0 | 17 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
24 | d1clia1 |
| not modelled | 100.0 | 18 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
25 | d2zoda2 |
| not modelled | 100.0 | 13 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
26 | d1clib1 |
| not modelled | 100.0 | 18 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
27 | d2z1ea1 |
| not modelled | 100.0 | 48 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
28 | d3c9ua2 |
| not modelled | 100.0 | 25 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
29 | d2zoda1 |
| not modelled | 99.9 | 15 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
30 | d2zaua1 |
| not modelled | 99.9 | 14 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
31 | d1clia2 |
| not modelled | 99.9 | 20 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
32 | d1vk3a3 |
| not modelled | 99.9 | 18 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
33 | d1t3ta6 |
| not modelled | 99.9 | 17 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
34 | d1vk3a2 |
| not modelled | 99.9 | 10 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
35 | d1vk3a1 |
| not modelled | 99.8 | 16 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
36 | d1t3ta7 |
| not modelled | 99.8 | 21 | Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like
37 | d1t3ta4 |
| not modelled | 99.2 | 15 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
38 | d1t3ta5 |
| not modelled | 98.9 | 15 | Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like
39 | d3dhxa1 |
| not modelled | 86.8 | 18 | Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like
40 | d1to3a_ |
| not modelled | 71.8 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
41 | d2qrra1 |
| not modelled | 56.5 | 17 | Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like
42 | d1w5fa2 |
| not modelled | 46.7 | 9 | Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain
43 | c3g85A_ |
| not modelled | 37.0 | 0 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum
44 | c3jrkG_ |
| not modelled | 30.7 | 16 | PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes
45 | d2qswa1 |
| not modelled | 28.1 | 14 | Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like
46 | c3shwA_ |
| not modelled | 27.5 | 18 | PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide
47 | d2csua1 |
| not modelled | 26.0 | 17 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain
48 | c3d02A_ |
| not modelled | 25.8 | 0 | PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
49 | d1jyea_ |
| not modelled | 25.5 | 21 | Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like
50 | c1jyeA_ |
| not modelled | 25.5 | 21 | PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution
51 | c3rotA_ |
| not modelled | 25.4 | 7 | PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila
52 | c3gbvB_ |
| not modelled | 24.9 | 16 | PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis
53 | c3eggC_ |
| not modelled | 23.3 | 14 | PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin
54 | c3o1hB_ |
| not modelled | 23.0 | 18 | PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
55 | d1oi7a1 |
| not modelled | 23.0 | 24 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain
56 | c3mizB_ |
| not modelled | 23.0 | 21 | PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli
57 | c2qjhH_ |
| not modelled | 21.6 | 15 | PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate
58 | c2vk2A_ |
| not modelled | 21.4 | 24 | PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein
59 | c3qi7A_ |
| not modelled | 20.0 | 18 | PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution
60 | c2hqbA_ |
| not modelled | 19.3 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
61 | c3d8uA_ |
| not modelled | 19.2 | 18 | PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633
62 | c2zplA_ |
| not modelled | 18.4 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain a
63 | c3cs3A_ |
| not modelled | 17.4 | 6 | PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis
64 | c3diwB_ |
| not modelled | 17.4 | 15 | PDB header:signaling protein/cell adhesion Chain: B: PDB Molecule:tax1-binding protein 3; PDBTitle: c-terminal beta-catenin bound tip-1 structure
65 | d1fnda1 |
| not modelled | 17.3 | 24 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
66 | c3h75A_ |
| not modelled | 17.2 | 15 | PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
67 | d1q3oa_ |
| not modelled | 17.2 | 9 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
68 | d1tjya_ |
| not modelled | 17.0 | 13 | Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like
69 | c3lukB_ |
| not modelled | 16.9 | 20 | PDB header:rna binding protein Chain: B: PDB Molecule:protein argonaute-2; PDBTitle: crystal structure of mid domain from hago2
70 | d1x5qa1 |
| not modelled | 16.9 | 23 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
71 | c2q6tB_ |
| not modelled | 16.7 | 13 | PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer
72 | c3fokH_ |
| not modelled | 16.4 | 19 | PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115
73 | c3jy6B_ |
| not modelled | 15.7 | 9 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis
74 | d1ekqa_ |
| not modelled | 15.2 | 20 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases
75 | d2dria_ |
| not modelled | 15.1 | 12 | Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like
76 | c3g1wB_ |
| not modelled | 15.0 | 9 | PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans
77 | c3k1rA_ |
| not modelled | 14.3 | 19 | PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
78 | d1gsoa2 |
| not modelled | 14.1 | 39 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like
79 | c3l4fD_ |
| not modelled | 13.5 | 9 | PDB header:signaling protein/protein binding Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein PDBTitle: crystal structure of betapix coiled-coil domain and shank2 pdz complex
80 | c3ksmA_ |
| not modelled | 13.4 | 16 | PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
81 | c3egcF_ |
| not modelled | 13.1 | 18 | PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis
82 | d1htwa_ |
| not modelled | 13.1 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:YjeE-like
83 | d1e8ca2 |
| not modelled | 12.9 | 42 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
84 | d1whaa_ |
| not modelled | 12.8 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
85 | c3kkeA_ |
| not modelled | 12.8 | 9 | PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis
86 | c2rjoA_ |
| not modelled | 12.8 | 15 | PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
87 | c3l49D_ |
| not modelled | 12.7 | 6 | PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1
88 | d1kona_ |
| not modelled | 12.6 | 15 | Fold:YebC-like Superfamily:YebC-like Family:YebC-like
89 | d1jx6a_ |
| not modelled | 12.5 | 9 | Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like
90 | d1udxa3 |
| not modelled | 12.2 | 29 | Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain
91 | d2ok5a4 |
| not modelled | 11.9 | 29 | Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain
92 | c3dzvB_ |
| not modelled | 11.9 | 24 | PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution
93 | d2nzug1 |
| not modelled | 11.5 | 12 | Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like
94 | d1ep3b1 |
| not modelled | 11.5 | 38 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like
95 | c3h5oB_ |
| not modelled | 11.4 | 15 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum
96 | d2byga1 |
| not modelled | 11.1 | 28 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
97 | c3l6uA_ |
| not modelled | 11.1 | 15 | PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum
98 | c3bilA_ |
| not modelled | 11.0 | 33 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum
99 | c2ka9A_ |
| not modelled | 10.9 | 15 | PDB header:cell adhesion Chain: A: PDB Molecule:disks large homolog 4; PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0