Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	L	L	L	F	N	D	K	S	R	A	L	Q	A	D	I	V	A	V	Q	S	Q	V	V	Y	G	S	V	G	N	S	I	A	V	P	A	I	K	Q	N	G	L	N	V	F	A	V	P	T	V	L	L	S	N	T	P	H	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	T	F	Y	G	G	A	I	P	D	E	W	F	S	G	Y	L	R	A	L	Q	E	R	D	A	L	R	Q	L	R	A	V	T	T	G	Y	M	G	T	A	S	Q	I	K	I	L	A	E	W	L	T	A	L	R	K	D	H	P	D	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	I	M	V	D	P	V	I	G	D	I	D	S	G	I	Y	V	K	P	D	L	P	E	A	Y	R	Q	Y	L	L	P	L	A	Q	G	I	T	P	N	I	F	E	L	E	I	L	T	G	K	N	C	R	D	L	D	S	A	I	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	K	S	L	L	S	D	T	L	K	W	V	V	V	T	S	A	S	G	N	E	E	N	Q	E	M	Q	V	V	V	V	T	A	D	S	V	N	V	I	S	H	S	R	V	K	T	D	L	K	G	T	G	D	L	F	C	A	Q	L	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Sequence		S	G	L	L	K	G	K	A	L	T	D	A	V	H	R	A	G	L	R	V	L	E	V	M	R	Y	T	Q	Q	H	E	S	D	E	L	I	L	P	P	L	A	E	A
Secondary structure
SS confidence
Disorder																																?	?	?					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vi9 chain A Region: 14 - 282 Aligned: 268 Modelled: 269 Confidence: 100.0% Identity: 27% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: PfkB-like kinase Phyre2 PDB 1lhp chain A Region: 15 - 282 Aligned: 267 Modelled: 268 Confidence: 100.0% Identity: 28% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: PfkB-like kinase Phyre2 PDB 2ddm chain A Region: 10 - 280 Aligned: 264 Modelled: 271 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution Phyre2 PDB 3mbj chain A Region: 12 - 282 Aligned: 265 Modelled: 271 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) Phyre2 PDB 3ibq chain A Region: 16 - 276 Aligned: 255 Modelled: 261 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp Phyre2 PDB 3rm5 chain B Region: 15 - 271 Aligned: 237 Modelled: 257 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast Phyre2 PDB 2i5b chain C Region: 16 - 273 Aligned: 251 Modelled: 255 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution Phyre2 PDB 1ub0 chain A Region: 14 - 277 Aligned: 242 Modelled: 264 Confidence: 100.0% Identity: 22% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 1jxh chain A Region: 15 - 279 Aligned: 238 Modelled: 265 Confidence: 100.0% Identity: 18% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 1kyh chain A Region: 17 - 279 Aligned: 231 Modelled: 245 Confidence: 99.9% Identity: 15% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: YjeF C-terminal domain-like Phyre2 PDB 2r3b chain A Region: 17 - 271 Aligned: 226 Modelled: 255 Confidence: 99.9% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution Phyre2 PDB 2ax3 chain A domain 1 Region: 17 - 273 Aligned: 232 Modelled: 247 Confidence: 99.9% Identity: 14% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: YjeF C-terminal domain-like Phyre2 PDB 2jg5 chain B Region: 13 - 265 Aligned: 223 Modelled: 239 Confidence: 99.9% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus Phyre2 PDB 2abq chain A domain 1 Region: 13 - 266 Aligned: 224 Modelled: 240 Confidence: 99.9% Identity: 21% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3dzv chain B Region: 89 - 273 Aligned: 169 Modelled: 185 Confidence: 99.9% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution Phyre2 PDB 3cqd chain B Region: 13 - 265 Aligned: 225 Modelled: 240 Confidence: 99.8% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 2f02 chain A domain 1 Region: 13 - 266 Aligned: 228 Modelled: 254 Confidence: 99.8% Identity: 14% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3bgk chain A Region: 17 - 273 Aligned: 227 Modelled: 244 Confidence: 99.8% Identity: 14% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans Phyre2 PDB 2jg1 chain C Region: 13 - 265 Aligned: 227 Modelled: 241 Confidence: 99.8% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate Phyre2 PDB 1v8a chain A Region: 89 - 273 Aligned: 166 Modelled: 184 Confidence: 99.8% Identity: 14% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 1ps9 chain A domain 3 Region: 1 - 49 Aligned: 44 Modelled: 44 Confidence: 55.3% Identity: 16% Fold: Nucleotide-binding domain Superfamily: Nucleotide-binding domain Family: N-terminal domain of adrenodoxin reductase-like Phyre2 1 d1vi9a_ 2 d1lhpa_ 3 c2ddmA_ 4 c3mbjA_ 5 c3ibqA_ 6 c3rm5B_ 7 c2i5bC_ 8 d1ub0a_ 9 d1jxha_ 10 d1kyha_ 11 c2r3bA_ 12 d2ax3a1 13 c2jg5B_ 14 d2abqa1 15 c3dzvB_ 16 c3cqdB_ 17 d2f02a1 18 c3bgkA_ 19 c2jg1C_ 20 d1v8aa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 d1ps9a3 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vi9a_ 100.0 27 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 2 d1lhpa_ 100.0 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 3 c2ddmA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 4 c3mbjA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 5 c3ibqA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 6 c3rm5B_ 100.0 19 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 7 c2i5bC_ 100.0 20 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 8 d1ub0a_ 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 9 d1jxha_ 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 10 d1kyha_ 99.9 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 11 c2r3bA_ 99.9 15 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 12 d2ax3a1 99.9 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 13 c2jg5B_ 99.9 16 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 14 d2abqa1 99.9 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 15 c3dzvB_ 99.9 20 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 16 c3cqdB_ 99.8 17 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 17 d2f02a1 99.8 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 18 c3bgkA_ 99.8 14 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 19 c2jg1C_ 99.8 13 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 20 d1v8aa_ 99.8 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 21 d1rkda_ not modelled 99.8 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 22 c2ax3A_ not modelled 99.8 15 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 23 c3pl2D_ not modelled 99.8 16 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 24 c3kzhA_ not modelled 99.8 19 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 25 c2xtbA_ not modelled 99.8 17 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 26 c3looC_ not modelled 99.8 15 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 27 c2qcvA_ not modelled 99.8 13 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 28 c3iq0B_ not modelled 99.8 17 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 29 d1bx4a_ not modelled 99.7 12 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 30 c2qhpA_ not modelled 99.7 19 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 31 c3ktnA_ not modelled 99.7 16 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 32 d2afba1 not modelled 99.7 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 33 d1v19a_ not modelled 99.7 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 34 c3b1qD_ not modelled 99.7 17 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 35 c2pkkA_ not modelled 99.7 17 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 36 c3nm3D_ not modelled 99.7 12 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 37 d1ekqa_ not modelled 99.7 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 38 c3in1A_ not modelled 99.7 20 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 39 c3julA_ not modelled 99.7 16 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 40 c3lhxA_ not modelled 99.7 16 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 41 c2nwhA_ not modelled 99.7 16 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 42 c2c49A_ not modelled 99.7 16 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 43 c2absA_ not modelled 99.7 14 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 44 d2absa1 not modelled 99.7 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 45 d2ajra1 not modelled 99.7 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 46 d1tyya_ not modelled 99.7 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 47 d1vm7a_ not modelled 99.6 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 48 d2fv7a1 not modelled 99.6 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 49 d2dcna1 not modelled 99.6 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 50 c2varB_ not modelled 99.6 13 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 51 c3go6B_ not modelled 99.6 20 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 52 c1tz6B_ not modelled 99.6 15 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 53 c3k5wA_ not modelled 99.6 19 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 54 c3kd6B_ not modelled 99.6 15 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 55 c2rbcA_ not modelled 99.6 17 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 56 d1vk4a_ not modelled 99.6 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 57 c3i3yB_ not modelled 99.6 17 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 58 c3bf5A_ not modelled 99.5 16 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 59 c3b3lC_ not modelled 99.5 19 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 60 c3hj6B_ not modelled 99.5 16 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 61 c3gbuD_ not modelled 99.5 14 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 62 c3lkiA_ not modelled 99.3 12 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 63 d2g0ta1 not modelled 89.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 64 d1gc5a_ not modelled 86.2 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 65 c2obnA_ not modelled 80.0 16 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 66 d1ua4a_ not modelled 75.9 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 67 d1l2la_ not modelled 68.4 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 68 c1y80A_ not modelled 64.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 69 d1u2xa_ not modelled 59.2 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 70 d1ps9a3 55.3 16 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 71 d1a9xa3 not modelled 55.2 22 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 72 c3d8xB_ not modelled 49.7 6 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 73 c2bcpA_ not modelled 49.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide 74 c3ezxA_ not modelled 43.7 13 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 75 c1zu4A_ not modelled 37.6 10 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 76 d1eucb1 not modelled 37.5 16 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 77 c3drwA_ not modelled 36.0 15 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 78 d1su0b_ not modelled 35.6 21 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 79 c2ejcA_ not modelled 33.9 13 PDB header:ligase Chain: A: PDB Molecule:pantoate--beta-alanine ligase; PDBTitle: crystal structure of pantoate--beta-alanine ligase (panc)2 from thermotoga maritima 80 d1vcha1 not modelled 30.2 21 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 81 c1ps9A_ not modelled 29.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 82 d1s8na_ not modelled 29.1 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 83 d2b7oa1 not modelled 27.3 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase 84 c3r89A_ not modelled 26.0 19 PDB header:lyase Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: crystal structure of orotidine 5-phosphate decarboxylase from2 anaerococcus prevotii dsm 20548 85 c3rhtB_ not modelled 25.8 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:(gatase1)-like protein; PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus 86 d1ihoa_ not modelled 25.8 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 87 c3iuuA_ not modelled 25.1 18 PDB header:hydrolase Chain: A: PDB Molecule:putative metallopeptidase; PDBTitle: crystal structure of putative metallopeptidase (yp_676511.1) from2 mesorhizobium sp. bnc1 at 2.13 a resolution 88 d2nu7b1 not modelled 25.0 14 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 89 c1vmaA_ not modelled 24.9 11 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution 90 c2x5fB_ not modelled 24.7 28 PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase 91 d1fuia2 not modelled 24.2 20 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:L-fucose isomerase, N-terminal and second domains 92 d1z7da1 not modelled 24.1 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 93 c3euaD_ not modelled 23.8 10 PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution 94 c3ag5A_ not modelled 22.5 16 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantothenate synthetase from staphylococcus2 aureus 95 d2gtad1 not modelled 22.3 19 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 96 c1djnB_ not modelled 22.2 20 PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) 97 c2yxbA_ not modelled 21.4 12 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 98 c3mxtA_ not modelled 21.3 18 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine ligase from campylobacter2 jejuni 99 c2gacD_ not modelled 20.7 15 PDB header:hydrolase Chain: D: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0