PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2gyc2_

Fold library id	PDB Header	Molecule	Title
c2gyc2_	PDB header: ribosome	Chain: 2: PDB Molecule: 50s ribosomal protein l1;	PDBTitle: structure of the 50s subunit of a secm-stalled e. coli2 ribosome complex obtained by fitting atomic models for rna3 and protein components into cryo-em map emd-1143

Links to external resources
Added to library: Tue Mar 16 14:00:02 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K R M R V I R E K V D A T K Q Y D I N E A I A L L K E L A T A K F V E S V D V A V N L G I D A R K S D Q N V R G A T V L P H G T G R S V R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S S
B
T T
S S S
S
S S
G G G
S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V F T Q G A N A E A A K A A G A E L V G M E D L A D Q I K K G E M N F D V V I A S P D A M R V V G Q L G Q V L G P R G L M P N P K V G T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
S
T T T
S
G G G S T T T T T T
S
T T T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T P N V A E A V K N A K A G Q V R Y R N D K N G I I H T T I G K V D F D A D K L K E N L E A L L V A L K K A K P T Q A K G V Y I K K V S I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S S S
B
T T S
T T
S S
S
S

. . . . . . . . . 220 . .

Sequence T T M G A G V A V D Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	R	M	R	V	I	R	E	K	V	D	A	T	K	Q	Y	D	I	N	E	A	I	A	L	L	K	E	L	A	T	A	K	F	V	E	S	V	D	V	A	V	N	L	G	I	D	A	R	K	S	D	Q	N	V	R	G	A	T	V	L	P	H	G	T	G	R	S	V	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T					T	T			S	S	S		B												T	T		S	S	S												S		S	S		G	G	G													S	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	F	T	Q	G	A	N	A	E	A	A	K	A	A	G	A	E	L	V	G	M	E	D	L	A	D	Q	I	K	K	G	E	M	N	F	D	V	V	I	A	S	P	D	A	M	R	V	V	G	Q	L	G	Q	V	L	G	P	R	G	L	M	P	N	P	K	V	G	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T							T	T	T		S					T	T								T					S						G	G	G	S					T	T					T	T	T	T		S			T	T	T	T		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	P	N	V	A	E	A	V	K	N	A	K	A	G	Q	V	R	Y	R	N	D	K	N	G	I	I	H	T	T	I	G	K	V	D	F	D	A	D	K	L	K	E	N	L	E	A	L	L	V	A	L	K	K	A	K	P	T	Q	A	K	G	V	Y	I	K	K	V	S	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S										S										S	S	S		B							T	T	S																		T	T			S	S			S		S
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	T	T	M	G	A	G	V	A	V	D	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S