PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3iz5A_

Fold library id	PDB Header	Molecule	Title
c3iz5A_	PDB header: ribosome	Chain: A: PDB Molecule: 60s ribosomal protein l1 (l1p);	PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Links to external resources
Added to library: Sat Dec 11 13:45:41 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S K L Q S D A V K D A I T Q I V G E A R E K K R K F T E T V E L Q I G L K N Y D P Q K D K R F S G S V K L P H I P R P K M R V C M L G D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T G G G S
S S
T T T S S S S T T
S S
S S S T T
B
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q H V D Q A E K M G L D Y M D V E S L K K M N K N K K L V K K L A K K Y H A F L A S E A I I K Q I P R L L G P G L N K A G K F P T L V S H Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
G G G T
S
T T T T T T
S
T T T T
B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E S L E A K V N E T K A T V K F Q L K K V L C M G V A V G N L S M D E K Q I Q Q N I Q M S V N F L V S L L K K N W Q N V R C L Y V K S T M G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B
T T S T T S
S S
S
S
S
S S

. . . . . .

Sequence K R V R V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	K	L	Q	S	D	A	V	K	D	A	I	T	Q	I	V	G	E	A	R	E	K	K	R	K	F	T	E	T	V	E	L	Q	I	G	L	K	N	Y	D	P	Q	K	D	K	R	F	S	G	S	V	K	L	P	H	I	P	R	P	K	M	R	V	C	M	L	G	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	G	G	G	S		S	S					T	T	T	S	S	S	S	T	T								S	S														S	S	S	T	T							B		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	H	V	D	Q	A	E	K	M	G	L	D	Y	M	D	V	E	S	L	K	K	M	N	K	N	K	K	L	V	K	K	L	A	K	K	Y	H	A	F	L	A	S	E	A	I	I	K	Q	I	P	R	L	L	G	P	G	L	N	K	A	G	K	F	P	T	L	V	S	H	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T									T		S					G	G	G							T					S						T	T	T													T	T	T		S			T	T	T	T		B		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	S	L	E	A	K	V	N	E	T	K	A	T	V	K	F	Q	L	K	K	V	L	C	M	G	V	A	V	G	N	L	S	M	D	E	K	Q	I	Q	Q	N	I	Q	M	S	V	N	F	L	V	S	L	L	K	K	N	W	Q	N	V	R	C	L	Y	V	K	S	T	M	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	B							T	T	S									T	T	S																						S	S			S		S		S							S	S
	.	.	.	.	.	.
Sequence	K	R	V	R	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)