Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46877
DateThu Jan 5 12:35:29 GMT 2012
Unique Job ID9d81f8578575fe40

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ychD_
Top template information
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
Confidence and coverage
Confidence:100.0% Coverage: 82%
394 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
475 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFV
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWN
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  FNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFND
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  EVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGIAETDPRVAVKIFNVARSDKNEILT
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  NVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  QDAGFEMSLSLKAKWRPDQDALKLCREHGREIARQWALAPLPQSTVNTVVKEETSATTTA
Secondary structure 
SS confidence 
Disorder 
???????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........
Sequence  DLGPRMQCSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFEELASEAK
Secondary structure 
SS confidence 
Disorder  ????
????
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ych chain D

3D model

Region: 2 - 398
Aligned: 394
Modelled: 396
Confidence: 100.0%
Identity: 41%
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase

Phyre2

PDB 2q9u chain B

3D model

Region: 1 - 398
Aligned: 391
Modelled: 397
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis

Phyre2

PDB 1vme chain B

3D model

Region: 2 - 394
Aligned: 385
Modelled: 393
Confidence: 100.0%
Identity: 24%
PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution

Phyre2

PDB 1e5d chain A

3D model

Region: 2 - 398
Aligned: 393
Modelled: 396
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas

Phyre2

PDB 2ohi chain B

3D model

Region: 2 - 397
Aligned: 389
Modelled: 395
Confidence: 100.0%
Identity: 39%
PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state

Phyre2

PDB 3hnn chain D

3D model

Region: 1 - 252
Aligned: 247
Modelled: 252
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative diflavin flavoprotein a 5;
PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a

Phyre2

PDB 1ycg chain A domain 2

3D model

Region: 2 - 249
Aligned: 247
Modelled: 247
Confidence: 100.0%
Identity: 45%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: ROO N-terminal domain-like

Phyre2

PDB 1e5d chain A domain 2

3D model

Region: 2 - 249
Aligned: 246
Modelled: 247
Confidence: 100.0%
Identity: 36%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: ROO N-terminal domain-like

Phyre2

PDB 1vme chain A domain 2

3D model

Region: 4 - 249
Aligned: 238
Modelled: 246
Confidence: 100.0%
Identity: 29%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: ROO N-terminal domain-like

Phyre2

PDB 2q0i chain A domain 1

3D model

Region: 4 - 283
Aligned: 241
Modelled: 245
Confidence: 100.0%
Identity: 17%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: PqsE-like

Phyre2

PDB 1m2x chain A

3D model

Region: 2 - 249
Aligned: 211
Modelled: 217
Confidence: 100.0%
Identity: 15%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: Zn metallo-beta-lactamase

Phyre2

PDB 3fni chain A

3D model

Region: 249 - 403
Aligned: 151
Modelled: 155
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a

Phyre2

PDB 2zo4 chain A

3D model

Region: 5 - 245
Aligned: 206
Modelled: 212
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of metallo-beta-lactamase family protein ttha14292 from thermus thermophilus hb8

Phyre2

PDB 3hly chain A

3D model

Region: 253 - 400
Aligned: 144
Modelled: 148
Confidence: 100.0%
Identity: 19%
PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.

Phyre2

PDB 1ko3 chain A

3D model

Region: 2 - 244
Aligned: 206
Modelled: 212
Confidence: 100.0%
Identity: 17%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: Zn metallo-beta-lactamase

Phyre2

PDB 2gmn chain A domain 1

3D model

Region: 2 - 231
Aligned: 194
Modelled: 212
Confidence: 100.0%
Identity: 20%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: Zn metallo-beta-lactamase

Phyre2

PDB 1mqo chain A

3D model

Region: 2 - 244
Aligned: 208
Modelled: 214
Confidence: 100.0%
Identity: 16%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: Zn metallo-beta-lactamase

Phyre2

PDB 2cfu chain A

3D model

Region: 3 - 245
Aligned: 202
Modelled: 209
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:sdsa1;
PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.

Phyre2

PDB 1ycg chain A domain 1

3D model

Region: 251 - 398
Aligned: 146
Modelled: 148
Confidence: 100.0%
Identity: 36%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2

PDB 2cfu chain A domain 2

3D model

Region: 3 - 245
Aligned: 202
Modelled: 209
Confidence: 100.0%
Identity: 20%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: Alkylsulfatase-like

Phyre2

PDB 1qrd chain A

3D model

Region: 252 - 448
Aligned: 195
Modelled: 195
Confidence: 99.1%
Identity: 13%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1dx8 chain A

3D model

Region: 423 - 478
Aligned: 56
Modelled: 56
Confidence: 98.0%
Identity: 32%
Fold: Rubredoxin-like
Superfamily: Rubredoxin-like
Family: Rubredoxin

Phyre2

PDB 1qcv chain A

3D model

Region: 424 - 475
Aligned: 52
Modelled: 52
Confidence: 97.7%
Identity: 31%
Fold: Rubredoxin-like
Superfamily: Rubredoxin-like
Family: Rubredoxin

Phyre2

PDB 1brf chain A

3D model

Region: 424 - 475
Aligned: 52
Modelled: 52
Confidence: 97.7%
Identity: 38%
Fold: Rubredoxin-like
Superfamily: Rubredoxin-like
Family: Rubredoxin

Phyre2
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c1ychD_
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c2q9uB_
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c1vmeB_
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c1e5dA_
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c2ohiB_
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c3hnnD_
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d1ycga2
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d1e5da2
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d1vmea2
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d2q0ia1
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d1m2xa_
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c3fniA_
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c2zo4A_
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c3hlyA_
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d1ko3a_
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d2gmna1
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d1mqoa_
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c2cfuA_
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d1ycga1
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d2cfua2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ychD_
100.0 41 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
2c2q9uB_
100.0 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
3c1vmeB_
100.0 24 PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
4c1e5dA_
100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
5c2ohiB_
100.0 39 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
6c3hnnD_
100.0 23 PDB header:oxidoreductase
Chain: D: PDB Molecule:putative diflavin flavoprotein a 5;
PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a
7d1ycga2
100.0 45 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:ROO N-terminal domain-like
8d1e5da2
100.0 36 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:ROO N-terminal domain-like
9d1vmea2
100.0 29 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:ROO N-terminal domain-like
10d2q0ia1
100.0 17 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:PqsE-like
11d1m2xa_
100.0 15 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
12c3fniA_
100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
13c2zo4A_
100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of metallo-beta-lactamase family protein ttha14292 from thermus thermophilus hb8
14c3hlyA_
100.0 19 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
15d1ko3a_
100.0 17 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
16d2gmna1
100.0 20 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
17d1mqoa_
100.0 16 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
18c2cfuA_
100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:sdsa1;
PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.
19d1ycga1
100.0 36 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
20d2cfua2
100.0 20 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Alkylsulfatase-like
21d1znba_
not modelled 100.0 13 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
22d1jjta_
not modelled 100.0 16 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
23d1e5da1
not modelled 100.0 31 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
24c3lvzA_
not modelled 100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:blr6230 protein;
PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum
25d1vmea1
not modelled 100.0 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
26c3rkjA_
not modelled 100.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase ndm-1;
PDBTitle: crystal structure of new delhi metallo-beta-lactamase-1 from2 klebsiella pnueumoniae
27c3l6nA_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:metallo-beta-lactamase;
PDBTitle: crystal structure of metallo-beta-lactamase ind-7
28c2yz3B_
not modelled 100.0 16 PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase;
PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor
29c3spuB_
not modelled 100.0 14 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase ndm-1;
PDBTitle: apo ndm-1 crystal structure
30d2aioa1
not modelled 100.0 21 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
31d1x8ha_
not modelled 100.0 15 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
32c2fhxB_
not modelled 100.0 15 PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:spm-1;
PDBTitle: pseudomonas aeruginosa spm-1 metallo-beta-lactamase
33d1k07a_
not modelled 100.0 20 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
34c3sd9B_
not modelled 99.9 16 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases
35d2arka1
not modelled 99.9 27 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
36d1xm8a_
not modelled 99.9 21 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
37c3adrA_
not modelled 99.9 19 PDB header:signaling protein
Chain: A: PDB Molecule:putative uncharacterized protein st1585;
PDBTitle: the first crystal structure of an archaeal metallo-beta-lactamase2 superfamily protein; st1585 from sulfolobus tokodaii
38c3tp9B_
not modelled 99.9 19 PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains
39c3d7nA_
not modelled 99.9 15 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
40c3r2uC_
not modelled 99.9 23 PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col
41d2qeda1
not modelled 99.9 20 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
42d2a5la1
not modelled 99.9 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
43c2gcuD_
not modelled 99.9 19 PDB header:hydrolase
Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3;
PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580
44d2fz5a1
not modelled 99.9 23 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
45d1qh5a_
not modelled 99.9 20 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
46d5nula_
not modelled 99.9 28 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
47c3b6iB_
not modelled 99.9 22 PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
48c3aj3A_
not modelled 99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:4-pyridoxolactonase;
PDBTitle: crystal structure of selenomethionine substituted 4-pyridoxolactonase2 from mesorhizobium loti
49d2p97a1
not modelled 99.9 19 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Ava3068-like
50c2xf4A_
not modelled 99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase;
PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl
51c2zkiH_
not modelled 99.9 21 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
52c2p18A_
not modelled 99.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:glyoxalase ii;
PDBTitle: crystal structure of the leishmania infantum glyoxalase ii
53c3f6sI_
not modelled 99.9 18 PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
54d1ydga_
not modelled 99.9 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
55c2zwrA_
not modelled 99.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein;
PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8
56c2r2dC_
not modelled 99.8 18 PDB header:hydrolase
Chain: C: PDB Molecule:zn-dependent hydrolases;
PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens
57c3eshB_
not modelled 99.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:protein similar to metal-dependent hydrolase;
PDBTitle: crystal structure of a probable metal-dependent hydrolase2 from staphylococcus aureus. northeast structural genomics3 target zr314
58d1f4pa_
not modelled 99.8 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
59c3zq4C_
not modelled 99.8 18 PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease j 1;
PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1
60c3klbA_
not modelled 99.8 17 PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
61c2hnbA_
not modelled 99.8 18 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
62c2p4zA_
not modelled 99.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:metal-dependent hydrolases of the beta-lactamase
PDBTitle: a ferredoxin-like metallo-beta-lactamase superfamily protein from2 thermoanaerobacter tengcongensis
63d1ztca1
not modelled 99.8 18 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:TM0894-like
64c2br6A_
not modelled 99.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:aiia-like protein;
PDBTitle: crystal structure of quorum-quenching n-acyl homoserine2 lactone lactonase
65c3bk2A_
not modelled 99.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:metal dependent hydrolase;
PDBTitle: crystal structure analysis of the rnase j/ump complex
66c1p9eA_
not modelled 99.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:methyl parathion hydrolase;
PDBTitle: crystal structure analysis of methyl parathion hydrolase from2 pseudomonas sp wbc-3
67d1p9ea_
not modelled 99.8 20 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Methyl parathion hydrolase
68d1b1ca_
not modelled 99.7 10 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
69d1ykga1
not modelled 99.7 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
70d1oboa_
not modelled 99.7 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
71c2xr1A_
not modelled 99.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd
PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
72d1ag9a_
not modelled 99.7 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
73c3edoA_
not modelled 99.7 15 PDB header:flavoprotein
Chain: A: PDB Molecule:putative trp repressor binding protein;
PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
74d1czna_
not modelled 99.6 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
75d1sqsa_
not modelled 99.6 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein SP1951
76d2i7ta1
not modelled 99.6 13 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:beta-CASP RNA-metabolising hydrolases
77d1yoba1
not modelled 99.6 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
78c2xr1B_
not modelled 99.6 16 PDB header:hydrolase
Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd
PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
79c3af5A_
not modelled 99.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ph1404;
PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii
80d2i7xa1
not modelled 99.6 12 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:beta-CASP RNA-metabolising hydrolases
81c2i7xA_
not modelled 99.6 12 PDB header:rna binding protein, protein binding
Chain: A: PDB Molecule:protein cft2;
PDBTitle: structure of yeast cpsf-100 (ydh1p)
82c2ycbA_
not modelled 99.6 20 PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor;
PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus
83d1bvyf_
not modelled 99.6 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
84c1bvyF_
not modelled 99.6 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
85d1ja1a2
not modelled 99.6 10 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
86d2dkfa1
not modelled 99.6 21 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:beta-CASP RNA-metabolising hydrolases
87c1zkpD_
not modelled 99.6 17 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein ba1088;
PDBTitle: 1.5a resolution crystal structure of a metallo beta lactamase family2 protein, the elac homolgue of bacillus anthracis, a putative3 ribonuclease
88c3hr4C_
not modelled 99.6 15 PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
89c2az4A_
not modelled 99.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ef2904;
PDBTitle: crystal structure of a protein of unknown function from enterococcus2 faecalis v583
90d2fcra_
not modelled 99.6 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
91c2wc1A_
not modelled 99.5 22 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
92c2hpvA_
not modelled 99.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
93d1tlla2
not modelled 99.4 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
94c3h3eA_
not modelled 99.4 21 PDB header:structural genomics, metal binding prote
Chain: A: PDB Molecule:uncharacterized protein tm1679;
PDBTitle: crystal structure of tm1679, a metal-dependent hydrolase of2 the beta-lactamase superfamily
95d1t5ba_
not modelled 99.4 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
96c3p0rA_
not modelled 99.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
97d1fuea_
not modelled 99.4 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
98d1zkpa1
not modelled 99.4 20 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:YhfI-like
99c2q62A_
not modelled 99.4 15 PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti
100c2v9cA_
not modelled 99.3 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
101d2z98a1
not modelled 99.3 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
102c3fvwA_
not modelled 99.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase;
PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.
103c3k1yE_
not modelled 99.3 14 PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d
104c2vzhA_
not modelled 99.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-dependent fmn reductase;
PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex
105d1rlia_
not modelled 99.3 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein YwqN
106c3f2vA_
not modelled 99.3 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
107d2qwxa1
not modelled 99.3 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
108c3kl7A_
not modelled 99.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent hydrolase;
PDBTitle: crystal structure of putative metal-dependent hydrolase2 (yp_001302908.1) from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution
109d1t0ia_
not modelled 99.3 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
110c2fzvC_
not modelled 99.3 12 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri
111c3lcmB_
not modelled 99.2 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
112d1y44a1
not modelled 99.2 15 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:RNase Z-like
113c3g1pA_
not modelled 99.2 15 PDB header:lyase
Chain: A: PDB Molecule:protein phnp;
PDBTitle: crystals structure of phnp from e.coli k-12
114c3zwfA_
not modelled 99.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:zinc phosphodiesterase elac protein 1;
PDBTitle: crystal structure of human trnase z, short form (elac1).
115c1tllA_
not modelled 99.2 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
116d1nni1_
not modelled 99.1 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
117d1rtta_
not modelled 99.1 11 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
118c2bibA_
not modelled 99.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:teichoic acid phosphorylcholine esterase/ choline binding
PDBTitle: crystal structure of the complete modular teichioic acid2 phosphorylcholine esterase pce (cbpe) from streptococcus3 pneumoniae
119c3rpeA_
not modelled 99.1 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:modulator of drug activity b;
PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
120c3md7A_
not modelled 99.1 17 PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase-like;
PDBTitle: crystal structure of a beta-lactamase-like protein bound to gmp from2 brucella melitensis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0