Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	P	Q	C	K	F	S	R	E	F	L	H	P	R	Y	W	L	T	W	F	G	L	G	V	L	W	L	W	V	Q	L	P	Y	P	V	L	C	F	L	G	T	R	I	G	A	M	A	R	P	F	L	K	R	R	E	S	I	A	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	N	L	E	L	C	F	P	Q	H	S	A	E	E	R	E	K	M	I	A	E	N	F	R	S	L	G	M	A	L	V	E	T	G	M	A	W	F	W	P	D	S	R	V	R	K	W	F	D	V	E	G	L	D	N	L	K	R	A	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	Q	N	R	G	V	M	V	V	G	V	H	F	M	S	L	E	L	G	G	R	V	M	G	L	C	Q	P	M	M	A	T	Y	R	P	H	N	N	Q	L	M	E	W	V	Q	T	R	G	R	M	R	S	N	K	A	M	I	G	R	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	L	R	G	I	V	G	A	L	K	K	G	E	A	V	W	F	A	P	D	Q	D	Y	G	R	K	G	S	S	F	A	P	F	F	A	V	E	N	V	A	T	T	N	G	T	Y	V	L	S	R	L	S	G	A	A	M	L	T	V	T
Secondary structure
SS confidence
Disorder																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	V	R	K	A	D	Y	S	G	Y	R	L	F	I	T	P	E	M	E	G	Y	P	T	D	E	N	Q	A	A	A	Y	M	N	K	I	I	E	K	E	I	M	R	A	P	E	Q	Y	L	W	I	H	R	R	F	K	T	R	P	V	G
Secondary structure
SS confidence
Disorder																				?	?
Disorder confidence
		.	.	.	.	.	.
Sequence		E	S	S	L	Y	I
Secondary structure
SS confidence
Disorder			?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j5b chain A Region: 109 - 136 Aligned: 28 Modelled: 28 Confidence: 52.6% Identity: 25% PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol Phyre2 PDB 1ltx chain A Region: 259 - 294 Aligned: 36 Modelled: 36 Confidence: 42.3% Identity: 22% PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Phyre2 PDB 3cwc chain B Region: 221 - 281 Aligned: 61 Modelled: 61 Confidence: 41.5% Identity: 5% PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 Phyre2 PDB 3lub chain E Region: 113 - 135 Aligned: 23 Modelled: 23 Confidence: 36.9% Identity: 17% PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution Phyre2 PDB 3no4 chain A Region: 113 - 143 Aligned: 31 Modelled: 31 Confidence: 33.5% Identity: 6% PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution Phyre2 PDB 1hru chain A Region: 177 - 204 Aligned: 28 Modelled: 28 Confidence: 27.3% Identity: 11% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 1v7z chain A Region: 113 - 143 Aligned: 31 Modelled: 31 Confidence: 26.8% Identity: 10% Fold: Creatininase Superfamily: Creatininase Family: Creatininase Phyre2 PDB 1g9s chain A Region: 100 - 215 Aligned: 116 Modelled: 116 Confidence: 20.5% Identity: 13% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2cyc chain B Region: 109 - 136 Aligned: 28 Modelled: 28 Confidence: 20.4% Identity: 14% PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii Phyre2 PDB 2pen chain E Region: 267 - 306 Aligned: 37 Modelled: 37 Confidence: 18.2% Identity: 30% PDB header:chaperone Chain: E: PDB Molecule:orf134; PDBTitle: crystal structure of rbcx, crystal form i Phyre2 PDB 3khs chain B Region: 188 - 286 Aligned: 91 Modelled: 99 Confidence: 18.0% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase Phyre2 PDB 1nkt chain A domain 4 Region: 113 - 180 Aligned: 66 Modelled: 66 Confidence: 16.9% Identity: 15% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1d7y chain A domain 2 Region: 110 - 177 Aligned: 68 Modelled: 68 Confidence: 16.3% Identity: 12% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD/NAD-linked reductases, N-terminal and central domains Phyre2 PDB 1fcu chain A Region: 56 - 92 Aligned: 37 Modelled: 37 Confidence: 15.5% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase Phyre2 PDB 1fcq chain A Region: 56 - 92 Aligned: 37 Modelled: 37 Confidence: 14.7% Identity: 14% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Bee venom hyaluronidase Phyre2 PDB 1tuw chain A Region: 270 - 287 Aligned: 18 Modelled: 18 Confidence: 13.9% Identity: 6% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Polyketide synthesis cyclase Phyre2 PDB 1k7j chain A Region: 178 - 204 Aligned: 27 Modelled: 27 Confidence: 13.7% Identity: 19% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 2pe4 chain A Region: 56 - 92 Aligned: 37 Modelled: 37 Confidence: 13.4% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-1; PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis Phyre2 PDB 1r6u chain B Region: 111 - 136 Aligned: 26 Modelled: 26 Confidence: 13.4% Identity: 19% PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity Phyre2 PDB 1d8d chain A Region: 274 - 294 Aligned: 21 Modelled: 21 Confidence: 12.9% Identity: 38% Fold: alpha-alpha superhelix Superfamily: Protein prenylyltransferase Family: Protein prenylyltransferase Phyre2 1 c2j5bA_ 2 c1ltxA_ 3 c3cwcB_ 4 c3lubE_ 5 c3no4A_ 6 d1hrua_ 7 d1v7za_ 8 d1g9sa_ 9 c2cycB_ 10 c2penE_ 11 c3khsB_ 12 d1nkta4 13 d1d7ya2 14 c1fcuA_ 15 d1fcqa_ 16 d1tuwa_ 17 d1k7ja_ 18 c2pe4A_ 19 c1r6uB_ 20 d1d8da_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j5bA_ 52.6 25 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol 2 c1ltxA_ 42.3 22 PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid 3 c3cwcB_ 41.5 5 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 4 c3lubE_ 36.9 17 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 5 c3no4A_ 33.5 6 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 6 d1hrua_ 27.3 11 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 7 d1v7za_ 26.8 10 Fold:Creatininase Superfamily:Creatininase Family:Creatininase 8 d1g9sa_ 20.5 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 9 c2cycB_ 20.4 14 PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii 10 c2penE_ 18.2 30 PDB header:chaperone Chain: E: PDB Molecule:orf134; PDBTitle: crystal structure of rbcx, crystal form i 11 c3khsB_ 18.0 13 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 12 d1nkta4 16.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 13 d1d7ya2 16.3 12 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 14 c1fcuA_ 15.5 14 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase 15 d1fcqa_ 14.7 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Bee venom hyaluronidase 16 d1tuwa_ 13.9 6 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Polyketide synthesis cyclase 17 d1k7ja_ 13.7 19 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 18 c2pe4A_ 13.4 16 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-1; PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis 19 c1r6uB_ 13.4 19 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity 20 d1d8da_ 12.9 38 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 21 d2peqa1 not modelled 12.2 30 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 22 d1r6ta2 not modelled 12.0 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 23 d1jcua_ not modelled 12.0 22 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 24 c2quiB_ not modelled 11.9 19 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structures of human tryptophanyl-trna synthetase in2 complex with tryptophanamide and atp 25 d1pyfa_ not modelled 11.8 14 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 26 d1p3qq_ not modelled 11.4 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 27 c1tcvB_ not modelled 11.3 20 PDB header:transferase Chain: B: PDB Molecule:purine-nucleoside phosphorylase; PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate 28 d1iyjb4 not modelled 11.0 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 29 c2advB_ not modelled 11.0 8 PDB header:hydrolase Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism 30 d1fl2a2 not modelled 10.5 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 31 c2rjnA_ not modelled 10.2 11 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 32 d1mn3a_ not modelled 10.0 12 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 33 c2p4sA_ not modelled 9.9 9 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: structure of purine nucleoside phosphorylase from anopheles gambiae in2 complex with dadme-immh 34 d1nj8a2 not modelled 9.8 33 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 35 c2ip1A_ not modelled 9.3 15 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase 36 c2h3oA_ not modelled 9.2 23 PDB header:membrane protein Chain: A: PDB Molecule:merf; PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices 37 d3eeqa2 not modelled 9.2 13 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 38 c1xuzA_ not modelled 8.9 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 39 c2l7kA_ not modelled 8.3 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cd1104.2 from clostridium difficile,2 northeast structural genomics consortium target cfr130 40 d1a9xb1 not modelled 8.3 16 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain 41 d1nj1a2 not modelled 8.2 23 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 42 d2py8a1 not modelled 8.2 14 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 43 c1tnoI_ not modelled 8.2 36 PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b 44 c1jzdA_ not modelled 8.1 22 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 45 c3rpfB_ not modelled 8.1 18 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase catalytic subunit; PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 46 c2ntxB_ not modelled 8.0 16 PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; 47 c3g8rA_ not modelled 8.0 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 48 d1c0ma1 not modelled 7.9 6 Fold:SH3-like barrel Superfamily:DNA-binding domain of retroviral integrase Family:DNA-binding domain of retroviral integrase 49 d1gm5a4 not modelled 7.9 6 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 50 d1cv8a_ not modelled 7.9 12 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 51 c3tmgA_ not modelled 7.6 17 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 52 d2pi8a1 not modelled 7.6 20 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 53 d1iuqa_ not modelled 7.5 13 Fold:Glycerol-3-phosphate (1)-acyltransferase Superfamily:Glycerol-3-phosphate (1)-acyltransferase Family:Glycerol-3-phosphate (1)-acyltransferase 54 c2khzB_ not modelled 7.4 23 PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl 55 d2h6fa1 not modelled 7.4 38 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 56 d1v4na_ not modelled 7.2 19 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 57 c2b8eB_ not modelled 7.2 23 PDB header:membrane protein Chain: B: PDB Molecule:cation-transporting atpase; PDBTitle: copa atp binding domain 58 d1vdca2 not modelled 7.1 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 59 d1mkya3 not modelled 7.1 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain 60 c3ggsA_ not modelled 7.0 14 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine 61 c3l6gA_ not modelled 6.8 12 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 62 c3focB_ not modelled 6.8 8 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia 63 d1zj8a4 not modelled 6.7 17 Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like 64 c1t3bA_ not modelled 6.6 11 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 65 c1w8xP_ not modelled 6.6 43 PDB header:virus Chain: P: PDB Molecule:protein p16; PDBTitle: structural analysis of prd1 66 d1xhca2 not modelled 6.5 13 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 67 c3f6tA_ not modelled 6.4 8 PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution 68 c3hv0A_ not modelled 6.4 15 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum 69 d1vlia2 not modelled 6.2 20 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 70 c3s29C_ not modelled 6.2 19 PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. 71 c2cyaA_ not modelled 6.2 19 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase from aeropyrum pernix 72 d2ocda1 not modelled 6.1 7 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 73 c3t4cD_ not modelled 6.1 12 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria 74 d1v58a1 not modelled 6.1 33 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 75 d2ae0x1 not modelled 6.0 19 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:MLTA-like 76 d1pxva_ not modelled 5.9 11 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 77 c2omdB_ not modelled 5.7 25 PDB header:lyase Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5 78 d2nrqa1 not modelled 5.6 14 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 79 d1r71a_ not modelled 5.5 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 80 c2nzzA_ not modelled 5.5 56 PDB header:membrane protein Chain: A: PDB Molecule:penetratin conjugated gas (374-394) peptide; PDBTitle: nmr structure analysis of the penetratin conjugated gas2 (374-394) peptide 81 d1dcea1 not modelled 5.4 29 Fold:alpha-alpha superhelix Superfamily:Protein prenylyltransferase Family:Protein prenylyltransferase 82 c3jxeB_ not modelled 5.4 27 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp 83 d1tf5a4 not modelled 5.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 84 d1ur3m_ not modelled 5.4 12 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 85 c2eqaA_ not modelled 5.4 19 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii 86 c2ou2A_ not modelled 5.4 11 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase htatip; PDBTitle: acetyltransferase domain of human hiv-1 tat interacting2 protein, 60kda, isoform 3 87 c3m8yC_ not modelled 5.2 14 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 88 d1q1ra2 not modelled 5.2 9 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 89 c3nurA_ not modelled 5.2 15 PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of a putative amidohydrolase from staphylococcus2 aureus 90 d1eeja1 not modelled 5.1 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 91 c3ihjA_ not modelled 5.1 11 PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp 92 c2pkaB_ not modelled 5.0 19 PDB header:serine proteinase Chain: B: PDB Molecule:kallikrein a; PDBTitle: refined 2 angstroms x-ray crystal structure of porcine2 pancreatic kallikrein a, a specific trypsin-like serine3 proteinase. crystallization, structure determination,4 crystallographic refinement, structure and its comparison5 with bovine trypsin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0