Email l.a.kelley@imperial.ac.uk Description P09373 Date Thu Jan 5 11:02:15 GMT 2012 Unique Job ID 973cbb7f09cb6b84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1h16a_ 100.0 100 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 2 d1qhma_ 100.0 100 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 3 d1r9da_ 100.0 28 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 4 c2y8nC_ 100.0 21 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 5 c2f3oB_ 100.0 21 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 6 d1hk8a_ 99.5 16 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 7 c1hk8A_ 99.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 8 c2cvuA_ 90.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 9 c2wghA_ 89.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 10 c3hnfA_ 88.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 11 c1xjeA_ 87.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex 12 c3r1rB_ 84.4 17 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 13 c3gr1A_ 71.8 23 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 14 c1pemA_ 69.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium 15 d1rlra2 66.9 18 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 16 d2bgxa1 56.3 20 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 17 d1u5tb1 50.3 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 18 c3gr0D_ 48.9 23 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 19 d1dq3a4 46.9 19 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 20 c2jobA_ 40.5 24 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 21 d1jvaa3 not modelled 36.3 10 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 22 d2i15a1 not modelled 34.0 28 Fold:MG296-like Superfamily:MG296-like Family:MG296-like 23 c2vkjA_ not modelled 28.9 24 PDB header:membrane protein Chain: A: PDB Molecule:tm1634; PDBTitle: structure of the soluble domain of the membrane protein2 tm1634 from thermotoga maritima 24 d2di0a1 not modelled 24.5 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 25 c3gebC_ not modelled 23.3 24 PDB header:hydrolase Chain: C: PDB Molecule:eyes absent homolog 2; PDBTitle: crystal structure of edeya2 26 d1ztda1 not modelled 21.7 25 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like 27 c3uo9B_ not modelled 21.4 20 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 28 d1nh2a2 not modelled 20.3 36 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 29 d1aisa1 not modelled 19.9 36 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 30 d1nh2a1 not modelled 19.7 25 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 31 c1r8jB_ not modelled 19.7 24 PDB header:circadian clock protein Chain: B: PDB Molecule:kaia; PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus 32 d1qnaa2 not modelled 19.1 36 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 33 d1mp9a1 not modelled 19.0 29 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 34 d1aisa2 not modelled 18.8 36 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 35 c2khvA_ not modelled 18.3 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b. 36 d1v5ra1 not modelled 17.8 33 Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain 37 d1rpya_ not modelled 17.7 17 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 38 d1qnaa1 not modelled 17.6 25 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 39 d1jwoa_ not modelled 17.4 39 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 40 d1mp9a2 not modelled 17.3 42 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 41 d1w7pd1 not modelled 16.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 42 c2q01A_ not modelled 16.4 19 PDB header:isomerase Chain: A: PDB Molecule:uronate isomerase; PDBTitle: crystal structure of glucuronate isomerase from caulobacter crescentus 43 c2hjhB_ not modelled 16.1 44 PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase 44 d1uj8a1 not modelled 15.8 22 Fold:Another 3-helical bundle Superfamily:IscX-like Family:IscX-like 45 d1vioa2 not modelled 15.5 17 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 46 d1cdwa1 not modelled 15.5 25 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 47 c3knyA_ not modelled 14.9 14 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein bt_3535; PDBTitle: crystal structure of a two domain protein with unknown function2 (bt_3535) from bacteroides thetaiotaomicron vpi-5482 at 2.60 a3 resolution 48 d1k9aa2 not modelled 14.6 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 49 c2a7oA_ not modelled 14.2 29 PDB header:transcription Chain: A: PDB Molecule:huntingtin interacting protein b; PDBTitle: solution structure of the hset2/hypb sri domain 50 d1bf5a3 not modelled 13.9 12 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 51 c2k5eA_ not modelled 13.6 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 52 c2zcyM_ not modelled 13.1 28 PDB header:hydrolase Chain: M: PDB Molecule:proteasome component pre4; PDBTitle: yeast 20s proteasome:syringolin a-complex 53 d1i3za_ not modelled 13.0 25 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 54 c3vjjA_ not modelled 12.9 23 PDB header:viral protein Chain: A: PDB Molecule:p9-1; PDBTitle: crystal structure analysis of the p9-1 55 d1xlya_ not modelled 12.9 22 Fold:RNA-binding protein She2p Superfamily:RNA-binding protein She2p Family:RNA-binding protein She2p 56 d1fs7a_ not modelled 12.8 13 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 57 c1fs9A_ not modelled 12.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 58 d2nlua1 not modelled 12.4 44 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 59 d1dwka2 not modelled 12.3 21 Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain 60 d1cdwa2 not modelled 12.3 25 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 61 c3pkiF_ not modelled 12.3 32 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 62 c3gd5D_ not modelled 12.2 19 PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus 63 c2ci8A_ not modelled 12.2 24 PDB header:translation Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: sh2 domain of human nck1 adaptor protein - uncomplexed 64 c3k35D_ not modelled 12.1 32 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 65 c2q82A_ not modelled 11.9 35 PDB header:structural protein Chain: A: PDB Molecule:core protein p7; PDBTitle: crystal structure of core protein p7 from pseudomonas phage2 phi12. northeast structural genomics target oc1 66 d1u8sa1 not modelled 11.9 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 67 c2hx6A_ not modelled 11.9 14 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 68 d1p9ka_ not modelled 11.9 14 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 69 c2ksgA_ not modelled 11.8 28 PDB header:antibiotic Chain: A: PDB Molecule:dermcidin; PDBTitle: solution structure of dermcidin-1l, a human antibiotic2 peptide 70 c3d36B_ not modelled 11.7 13 PDB header:transferase/transferase inhibitor Chain: B: PDB Molecule:sporulation kinase b; PDBTitle: how to switch off a histidine kinase: crystal structure of2 geobacillus stearothermophilus kinb with the inhibitor sda 71 c2pmzV_ not modelled 11.7 12 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 72 c3df1R_ not modelled 11.6 19 PDB header:ribosome Chain: R: PDB Molecule:30s ribosomal protein s18; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with hygromycin b. this file contains the3 30s subunit of the first 70s ribosome, with hygromycin b4 bound. the entire crystal structure contains two 70s5 ribosomes. 73 c3d2rB_ not modelled 11.4 9 PDB header:transferase Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4; PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp 74 c2vpmB_ not modelled 11.4 11 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 75 d1hmja_ not modelled 11.3 9 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 76 c3pcsB_ not modelled 11.2 18 PDB header:protein transport/transferase Chain: B: PDB Molecule:espg; PDBTitle: structure of espg-pak2 autoinhibitory ialpha3 helix complex 77 d1yuaa2 not modelled 11.1 11 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 78 d1dzfa2 not modelled 11.0 14 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 79 d1etea_ not modelled 10.9 10 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 80 d1qada_ not modelled 10.8 12 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 81 c2i6lB_ not modelled 10.8 14 PDB header:transferase Chain: B: PDB Molecule:mitogen-activated protein kinase 6; PDBTitle: crystal structure of human mitogen activated protein kinase2 6 (mapk6) 82 d1a81e1 not modelled 10.6 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 83 c3sohB_ not modelled 10.6 29 PDB header:motor protein Chain: B: PDB Molecule:flagellar motor switch protein flig; PDBTitle: architecture of the flagellar rotor 84 c2uvaI_ not modelled 10.6 12 PDB header:transferase Chain: I: PDB Molecule:fatty acid synthase beta subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 85 c2kj8A_ not modelled 10.4 13 PDB header:dna binding protein Chain: A: PDB Molecule:putative prophage cps-53 integrase; PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2 86 d2uubr1 not modelled 10.4 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein S18 Family:Ribosomal protein S18 87 d1eika_ not modelled 10.3 16 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 88 c3t4aG_ not modelled 10.1 33 PDB header:immune system Chain: G: PDB Molecule:fibrinogen-binding protein; PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution 89 d2b4ya1 not modelled 10.1 22 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 90 d1jyra_ not modelled 10.1 38 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 91 c3ol0C_ not modelled 10.1 50 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 92 c3hp7A_ not modelled 10.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 93 c1mqrA_ not modelled 10.0 21 PDB header:hydrolase Chain: A: PDB Molecule:alpha-d-glucuronidase; PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6 94 c3dxnA_ not modelled 9.9 19 PDB header:transferase Chain: A: PDB Molecule:calmodulin-like domain protein kinase isoform 3; PDBTitle: crystal structure of the calcium-dependent kinase from toxoplasma2 gondii, 541.m00134, kinase domain. 95 d1yc5a1 not modelled 9.8 32 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 96 c3cekA_ not modelled 9.7 10 PDB header:transferase Chain: A: PDB Molecule:dual specificity protein kinase ttk; PDBTitle: crystal structure of human dual specificity protein kinase (ttk) 97 c3nzqB_ not modelled 9.6 13 PDB header:lyase Chain: B: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600 98 c3gxxB_ not modelled 9.5 13 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 99 c2vkzH_ not modelled 9.4 13 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex