PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1mzpa_

Fold library id	Fold	Superfamily	Family
d1mzpa_	Ribosomal protein L1	Ribosomal protein L1	Ribosomal protein L1

Links to external resources
Added to library: Tue Mar 16 14:10:06 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M L A D K E S L I E A L K L A L S T E Y N V K R N F T Q S V E I I L T F K G I D X K K G D L K L R E I V P L P K Q P S K A K R V L V V P S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T
S S
S S
G G G T T T
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E Q L E Y A K K A S P K V V I T R E E L Q K L Q G Q K R P V K K L A R Q N E W F L I N Q E S X A L A G R I L G P A L G P R G K F P T P L P N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T
S
S
G G G T G G G T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T A D I S E Y I N R F K R S V L V K T K D Q P Q V Q V F I G T E D X K P E D L A E N A I A V L N A I E N K A K V E T N L R N I Y V K T T X G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T
S S S S T T S
T T T T T S

. . . . . . .

Sequence K A V K V K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	L	A	D	K	E	S	L	I	E	A	L	K	L	A	L	S	T	E	Y	N	V	K	R	N	F	T	Q	S	V	E	I	I	L	T	F	K	G	I	D	X	K	K	G	D	L	K	L	R	E	I	V	P	L	P	K	Q	P	S	K	A	K	R	V	L	V	V	P	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	T	T	T					S	S											S	S			G	G	G	T	T	T									S	S			S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	Q	L	E	Y	A	K	K	A	S	P	K	V	V	I	T	R	E	E	L	Q	K	L	Q	G	Q	K	R	P	V	K	K	L	A	R	Q	N	E	W	F	L	I	N	Q	E	S	X	A	L	A	G	R	I	L	G	P	A	L	G	P	R	G	K	F	P	T	P	L	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T			S												T	T											S		S						G	G	G								T					G	G	G	T								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	A	D	I	S	E	Y	I	N	R	F	K	R	S	V	L	V	K	T	K	D	Q	P	Q	V	Q	V	F	I	G	T	E	D	X	K	P	E	D	L	A	E	N	A	I	A	V	L	N	A	I	E	N	K	A	K	V	E	T	N	L	R	N	I	Y	V	K	T	T	X	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S											T							S	S	S	S									T	T	S																							T	T	T									T	T	S
	.	.	.	.	.	.	.
Sequence	K	A	V	K	V	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)