Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77212
DateThu Jan 5 12:26:22 GMT 2012
Unique Job ID868a11ddb42ac785

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1dxlC_
Top template information
PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
Confidence and coverage
Confidence:100.0% Coverage: 99%
435 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ
Secondary structure 


















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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHG
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???
?




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   .........130.........140.........150.........160.........170.........180
Sequence  EKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANF
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   .........190.........200.........210.........220.........230.........240
Sequence  GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ
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Disorder 














?






























?
?









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   .........250.........260.........270.........280.........290.........300
Sequence  LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGDVTGGLQFT
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   .........310.........320.........330.........340.........350.........360
Sequence  YISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTL
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?

?





































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   .........370.........380.........390.........400.........410.........420
Sequence  PVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDSHEMINIVKMVMDAGLPYSILR
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?





















































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   .........430.........440.
Sequence  DQIFTHPSMSESLNDLFSLVK
Secondary structure 








SS confidence 




















Disorder 


















??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1dxl chain C

3D model

Region: 2 - 440
Aligned: 435
Modelled: 439
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum

Phyre2

PDB 1ojt chain A

3D model

Region: 2 - 440
Aligned: 434
Modelled: 439
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:surface protein;
PDBTitle: structure of dihydrolipoamide dehydrogenase

Phyre2

PDB 2eq8 chain E

3D model

Region: 1 - 441
Aligned: 430
Modelled: 441
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp

Phyre2

PDB 2eq7 chain B

3D model

Region: 4 - 440
Aligned: 430
Modelled: 437
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo

Phyre2

PDB 1zmc chain G

3D model

Region: 3 - 437
Aligned: 432
Modelled: 435
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+

Phyre2

PDB 2qae chain A

3D model

Region: 2 - 440
Aligned: 435
Modelled: 439
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase

Phyre2

PDB 1ebd chain B

3D model

Region: 1 - 440
Aligned: 433
Modelled: 440
Confidence: 100.0%
Identity: 29%
PDB header:complex (oxidoreductase/transferase)
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase

Phyre2

PDB 1lpf chain B

3D model

Region: 2 - 440
Aligned: 436
Modelled: 438
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties

Phyre2

PDB 3urh chain B

3D model

Region: 4 - 440
Aligned: 434
Modelled: 437
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021

Phyre2

PDB 1bwc chain A

3D model

Region: 1 - 438
Aligned: 432
Modelled: 438
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (glutathione reductase);
PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate

Phyre2

PDB 2a8x chain A

3D model

Region: 3 - 440
Aligned: 434
Modelled: 438
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis

Phyre2

PDB 2r9z chain B

3D model

Region: 2 - 441
Aligned: 430
Modelled: 440
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione amide reductase;
PDBTitle: glutathione amide reductase from chromatium gracile

Phyre2

PDB 1v59 chain B

3D model

Region: 1 - 440
Aligned: 436
Modelled: 440
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+

Phyre2

PDB 1zx9 chain A

3D model

Region: 4 - 440
Aligned: 431
Modelled: 437
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: crystal structure of tn501 mera

Phyre2

PDB 1xdi chain A

3D model

Region: 1 - 440
Aligned: 434
Modelled: 438
Confidence: 100.0%
Identity: 22%
PDB header:unknown function
Chain: A: PDB Molecule:rv3303c-lpda;
PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis

Phyre2

PDB 3ic9 chain D

3D model

Region: 1 - 440
Aligned: 434
Modelled: 439
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.

Phyre2

PDB 1tyt chain A

3D model

Region: 1 - 440
Aligned: 439
Modelled: 440
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase, oxidized form;
PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution

Phyre2

PDB 2c3d chain B

3D model

Region: 2 - 441
Aligned: 433
Modelled: 440
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site

Phyre2

PDB 2w0h chain A

3D model

Region: 2 - 439
Aligned: 437
Modelled: 438
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph

Phyre2

PDB 2v6o chain A

3D model

Region: 3 - 436
Aligned: 429
Modelled: 434
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin glutathione reductase;
PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)

Phyre2
1

c1dxlC_
2

c1ojtA_
3

c2eq8E_
4

c2eq7B_
5

c1zmcG_
6

c2qaeA_
7

c1ebdB_
8

c1lpfB_
9

c3urhB_
10

c1bwcA_
11

c2a8xA_
12

c2r9zB_
13

c1v59B_
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c1zx9A_
15

c1xdiA_
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c3ic9D_
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c1tytA_
18

c2c3dB_
19

c2w0hA_
20

c2v6oA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1dxlC_



100.0 28 PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
2c1ojtA_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:surface protein;
PDBTitle: structure of dihydrolipoamide dehydrogenase
3c2eq8E_



100.0 26 PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
4c2eq7B_



100.0 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
5c1zmcG_



100.0 26 PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
6c2qaeA_



100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase
7c1ebdB_



100.0 29 PDB header:complex (oxidoreductase/transferase)
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
8c1lpfB_



100.0 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
9c3urhB_



100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021
10c1bwcA_



100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (glutathione reductase);
PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate
11c2a8xA_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
12c2r9zB_



100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione amide reductase;
PDBTitle: glutathione amide reductase from chromatium gracile
13c1v59B_



100.0 29 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
14c1zx9A_



100.0 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: crystal structure of tn501 mera
15c1xdiA_



100.0 22 PDB header:unknown function
Chain: A: PDB Molecule:rv3303c-lpda;
PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
16c3ic9D_



100.0 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
17c1tytA_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase, oxidized form;
PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution
18c2c3dB_



100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site
19c2w0hA_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
20c2v6oA_



100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin glutathione reductase;
PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)
21c3o0hA_



not modelled 100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
22c1lvlA_



not modelled 100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution
23c1geuA_



not modelled 100.0 29 PDB header:oxidoreductase(flavoenzyme)
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: anatomy of an engineered nad-binding site
24c1ndaD_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:trypanothione oxidoreductase;
PDBTitle: the structure of trypanosoma cruzi trypanothione reductase2 in the oxidized and nadph reduced state
25c3l8kB_



not modelled 100.0 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus
26c3dgzA_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
27c1zkqA_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial;
PDBTitle: crystal structure of mouse thioredoxin reductase type 2
28c2hqmB_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae
29c2nvkX_



not modelled 100.0 26 PDB header:oxidoreductase
Chain: X: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
30c2bcpA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide
31c2cfyB_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of human thioredoxin reductase 1
32c3kd9B_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii
33c3ntaA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
34c3icrA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
35c1onfA_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of plasmodium falciparum glutathione reductase
36c3cgdB_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridine nucleotide-disulfide oxidoreductase, class i;
PDBTitle: pyridine nucleotide complexes with bacillus anthracis coenzyme a-2 disulfide reductase: a structural analysis of dual nad(p)h3 specificity
37c2cduB_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph oxidase;
PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis
38c3oc4A_



not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, pyridine nucleotide-disulfide family;
PDBTitle: crystal structure of a pyridine nucleotide-disulfide family2 oxidoreductase from the enterococcus faecalis v583
39c1nhqA_



not modelled 100.0 18 PDB header:oxidoreductase (h2o2(a))
Chain: A: PDB Molecule:nadh peroxidase;
PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303
40c1yqzA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a disulfide reductase;
PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution
41c3iwaA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris
42c1gv4A_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:programed cell death protein 8;
PDBTitle: murine apoptosis-inducing factor (aif)
43c3fg2P_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: P: PDB Molecule:putative rubredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase for the cyp199a2 system from2 rhodopseudomonas palustris
44c3lxdA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans
45c1m6iA_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:programmed cell death protein 8;
PDBTitle: crystal structure of apoptosis inducing factor (aif)
46c2gr2A_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin reductase;
PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form)
47c3kljA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal
PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum
48c1q1wA_



not modelled 100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putidaredoxin reductase;
PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida
49c3ef6A_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+)
PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase
50c2v3aA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin reductase;
PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa.
51c1xhcA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase /nitrite reductase;
PDBTitle: nadh oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779-2 001
52c1hyuA_



not modelled 100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
53c3hyxC_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfide-quinone reductase;
PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c
54c3kpgA_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfide-quinone reductase, putative;
PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone
55c1gthD_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
56c2zbwA_



not modelled 100.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8
57c3ctyA_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of t. acidophilum thioredoxin reductase
58c1fl2A_



not modelled 100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: catalytic core component of the alkylhydroperoxide reductase ahpf from2 e.coli
59d3grsa1



not modelled 100.0 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
60c3r9uA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: thioredoxin-disulfide reductase from campylobacter jejuni.
61c1fcdB_



not modelled 100.0 14 PDB header:electron transport(flavocytochrome)
Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin-
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
62c3fbsB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
63c1vdcA_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dependent thioredoxin reductase;
PDBTitle: structure of nadph dependent thioredoxin reductase
64c2vdcI_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
65c3f8rD_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: D: PDB Molecule:thioredoxin reductase (trxb-3);
PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules
66c2q7vA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase
67c1djnB_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
68c1ps9A_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
69d1lpfa3



not modelled 100.0 32 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
70d3lada3



not modelled 100.0 32 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
71d1xdia2



not modelled 100.0 18 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
72c2q0lA_



not modelled 100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+
73c3ab1B_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase
74c1f6mF_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: F: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+
75d1v59a3



not modelled 100.0 31 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
76d1dxla3



not modelled 100.0 26 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
77c3d8xB_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1
78d1ojta3



not modelled 100.0 25 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
79c3k30B_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
80d1lvla3



not modelled 100.0 22 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
81c3lzxB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase 2;
PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii)
82d1ebda3



not modelled 100.0 29 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
83d1ojta1



not modelled 100.0 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
84c3h8lA_



not modelled 100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh oxidase;
PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism
85c3d1cA_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing putative monooxygenase;
PDBTitle: crystal structure of flavin-containing putative monooxygenase2 (np_373108.1) from staphylococcus aureus mu50 at 2.40 a resolution
86d3lada1



not modelled 100.0 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
87d1feca1



not modelled 100.0 31 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
88d1lpfa1



not modelled 100.0 26 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
89d1dxla1



not modelled 100.0 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
90c2a87A_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase
91d3grsa3



not modelled 100.0 25 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
92c1lqtB_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:fpra;
PDBTitle: a covalent modification of nadp+ revealed by the atomic resolution2 structure of fpra, a mycobacterium tuberculosis oxidoreductase
93d1gesa3



not modelled 100.0 24 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
94d1mo9a1



not modelled 99.9 31 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
95c1y56A_



not modelled 99.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1363;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
96d1aoga1



not modelled 99.9 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
97d1onfa3



not modelled 99.9 18 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
98d1h6va1



not modelled 99.9 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
99d1aoga3



not modelled 99.9 23 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
100c1cjcA_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (adrenodoxin reductase);
PDBTitle: structure of adrenodoxin reductase of mitochondrial p4502 systems
101d1ebda1



not modelled 99.9 27 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
102d1v59a1



not modelled 99.9 31 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
103d1mo9a3



not modelled 99.9 28 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
104d1feca3



not modelled 99.9 21 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
105d1h6va3



not modelled 99.9 23 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
106d1lvla1



not modelled 99.9 26 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
107d1gv4a1



not modelled 99.9 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
108c1x31A_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
109d1m6ia1



not modelled 99.9 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
110c3s5wB_



not modelled 99.9 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-ornithine 5-monooxygenase;
PDBTitle: ornithine hydroxylase (pvda) from pseudomonas aeruginosa
111d1d4ca2



not modelled 99.9 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
112d1nhpa3



not modelled 99.9 19 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
113d1y0pa2



not modelled 99.9 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
114d2bs2a2



not modelled 99.9 12 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
115d1nhpa1



not modelled 99.9 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
116d1qo8a2



not modelled 99.9 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
117d1q1ra1



not modelled 99.9 29 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
118d2gqfa1



not modelled 99.9 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
119d2iida1



not modelled 99.9 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
120d1ryia1



not modelled 99.9 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0