Email l.a.kelley@imperial.ac.uk Description P30850 Date Wed Jan 25 15:20:48 GMT 2012 Unique Job ID 8850cac2b6037c84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ix1A_ 100.0 99 PDB header:hydrolase Chain: A: PDB Molecule:exoribonuclease 2; PDBTitle: rnase ii d209n mutant 2 c2wp8J_ 100.0 21 PDB header:hydrolase Chain: J: PDB Molecule:exosome complex exonuclease dis3; PDBTitle: yeast rrp44 nuclease 3 c2vnuD_ 100.0 20 PDB header:hydrolase/rna Chain: D: PDB Molecule:exosome complex exonuclease rrp44; PDBTitle: crystal structure of sc rrp44 4 c2r7fA_ 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease ii family protein; PDBTitle: crystal structure of ribonuclease ii family protein from deinococcus2 radiodurans, hexagonal crystal form. northeast structural genomics3 target drr63 5 d2ix0a4 100.0 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 6 d2vnud4 100.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 7 d2r7da2 100.0 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 8 d2ix0a2 99.6 96 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 9 d2ix0a1 99.5 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 10 d2vnud3 99.3 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 11 d2vnud1 99.1 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 12 d2ix0a3 98.9 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 13 d1go3e1 98.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 d2c35b1 98.8 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 15 c3h0gS_ 98.8 13 PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 16 d1kl9a2 98.5 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 17 c2c35F_ 98.5 16 PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii 18 c2k52A_ 98.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 19 c2b8kG_ 98.5 20 PDB header:transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: 12-subunit rna polymerase ii 20 d1y14b1 98.5 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 21 c1q46A_ not modelled 98.4 17 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia 22 c1yz6A_ not modelled 98.4 19 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 alpha PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi 23 d1q46a2 not modelled 98.3 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 24 c1go3E_ not modelled 98.3 16 PDB header:transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: structure of an archeal homolog of the eukaryotic rna2 polymerase ii rpb4/rpb7 complex 25 c2khiA_ not modelled 98.3 21 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 26 c2cqoA_ not modelled 98.2 13 PDB header:ribosome Chain: A: PDB Molecule:nucleolar protein of 40 kda; PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067 27 c1q8kA_ not modelled 98.2 19 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 PDBTitle: solution structure of alpha subunit of human eif2 28 c1nt9G_ not modelled 98.1 21 PDB header:transcription, transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii 29 c2k4kA_ not modelled 98.0 17 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 30 c2ahoB_ not modelled 98.0 26 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit; PDBTitle: structure of the archaeal initiation factor eif2 alpha-2 gamma heterodimer from sulfolobus solfataricus complexed3 with gdpnp 31 c2khjA_ not modelled 98.0 23 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 32 d3bzka4 not modelled 98.0 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 33 c1kl9A_ not modelled 98.0 27 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 subunit 1; PDBTitle: crystal structure of the n-terminal segment of human eukaryotic2 initiation factor 2alpha 34 c2pmzE_ not modelled 98.0 12 PDB header:translation, transferase Chain: E: PDB Molecule:dna-directed rna polymerase subunit e; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 35 c3psiA_ not modelled 97.9 4 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 36 c2eqsA_ not modelled 97.9 14 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dhx8; PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8 37 c2oceA_ not modelled 97.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 38 d2ahob2 not modelled 97.9 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 39 c2ckzB_ not modelled 97.8 9 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase iii 25 kd PDBTitle: x-ray structure of rna polymerase iii subcomplex c17-c25. 40 d2vnud2 not modelled 97.8 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 41 d2ba0a1 not modelled 97.8 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 42 c3go5A_ not modelled 97.7 18 PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution 43 d1sroa_ not modelled 97.7 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 44 c1l2fA_ not modelled 97.6 18 PDB header:transcription Chain: A: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain 45 d2je6i1 not modelled 97.6 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 46 d1wi5a_ not modelled 97.6 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 47 d2z0sa1 not modelled 97.6 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 48 d1hh2p1 not modelled 97.4 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 49 c1hh2P_ not modelled 97.2 23 PDB header:transcription regulation Chain: P: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima 50 d2nn6h1 not modelled 97.1 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 51 d1g6pa_ not modelled 97.0 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 52 d1a62a2 not modelled 96.9 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 c2z0sA_ not modelled 96.8 18 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 54 c2ytxA_ not modelled 96.6 28 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein) 55 c2k5nA_ not modelled 96.6 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cold-shock protein; PDBTitle: solution nmr structure of the n-terminal domain of protein2 eca1580 from erwinia carotovora, northeast structural3 genomics consortium target ewr156a 56 c2a8vA_ not modelled 96.5 23 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 57 d1smxa_ not modelled 96.5 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 58 c3a0jB_ not modelled 96.4 25 PDB header:transcription Chain: B: PDB Molecule:cold shock protein; PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8 59 d1mjca_ not modelled 96.4 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 60 c3aqqD_ not modelled 96.3 23 PDB header:dna binding protein Chain: D: PDB Molecule:calcium-regulated heat stable protein 1; PDBTitle: crystal structure of human crhsp-24 61 c2kcmA_ not modelled 96.2 23 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. 62 d2nn6i1 not modelled 96.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 c2ba0A_ not modelled 96.1 17 PDB header:rna binding protein Chain: A: PDB Molecule:archeal exosome rna binding protein rrp4; PDBTitle: archaeal exosome core 64 d2es2a1 not modelled 96.1 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 65 d1h95a_ not modelled 96.1 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 66 c3ayhB_ not modelled 96.0 20 PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase iii subunit rpc8; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii 67 d1wfqa_ not modelled 95.9 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 68 c3camB_ not modelled 95.7 25 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 69 d1c9oa_ not modelled 95.6 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 70 c1uwvA_ not modelled 95.6 17 PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase 71 c2rf4A_ not modelled 95.4 12 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 72 c2bh8B_ not modelled 95.3 21 PDB header:transcription Chain: B: PDB Molecule:1b11; PDBTitle: combinatorial protein 1b11 73 c2nn6I_ not modelled 95.2 13 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 74 d1uwva1 not modelled 95.1 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 75 c2ytyA_ not modelled 94.9 22 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein) 76 c2je6I_ not modelled 94.8 18 PDB header:hydrolase Chain: I: PDB Molecule:exosome complex rna-binding protein 1; PDBTitle: structure of a 9-subunit archaeal exosome 77 d1luza_ not modelled 94.7 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 78 c3trzE_ not modelled 94.1 23 PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element 79 c1xpuB_ not modelled 92.9 31 PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) 80 c2ba1B_ not modelled 92.3 16 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 81 c1x65A_ not modelled 91.6 19 PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein) 82 c2vs1A_ not modelled 89.7 35 PDB header:transferase Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780; PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine 83 d1yvca1 not modelled 89.4 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 84 d1jjga_ not modelled 89.1 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 85 d1jt8a_ not modelled 87.4 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 86 d1yeza1 not modelled 84.4 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 87 c2ytvA_ not modelled 84.0 20 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein) 88 c3i4oA_ not modelled 83.2 13 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 89 c2oqkA_ not modelled 82.4 14 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 90 d1u0la1 not modelled 81.9 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 91 c2yv5A_ not modelled 81.3 17 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 92 d1ah9a_ not modelled 81.3 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 93 c3l0oB_ not modelled 80.1 41 PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima 94 c2dgyA_ not modelled 69.6 19 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 95 d2nn6g1 not modelled 68.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 96 c2i38A_ not modelled 67.1 16 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 97 c2eqkA_ not modelled 65.0 17 PDB header:transcription Chain: A: PDB Molecule:tudor domain-containing protein 4; PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4 98 d1hr0w_ not modelled 64.9 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 99 c2rcnA_ not modelled 62.5 16 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 100 c2hqxB_ not modelled 61.9 14 PDB header:transcription Chain: B: PDB Molecule:p100 co-activator tudor domain; PDBTitle: crystal structure of human p100 tudor domain conserved2 region 101 d2hqxa1 not modelled 61.9 14 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 102 c3d0fA_ not modelled 60.1 21 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 103 c1k0rB_ not modelled 59.3 24 PDB header:transcription Chain: B: PDB Molecule:nusa; PDBTitle: crystal structure of mycobacterium tuberculosis nusa 104 d1t9ha1 not modelled 59.3 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 105 d1f39a_ not modelled 56.6 12 Fold:LexA/Signal peptidase Superfamily:LexA/Signal peptidase Family:LexA-related 106 c2wacA_ not modelled 52.7 17 PDB header:splicing Chain: A: PDB Molecule:cg7008-pa; PDBTitle: extended tudor domain of drosophila melanogaster tudor-sn (2 p100) 107 c4a4fA_ not modelled 51.0 22 PDB header:rna binding protein Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30; PDBTitle: solution structure of spf30 tudor domain in complex with2 symmetrically dimethylated arginine 108 d1e3pa2 not modelled 50.4 31 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 109 d1mhna_ not modelled 49.0 17 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 110 c2xnqA_ not modelled 49.0 16 PDB header:rna binding protein Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3; PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm 111 d2diqa1 not modelled 48.9 20 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 112 c3metB_ not modelled 48.5 13 PDB header:transcription Chain: B: PDB Molecule:saga-associated factor 29 homolog; PDBTitle: crystal structure of sgf29 in complex with h3k4me2 113 d1d7qa_ not modelled 48.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 114 c2d9tA_ not modelled 43.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tudor domain-containing protein 3; PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse 115 c2c4rL_ not modelled 43.0 18 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 116 c3pnwX_ not modelled 42.8 17 PDB header:protein binding/immune system Chain: X: PDB Molecule:tudor domain-containing protein 3; PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab 117 c1g5vA_ not modelled 38.4 17 PDB header:translation Chain: A: PDB Molecule:survival motor neuron protein 1; PDBTitle: solution structure of the tudor domain of the human smn2 protein 118 d2ja9a1 not modelled 37.3 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 119 d2cqda1 not modelled 36.9 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 120 d2asba1 not modelled 35.8 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like