Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	K	L	T	K	R	M	R	V	I	R	E	K	V	D	A	T	K	Q	Y	D	I	N	E	A	I	A	L	L	K	E	L	A	T	A	K	F	V	E	S	V	D	V	A	V	N	L	G	I	D	A	R	K	S	D	Q	N	V	R
Secondary structure
SS confidence
Disorder		?	?	?	?									?	?	?	?		?	?	?																		?															?	?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	A	T	V	L	P	H	G	T	G	R	S	V	R	V	A	V	F	T	Q	G	A	N	A	E	A	A	K	A	A	G	A	E	L	V	G	M	E	D	L	A	D	Q	I	K	K	G	E	M	N	F	D	V	V	I	A	S	P	D	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	R	V	V	G	Q	L	G	Q	V	L	G	P	R	G	L	M	P	N	P	K	V	G	T	V	T	P	N	V	A	E	A	V	K	N	A	K	A	G	Q	V	R	Y	R	N	D	K	N	G	I	I	H	T	T	I	G	K	V	D	F
Secondary structure
SS confidence
Disorder									?	?	?							?	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence		D	A	D	K	L	K	E	N	L	E	A	L	L	V	A	L	K	K	A	K	P	T	Q	A	K	G	V	Y	I	K	K	V	S	I	S	T	T	M	G	A	G	V	A	V	D	Q	A	G	L	S	A	S	V	N
Secondary structure
SS confidence
Disorder																				?	?		?	?	?																										?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qoy chain A Region: 1 - 231 Aligned: 231 Modelled: 231 Confidence: 100.0% Identity: 45% PDB header:ribosomal protein Chain: A: PDB Molecule:50s ribosomal protein l1; PDBTitle: crystal structure of ribosomal protein l1 from aquifex aeolicus Phyre2 PDB 1ad2 chain A Region: 6 - 228 Aligned: 223 Modelled: 223 Confidence: 100.0% Identity: 50% Fold: Ribosomal protein L1 Superfamily: Ribosomal protein L1 Family: Ribosomal protein L1 Phyre2 PDB 3bbo chain D Region: 3 - 228 Aligned: 226 Modelled: 226 Confidence: 100.0% Identity: 45% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein l1; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2gyc chain 2 Region: 6 - 227 Aligned: 222 Modelled: 222 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l1; PDBTitle: structure of the 50s subunit of a secm-stalled e. coli2 ribosome complex obtained by fitting atomic models for rna3 and protein components into cryo-em map emd-1143 Phyre2 PDB 1mzp chain A Region: 22 - 225 Aligned: 198 Modelled: 204 Confidence: 100.0% Identity: 26% Fold: Ribosomal protein L1 Superfamily: Ribosomal protein L1 Family: Ribosomal protein L1 Phyre2 PDB 1dwu chain A Region: 23 - 225 Aligned: 198 Modelled: 203 Confidence: 100.0% Identity: 29% Fold: Ribosomal protein L1 Superfamily: Ribosomal protein L1 Family: Ribosomal protein L1 Phyre2 PDB 1i2a chain A Region: 22 - 225 Aligned: 199 Modelled: 204 Confidence: 100.0% Identity: 29% Fold: Ribosomal protein L1 Superfamily: Ribosomal protein L1 Family: Ribosomal protein L1 Phyre2 PDB 2zkr chain 5 Region: 22 - 224 Aligned: 198 Modelled: 203 Confidence: 100.0% Identity: 31% PDB header:ribosomal protein/rna Chain: 5: PDB Molecule:60s ribosomal protein l10a; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1i chain A Region: 15 - 224 Aligned: 205 Modelled: 207 Confidence: 100.0% Identity: 18% PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 3iz5 chain A Region: 13 - 225 Aligned: 208 Modelled: 211 Confidence: 100.0% Identity: 22% PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 2ftc chain A Region: 42 - 229 Aligned: 185 Modelled: 188 Confidence: 100.0% Identity: 20% PDB header:ribosome Chain: A: PDB Molecule:mitochondrial ribosomal protein l1; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 2j01 chain C domain 1 Region: 19 - 223 Aligned: 190 Modelled: 205 Confidence: 100.0% Identity: 49% Fold: Ribosomal protein L1 Superfamily: Ribosomal protein L1 Family: Ribosomal protein L1 Phyre2 PDB 2ov7 chain C Region: 11 - 228 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 59% PDB header:ribosomal protein Chain: C: PDB Molecule:50s ribosomal protein l1; PDBTitle: the first domain of the ribosomal protein l1 from thermus2 thermophilus Phyre2 PDB 2kzh chain A Region: 70 - 96 Aligned: 27 Modelled: 27 Confidence: 57.6% Identity: 37% PDB header:isomerase Chain: A: PDB Molecule:tryptophan biosynthesis protein trpcf; PDBTitle: three-dimensional structure of a truncated phosphoribosylanthranilate2 isomerase (residues 255-384) from escherichia coli Phyre2 PDB 1pii chain A domain 1 Region: 72 - 96 Aligned: 25 Modelled: 25 Confidence: 56.9% Identity: 40% Fold: TIM beta/alpha-barrel Superfamily: Ribulose-phoshate binding barrel Family: Tryptophan biosynthesis enzymes Phyre2 PDB 1v5x chain A Region: 73 - 96 Aligned: 24 Modelled: 24 Confidence: 48.6% Identity: 33% Fold: TIM beta/alpha-barrel Superfamily: Ribulose-phoshate binding barrel Family: Tryptophan biosynthesis enzymes Phyre2 PDB 1nsj chain A Region: 73 - 96 Aligned: 24 Modelled: 24 Confidence: 43.2% Identity: 29% Fold: TIM beta/alpha-barrel Superfamily: Ribulose-phoshate binding barrel Family: Tryptophan biosynthesis enzymes Phyre2 PDB 2i4r chain A domain 1 Region: 75 - 131 Aligned: 57 Modelled: 57 Confidence: 42.7% Identity: 18% Fold: AtpF-like Superfamily: AtpF-like Family: AtpF-like Phyre2 PDB 1pii chain A Region: 71 - 96 Aligned: 26 Modelled: 26 Confidence: 42.2% Identity: 38% PDB header:bifunctional(isomerase and synthase) Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase; PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase:3 indoleglycerolphosphate synthase from escherichia coli4 refined at 2.0 angstroms resolution Phyre2 PDB 2w40 chain C Region: 176 - 225 Aligned: 50 Modelled: 50 Confidence: 37.5% Identity: 22% PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol Phyre2 1 c3qoyA_ 2 d1ad2a_ 3 c3bboD_ 4 c2gyc2_ 5 d1mzpa_ 6 d1dwua_ 7 d1i2aa_ 8 c2zkr5_ 9 c1s1iA_ 10 c3iz5A_ 11 c2ftcA_ 12 d2j01c1 13 c2ov7C_ 14 c2kzhA_ 15 d1piia1 16 d1v5xa_ 17 d1nsja_ 18 d2i4ra1 19 c1piiA_ 20 c2w40C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qoyA_ 100.0 45 PDB header:ribosomal protein Chain: A: PDB Molecule:50s ribosomal protein l1; PDBTitle: crystal structure of ribosomal protein l1 from aquifex aeolicus 2 d1ad2a_ 100.0 50 Fold:Ribosomal protein L1 Superfamily:Ribosomal protein L1 Family:Ribosomal protein L1 3 c3bboD_ 100.0 45 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein l1; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 4 c2gyc2_ 100.0 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l1; PDBTitle: structure of the 50s subunit of a secm-stalled e. coli2 ribosome complex obtained by fitting atomic models for rna3 and protein components into cryo-em map emd-1143 5 d1mzpa_ 100.0 26 Fold:Ribosomal protein L1 Superfamily:Ribosomal protein L1 Family:Ribosomal protein L1 6 d1dwua_ 100.0 29 Fold:Ribosomal protein L1 Superfamily:Ribosomal protein L1 Family:Ribosomal protein L1 7 d1i2aa_ 100.0 29 Fold:Ribosomal protein L1 Superfamily:Ribosomal protein L1 Family:Ribosomal protein L1 8 c2zkr5_ 100.0 31 PDB header:ribosomal protein/rna Chain: 5: PDB Molecule:60s ribosomal protein l10a; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 9 c1s1iA_ 100.0 18 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 10 c3iz5A_ 100.0 22 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 11 c2ftcA_ 100.0 20 PDB header:ribosome Chain: A: PDB Molecule:mitochondrial ribosomal protein l1; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 12 d2j01c1 100.0 49 Fold:Ribosomal protein L1 Superfamily:Ribosomal protein L1 Family:Ribosomal protein L1 13 c2ov7C_ 100.0 59 PDB header:ribosomal protein Chain: C: PDB Molecule:50s ribosomal protein l1; PDBTitle: the first domain of the ribosomal protein l1 from thermus2 thermophilus 14 c2kzhA_ 57.6 37 PDB header:isomerase Chain: A: PDB Molecule:tryptophan biosynthesis protein trpcf; PDBTitle: three-dimensional structure of a truncated phosphoribosylanthranilate2 isomerase (residues 255-384) from escherichia coli 15 d1piia1 56.9 40 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 16 d1v5xa_ 48.6 33 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 17 d1nsja_ 43.2 29 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 18 d2i4ra1 42.7 18 Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like 19 c1piiA_ 42.2 38 PDB header:bifunctional(isomerase and synthase) Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase; PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase:3 indoleglycerolphosphate synthase from escherichia coli4 refined at 2.0 angstroms resolution 20 c2w40C_ 37.5 22 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 21 c3nbmA_ not modelled 33.2 15 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 22 d1qapa1 not modelled 25.6 24 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 23 c2ov6A_ not modelled 22.1 11 PDB header:hydrolase Chain: A: PDB Molecule:v-type atp synthase subunit f; PDBTitle: the nmr structure of subunit f of the methanogenic a1ao atp synthase2 and its interaction with the nucleotide-binding subunit b 24 d1o4ua1 not modelled 21.5 25 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 25 c2nqqA_ not modelled 21.1 28 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 26 c2vqpA_ not modelled 19.6 31 PDB header:viral protein Chain: A: PDB Molecule:matrix protein; PDBTitle: structure of the matrix protein from human respiratory2 syncytial virus 27 c3hz6A_ not modelled 19.2 13 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 28 c2l2qA_ not modelled 18.7 17 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 29 c2vhmI_ not modelled 16.8 12 PDB header:ribosome Chain: I: PDB Molecule:50s ribosomal protein l11; PDBTitle: structure of pdf binding helix in complex with the ribosome2 (part 1 of 4) 30 c3g25B_ not modelled 16.3 21 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 31 c3gbtA_ not modelled 16.0 16 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 32 c1xupO_ not modelled 15.4 15 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 33 c2d4wA_ not modelled 13.3 17 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 34 c2dpnB_ not modelled 13.1 15 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 35 c2nlxA_ not modelled 12.8 17 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 36 c3flcX_ not modelled 12.7 15 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 37 d2azeb1 not modelled 12.5 20 Fold:E2F-DP heterodimerization region Superfamily:E2F-DP heterodimerization region Family:E2F dimerization segment 38 c2zf5O_ not modelled 12.0 8 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 39 d1qpoa1 not modelled 11.6 15 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 40 c3ifrB_ not modelled 11.3 21 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 41 c2ftcG_ not modelled 10.5 39 PDB header:ribosome Chain: G: PDB Molecule:39s ribosomal protein l11, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 42 c3bboK_ not modelled 10.2 15 PDB header:ribosome Chain: K: PDB Molecule:ribosomal protein l11; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 43 d1k1ga_ not modelled 10.0 33 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 44 d1iiba_ not modelled 9.9 14 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 45 d2p3ra1 not modelled 9.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 46 d2nqra3 not modelled 9.5 28 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 47 c3jvpA_ not modelled 9.4 16 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 48 c3iz5J_ not modelled 9.1 43 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l12 (l11p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 49 c3enpA_ not modelled 8.7 18 PDB header:hydrolase Chain: A: PDB Molecule:tp53rk-binding protein; PDBTitle: crystal structure of human cgi121 50 d3cjsb1 not modelled 8.2 36 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 51 c3cjtP_ not modelled 7.9 36 PDB header:transferase/ribosomal protein Chain: P: PDB Molecule:50s ribosomal protein l11; PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11 52 d2d00a1 not modelled 7.6 17 Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like 53 c1glbG_ not modelled 7.5 15 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 54 c2i4rA_ not modelled 7.5 16 PDB header:hydrolase Chain: A: PDB Molecule:v-type atp synthase subunit f; PDBTitle: crystal structure of the v-type atp synthase subunit f from2 archaeoglobus fulgidus. nesg target gr52a. 55 c3gg4B_ not modelled 6.9 11 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 56 d1r59o1 not modelled 6.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 57 d1gtea2 not modelled 6.9 10 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 58 d2bl5a1 not modelled 6.8 25 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 59 c3ezwD_ not modelled 6.7 15 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 60 d1mmsa2 not modelled 6.7 33 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 61 c1qapA_ not modelled 6.6 24 PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid 62 c3gk0H_ not modelled 6.6 39 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 63 c1o4uA_ not modelled 6.5 23 PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution 64 c2hbpA_ not modelled 6.5 13 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 65 c2b7pA_ not modelled 6.4 20 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori 66 c3l0gD_ not modelled 6.4 7 PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution 67 c1xtzA_ not modelled 6.1 20 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 68 d2gycg2 not modelled 6.0 33 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 69 d1xbpg2 not modelled 5.8 33 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 70 d1vjpa1 not modelled 5.7 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 71 c1jqmA_ not modelled 5.6 29 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l11; PDBTitle: fitting of l11 protein and elongation factor g (ef-g) in2 the cryo-em map of e. coli 70s ribosome bound with ef-g,3 gdp and fusidic acid 72 d1qk1a2 not modelled 5.2 12 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 73 c2jbmA_ not modelled 5.2 31 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0