Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Q	I	D	R	L	L	T	I	M	Q	R	L	R	D	P	E	N	G	C	P	W	D	K	E	Q	T	F	A	T	I	A	P	Y	T	L	E	E	T	Y	E	V	L	D	A	I	A	R	E	D	F	D	D	L	R	G	E	L	G
Secondary structure
SS confidence
Disorder		?	?	?																?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	L	L	F	Q	V	V	F	Y	A	Q	M	A	Q	E	E	G	R	F	D	F	N	D	I	C	A	A	I	S	D	K	L	E	R	R	H	P	H	V	F	A	D	S	S	A	E	N	S	S	E	V	L	A	R	W	E	Q	I	K	T
Secondary structure
SS confidence
Disorder																	?	?																										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	E	R	A	Q	K	A	Q	H	S	A	L	D	D	I	P	R	S	L	P	A	L	M	R	A	Q	K	I	Q	K	R	C	A	N	V	G	F	D	W	T	T	L	G	P	V	V	D	K	V	Y	E	E	I	D	E	V	M	Y	E	A
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?		?																			?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	Q	A	V	V	D	Q	A	K	L	E	E	E	M	G	D	L	L	F	A	T	V	N	L	A	R	H	L	G	T	K	A	E	I	A	L	Q	K	A	N	E	K	F	E	R	R	F	R	E	V	E	R	I	V	A	A	R	G	L	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Sequence		M	T	G	V	D	L	E	T	M	E	E	V	W	Q	Q	V	K	R	Q	E	I	D	L
Secondary structure
SS confidence
Disorder		?			?															?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3crc chain B Region: 11 - 261 Aligned: 218 Modelled: 219 Confidence: 100.0% Identity: 94% PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response Phyre2 PDB 2yxh chain B Region: 4 - 121 Aligned: 114 Modelled: 118 Confidence: 100.0% Identity: 26% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima Phyre2 PDB 2a3q chain A domain 1 Region: 3 - 97 Aligned: 88 Modelled: 95 Confidence: 99.6% Identity: 17% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 3obc chain B Region: 4 - 97 Aligned: 87 Modelled: 93 Confidence: 99.6% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:pyrophosphatase; PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution Phyre2 PDB 2q4p chain A Region: 3 - 97 Aligned: 88 Modelled: 95 Confidence: 99.6% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898 Phyre2 PDB 2gta chain D domain 1 Region: 146 - 227 Aligned: 81 Modelled: 82 Confidence: 99.3% Identity: 25% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 2gta chain A domain 1 Region: 146 - 223 Aligned: 78 Modelled: 78 Confidence: 99.1% Identity: 27% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 1vmg chain A Region: 3 - 87 Aligned: 76 Modelled: 85 Confidence: 99.0% Identity: 20% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 2q9l chain A Region: 143 - 218 Aligned: 76 Modelled: 76 Confidence: 98.9% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) Phyre2 PDB 2oie chain A domain 1 Region: 2 - 86 Aligned: 78 Modelled: 81 Confidence: 98.3% Identity: 17% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: MazG-like Phyre2 PDB 1yxb chain A domain 1 Region: 29 - 88 Aligned: 56 Modelled: 60 Confidence: 97.5% Identity: 25% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 1y6x chain A domain 1 Region: 29 - 88 Aligned: 56 Modelled: 60 Confidence: 97.4% Identity: 25% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 1yvw chain D Region: 29 - 92 Aligned: 60 Modelled: 64 Confidence: 97.0% Identity: 18% PDB header:hydrolase Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13. Phyre2 PDB 1yvw chain A domain 1 Region: 29 - 92 Aligned: 60 Modelled: 64 Confidence: 97.0% Identity: 18% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 2a7w chain F Region: 29 - 90 Aligned: 58 Modelled: 62 Confidence: 96.9% Identity: 24% PDB header:hydrolase Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7 Phyre2 PDB 2a7w chain A domain 1 Region: 29 - 90 Aligned: 58 Modelled: 62 Confidence: 96.9% Identity: 24% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: HisE-like (PRA-PH) Phyre2 PDB 2yf3 chain F Region: 169 - 221 Aligned: 53 Modelled: 53 Confidence: 93.9% Identity: 32% PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese Phyre2 PDB 2p06 chain A Region: 28 - 62 Aligned: 35 Modelled: 35 Confidence: 92.5% Identity: 31% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af_0060; PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304 Phyre2 PDB 2p06 chain A domain 1 Region: 28 - 62 Aligned: 35 Modelled: 35 Confidence: 92.5% Identity: 31% Fold: all-alpha NTP pyrophosphatases Superfamily: all-alpha NTP pyrophosphatases Family: AF0060-like Phyre2 PDB 3nqw chain B Region: 3 - 63 Aligned: 54 Modelled: 61 Confidence: 68.4% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:cg11900; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses Phyre2 1 c3crcB_ 2 c2yxhB_ 3 d2a3qa1 4 c3obcB_ 5 c2q4pA_ 6 d2gtad1 7 d2gtaa1 8 d1vmga_ 9 c2q9lA_ 10 d2oiea1 11 d1yxba1 12 d1y6xa1 13 c1yvwD_ 14 d1yvwa1 15 c2a7wF_ 16 d2a7wa1 17 c2yf3F_ 18 c2p06A_ 19 d2p06a1 20 c3nqwB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3crcB_ 100.0 94 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 2 c2yxhB_ 100.0 26 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mazg-related protein; PDBTitle: crystal structure of mazg-related protein from thermotoga maritima 3 d2a3qa1 99.6 17 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 4 c3obcB_ 99.6 26 PDB header:hydrolase Chain: B: PDB Molecule:pyrophosphatase; PDBTitle: crystal structure of a pyrophosphatase (af1178) from archaeoglobus2 fulgidus at 1.80 a resolution 5 c2q4pA_ 99.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein rs21-c6; PDBTitle: ensemble refinement of the crystal structure of protein from mus2 musculus mm.29898 6 d2gtad1 99.3 25 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 7 d2gtaa1 99.1 27 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 8 d1vmga_ 99.0 20 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 9 c2q9lA_ 98.9 20 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of imazg from vibrio dat 722: ctag-imazg (p43212) 10 d2oiea1 98.3 17 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 11 d1yxba1 97.5 25 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 12 d1y6xa1 97.4 25 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 13 c1yvwD_ 97.0 18 PDB header:hydrolase Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13. 14 d1yvwa1 97.0 18 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 15 c2a7wF_ 96.9 24 PDB header:hydrolase Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase; PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7 16 d2a7wa1 96.9 24 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:HisE-like (PRA-PH) 17 c2yf3F_ 93.9 32 PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese 18 c2p06A_ 92.5 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af_0060; PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304 19 d2p06a1 92.5 31 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:AF0060-like 20 c3nqwB_ 68.4 17 PDB header:hydrolase Chain: B: PDB Molecule:cg11900; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses 21 d2f02a1 not modelled 56.5 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 22 d1zyma1 not modelled 53.1 11 Fold:SAM domain-like Superfamily:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Family:Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 23 c2hroA_ not modelled 47.0 13 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus 24 c3in1A_ not modelled 38.0 17 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 25 c2lfcA_ not modelled 35.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit; PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j 26 c3bf5A_ not modelled 35.2 21 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 27 d2dcna1 not modelled 34.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 28 c2rfpA_ not modelled 31.0 9 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 29 c3ah5E_ not modelled 25.7 23 PDB header:transferase Chain: E: PDB Molecule:thymidylate synthase thyx; PDBTitle: crystal structure of flavin dependent thymidylate synthase thyx from2 helicobacter pylori complexed with fad and dump 30 d2j4ba1 not modelled 24.1 19 Fold:Taf5 N-terminal domain-like Superfamily:Taf5 N-terminal domain-like Family:Taf5 N-terminal domain-like 31 c2jz8A_ not modelled 23.3 80 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55 32 c2varB_ not modelled 22.5 21 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 33 d1bpoa1 not modelled 21.5 60 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin heavy-chain linker domain 34 d1qo8a3 not modelled 19.7 24 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 35 d2afba1 not modelled 19.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 36 d1y0pa3 not modelled 18.8 20 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 37 c3muxB_ not modelled 18.4 21 PDB header:lyase Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase; PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a 38 c2jg5B_ not modelled 18.4 30 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 39 d1vi9a_ not modelled 18.1 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 40 c2nwhA_ not modelled 18.1 17 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 41 d2fv7a1 not modelled 18.0 30 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 42 c3m6yA_ not modelled 17.9 21 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase; PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution. 43 c3gbuD_ not modelled 17.8 30 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 44 c2jg1C_ not modelled 17.7 30 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 45 c3nybA_ not modelled 17.6 14 PDB header:transferase/rna binding protein Chain: A: PDB Molecule:poly(a) rna polymerase protein 2; PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex 46 d2fzpa1 not modelled 17.4 42 Fold:NRDP1 C-terminal domain-like Superfamily:NRDP1 C-terminal domain-like Family:USP8 interacting domain 47 d1d4ca3 not modelled 17.4 20 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 48 d1omha_ not modelled 17.1 29 Fold:Origin of replication-binding domain, RBD-like Superfamily:Origin of replication-binding domain, RBD-like Family:Relaxase domain 49 c2i5bC_ not modelled 16.9 23 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 50 d3bvua1 not modelled 16.7 12 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Families 57/38 glycoside transferase middle domain Family:alpha-mannosidase, domain 2 51 d1ogla_ not modelled 16.6 25 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:Type II deoxyuridine triphosphatase 52 c3fnnA_ not modelled 15.8 26 PDB header:transferase Chain: A: PDB Molecule:thymidylate synthase thyx; PDBTitle: biochemical and structural analysis of an atypical thyx:2 corynebacterium glutamicum nchu 87078 depends on thya for3 thymidine biosynthesis 53 d2f2aa1 not modelled 15.6 19 Fold:Amidase signature (AS) enzymes Superfamily:Amidase signature (AS) enzymes Family:Amidase signature (AS) enzymes 54 c1iclA_ not modelled 15.4 83 PDB header:de novo protein Chain: A: PDB Molecule:th1ox; PDBTitle: solution structure of designed beta-sheet mini-protein th1ox 55 c3hj6B_ not modelled 15.4 15 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 56 c2af6G_ not modelled 15.3 29 PDB header:transferase Chain: G: PDB Molecule:thymidylate synthase thyx; PDBTitle: crystal structure of mycobacterium tuberculosis flavin dependent2 thymidylate synthase (mtb thyx) in the presence of co-factor fad and3 substrate analog 5-bromo-2'-deoxyuridine-5'-monophosphate (brdump) 57 d1vm7a_ not modelled 15.2 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 58 d2ibge1 not modelled 15.0 33 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:Hedgehog (development protein), N-terminal signaling domain 59 d1yvia1 not modelled 14.7 2 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Phosphorelay protein-like 60 d2abqa1 not modelled 14.5 30 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 61 c2rbcA_ not modelled 14.4 22 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 62 c2ddmA_ not modelled 14.2 23 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 63 c2ld7B_ not modelled 14.1 13 PDB header:transcription Chain: B: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of the msin3a pah3-sap30 sid complex 64 c2z36A_ not modelled 13.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome p450 type compactin 3'',4''- PDBTitle: crystal structure of cytochrome p450 moxa from nonomuraea2 recticatena (cyp105) 65 c3cqdB_ not modelled 13.9 15 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 66 c3egrB_ not modelled 13.9 38 PDB header:oxidoreductase Chain: B: PDB Molecule:phenylacetate-coa oxygenase subunit paab; PDBTitle: crystal structure of a phenylacetate-coa oxygenase subunit paab2 (reut_a2307) from ralstonia eutropha jmp134 at 2.65 a resolution 67 c1bpoA_ not modelled 13.8 60 PDB header:membrane protein Chain: A: PDB Molecule:protein (clathrin); PDBTitle: clathrin heavy-chain terminal domain and linker 68 c3pl2D_ not modelled 13.6 14 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 69 d3d1ma1 not modelled 13.6 33 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:Hedgehog (development protein), N-terminal signaling domain 70 d1wn0a1 not modelled 13.6 5 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Phosphorelay protein-like 71 c3nnqA_ not modelled 13.2 21 PDB header:viral protein Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3 72 c2c49A_ not modelled 13.0 22 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 73 d1ffgb_ not modelled 12.9 38 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 74 c2pmzL_ not modelled 12.7 18 PDB header:translation, transferase Chain: L: PDB Molecule:dna-directed rna polymerase subunit l; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 75 c3skqA_ not modelled 12.7 6 PDB header:metal transport Chain: A: PDB Molecule:mitochondrial distribution and morphology protein 38; PDBTitle: mdm38 is a 14-3-3-like receptor and associates with the protein2 synthesis machinery at the inner mitochondrial membrane 76 c1w7pD_ not modelled 12.6 32 PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) 77 c1a0oH_ not modelled 12.5 38 PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey 78 c3lh5A_ not modelled 12.5 25 PDB header:protein binding Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of the sh3-guanylate kinase core domain of zo-1 79 d2ix0a4 not modelled 12.4 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 80 c3ebnD_ not modelled 12.3 24 PDB header:hydrolase Chain: D: PDB Molecule:replicase polyprotein 1ab; PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping 81 c3m1nB_ not modelled 12.1 33 PDB header:signaling protein Chain: B: PDB Molecule:sonic hedgehog protein; PDBTitle: crystal structure of human sonic hedgehog n-terminal domain 82 c3e3vA_ not modelled 11.9 11 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 83 d1rkda_ not modelled 11.9 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 84 c3qk9B_ not modelled 11.9 20 PDB header:protein transport Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3 85 c3kxaD_ not modelled 11.4 31 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae 86 c3ibqA_ not modelled 11.2 30 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 87 c3fymA_ not modelled 11.2 11 PDB header:dna binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus 88 d2absa1 not modelled 11.1 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 89 c2absA_ not modelled 11.1 19 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 90 c3kzhA_ not modelled 11.1 19 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 91 c3l9qB_ not modelled 10.9 13 PDB header:transferase Chain: B: PDB Molecule:dna primase large subunit; PDBTitle: crystal structure of human polymerase alpha-primase p58 iron-sulfur2 cluster domain 92 d1v19a_ not modelled 10.8 30 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 93 c3lhxA_ not modelled 10.8 30 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 94 d1in0a1 not modelled 10.8 15 Fold:Ferredoxin-like Superfamily:YajQ-like Family:YajQ-like 95 c2dydA_ not modelled 10.8 18 PDB header:rna binding protein Chain: A: PDB Molecule:poly(a)-binding protein; PDBTitle: solution structure of the pabc domain from triticum2 aevestium poly(a)-binding protein 96 d1bxya_ not modelled 10.8 24 Fold:Ribosomal protein L30p/L7e Superfamily:Ribosomal protein L30p/L7e Family:Ribosomal protein L30p/L7e 97 d1sr2a_ not modelled 10.5 5 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Sensor-like histidine kinase YojN, C-terminal domain 98 d1e85a_ not modelled 10.5 23 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 99 c2pkkA_ not modelled 10.5 18 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0