Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9I8
DateThu Jan 5 11:10:25 GMT 2012
Unique Job ID81884ad6d88fea04

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2jo6a1
Top template information
Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
Confidence and coverage
Confidence:100.0% Coverage:100%
108 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIA
Secondary structure 
SS confidence 
Disorder  ????
Disorder confidence 
 
   .........70.........80.........90.........100........
Sequence  EHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRG
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2jo6 chain A domain 1

3D model

Region: 1 - 108
Aligned: 108
Modelled: 108
Confidence: 100.0%
Identity: 100%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2

PDB 2jza chain A domain 1

3D model

Region: 1 - 107
Aligned: 107
Modelled: 107
Confidence: 100.0%
Identity: 63%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2

PDB 3c0d chain A domain 1

3D model

Region: 1 - 107
Aligned: 105
Modelled: 107
Confidence: 100.0%
Identity: 36%
Fold: ISP domain
Superfamily: ISP domain
Family: NirD-like

Phyre2

PDB 2qpz chain A

3D model

Region: 1 - 107
Aligned: 99
Modelled: 105
Confidence: 100.0%
Identity: 18%
PDB header:metal binding protein
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin
PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin

Phyre2

PDB 1fqt chain A

3D model

Region: 1 - 107
Aligned: 100
Modelled: 105
Confidence: 100.0%
Identity: 21%
Fold: ISP domain
Superfamily: ISP domain
Family: Rieske iron-sulfur protein (ISP)

Phyre2

PDB 3gce chain A

3D model

Region: 2 - 107
Aligned: 101
Modelled: 106
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a-
PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177

Phyre2

PDB 3d89 chain A

3D model

Region: 2 - 107
Aligned: 103
Modelled: 104
Confidence: 99.9%
Identity: 18%
PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus

Phyre2

PDB 1z01 chain A domain 1

3D model

Region: 3 - 106
Aligned: 99
Modelled: 104
Confidence: 99.9%
Identity: 13%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 1vm9 chain A

3D model

Region: 4 - 107
Aligned: 98
Modelled: 104
Confidence: 99.9%
Identity: 20%
Fold: ISP domain
Superfamily: ISP domain
Family: Rieske iron-sulfur protein (ISP)

Phyre2

PDB 2de7 chain E

3D model

Region: 3 - 108
Aligned: 100
Modelled: 106
Confidence: 99.9%
Identity: 20%
PDB header:oxidoreductase
Chain: E: PDB Molecule:ferredoxin component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase

Phyre2

PDB 2de6 chain A domain 1

3D model

Region: 3 - 106
Aligned: 99
Modelled: 104
Confidence: 99.9%
Identity: 13%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 2i7f chain B

3D model

Region: 3 - 107
Aligned: 99
Modelled: 105
Confidence: 99.9%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin component of dioxygenase;
PDBTitle: sphingomonas yanoikuyae b1 ferredoxin

Phyre2

PDB 2zyl chain A

3D model

Region: 3 - 106
Aligned: 97
Modelled: 104
Confidence: 99.9%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis

Phyre2

PDB 3gkq chain B

3D model

Region: 3 - 106
Aligned: 99
Modelled: 104
Confidence: 99.9%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1

Phyre2

PDB 2de7 chain B

3D model

Region: 4 - 106
Aligned: 98
Modelled: 103
Confidence: 99.9%
Identity: 15%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase

Phyre2

PDB 1z01 chain D

3D model

Region: 4 - 106
Aligned: 98
Modelled: 103
Confidence: 99.9%
Identity: 14%
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction

Phyre2

PDB 3dqy chain A

3D model

Region: 3 - 107
Aligned: 97
Modelled: 103
Confidence: 99.9%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin
PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin

Phyre2

PDB 3gcf chain C

3D model

Region: 4 - 106
Aligned: 98
Modelled: 103
Confidence: 99.9%
Identity: 19%
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177

Phyre2

PDB 3gte chain B

3D model

Region: 3 - 106
Aligned: 96
Modelled: 104
Confidence: 99.9%
Identity: 20%
PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron

Phyre2

PDB 3n0q chain A

3D model

Region: 1 - 106
Aligned: 100
Modelled: 106
Confidence: 99.9%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution

Phyre2
1
d2jo6a1
2
d2jzaa1
3
d3c0da1
4
c2qpzA_
5
d1fqta_
6
c3gceA_
7
c3d89A_
8
d1z01a1
9
d1vm9a_
10
c2de7E_
11
d2de6a1
12
c2i7fB_
13
c2zylA_
14
c3gkqB_
15
c2de7B_
16
c1z01D_
17
c3dqyA_
18
c3gcfC_
19
c3gteB_
20
c3n0qA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
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78
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81
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96



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2jo6a1
100.0 100 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
2d2jzaa1
100.0 63 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
3d3c0da1
100.0 36 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
4c2qpzA_
100.0 18 PDB header:metal binding protein
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin
PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin
5d1fqta_
100.0 21 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
6c3gceA_
100.0 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a-
PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177
7c3d89A_
99.9 18 PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus
8d1z01a1
99.9 13 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
9d1vm9a_
99.9 20 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
10c2de7E_
99.9 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:ferredoxin component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
11d2de6a1
99.9 13 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
12c2i7fB_
99.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin component of dioxygenase;
PDBTitle: sphingomonas yanoikuyae b1 ferredoxin
13c2zylA_
99.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis
14c3gkqB_
99.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1
15c2de7B_
99.9 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
16c1z01D_
99.9 14 PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction
17c3dqyA_
99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin
PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin
18c3gcfC_
99.9 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
19c3gteB_
99.9 20 PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron
20c3n0qA_
99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
21d1ulia1
not modelled 99.9 12 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
22d1wqla1
not modelled 99.9 11 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
23d1o7na1
not modelled 99.9 19 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
24d2bmoa1
not modelled 99.9 21 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
25c1uljA_
not modelled 99.9 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:biphenyl dioxygenase large subunit;
PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate
26c1wqlA_
not modelled 99.9 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase;
PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
27d2b1xa1
not modelled 99.9 11 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
28c2hmnA_
not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit;
PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.
29c2b1xE_
not modelled 99.9 12 PDB header:oxidoreductase
Chain: E: PDB Molecule:naphthalene dioxygenase large subunit;
PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
30c2gbxE_
not modelled 99.9 12 PDB header:oxidoreductase
Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
31d1g8kb_
not modelled 99.8 10 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
32d1rfsa_
not modelled 99.8 13 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
33d3cx5e1
not modelled 99.8 13 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
34d1q90c_
not modelled 99.8 11 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
35d1nyka_
not modelled 99.7 20 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
36d2e74d1
not modelled 99.7 14 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
37c2e76D_
not modelled 99.7 15 PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
38d1riea_
not modelled 99.6 10 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
39c1p84E_
not modelled 99.6 11 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
40c2fyuE_
not modelled 99.5 10 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
41c2fynO_
not modelled 99.5 16 PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
42c2nvgA_
not modelled 99.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: soluble domain of rieske iron sulfur protein.
43d1jm1a_
not modelled 99.3 16 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
44d2hf1a1
not modelled 58.6 19 Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
45d2jnya1
not modelled 56.6 22 Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
46d2pk7a1
not modelled 52.9 19 Fold:Trm112p-like
Superfamily:Trm112p-like
Family:Trm112p-like
47c2jr6A_
not modelled 49.4 28 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein nma0874;
PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32
48c2kpiA_
not modelled 47.9 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein sco3027;
PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58
49c2js4A_
not modelled 45.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
50c3lasA_
not modelled 31.5 8 PDB header:lyase
Chain: A: PDB Molecule:putative carbonic anhydrase;
PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution
51c2w3nA_
not modelled 27.5 25 PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase 2;
PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans
52c1ylkA_
not modelled 27.4 17 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322;
PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate
53d1ddza1
not modelled 26.9 17 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
54c2kppA_
not modelled 26.3 3 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
55c2a8cE_
not modelled 26.2 17 PDB header:lyase
Chain: E: PDB Molecule:carbonic anhydrase 2;
PDBTitle: haemophilus influenzae beta-carbonic anhydrase
56d1ddza2
not modelled 26.2 17 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
57c1ddzA_
not modelled 26.2 17 PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase;
PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1
58c3eyxB_
not modelled 25.2 25 PDB header:lyase
Chain: B: PDB Molecule:carbonic anhydrase;
PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae
59d1g5ca_
not modelled 22.0 8 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
60d2aqaa1
not modelled 22.0 17 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
61c3ucoB_
not modelled 21.6 18 PDB header:lyase/lyase inhibitor
Chain: B: PDB Molecule:carbonic anhydrase;
PDBTitle: coccomyxa beta-carbonic anhydrase in complex with iodide
62c2a5vB_
not modelled 21.6 25 PDB header:lyase
Chain: B: PDB Molecule:carbonic anhydrase (carbonate dehydratase) (carbonic
PDBTitle: crystal structure of m. tuberculosis beta carbonic anhydrase, rv3588c,2 tetrameric form
63d1i6pa_
not modelled 21.5 27 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
64d1ekja_
not modelled 21.2 17 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
65d1t1ua1
not modelled 17.9 15 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
66c1t7qA_
not modelled 13.5 18 PDB header:transferase
Chain: A: PDB Molecule:carnitine acetyltransferase;
PDBTitle: crystal structure of the f565a mutant of murine carnitine2 acetyltransferase in complex with carnitine and coa
67c2h4tB_
not modelled 12.3 13 PDB header:transferase
Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii,
PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii
68d1xl7a1
not modelled 12.2 13 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
69c2j6aA_
not modelled 11.7 11 PDB header:transferase
Chain: A: PDB Molecule:protein trm112;
PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex.
70c1q6xA_
not modelled 11.7 15 PDB header:transferase
Chain: A: PDB Molecule:choline o-acetyltransferase;
PDBTitle: crystal structure of rat choline acetyltransferase
71d1ubdc1
not modelled 11.4 18 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
72d1ndba1
not modelled 11.3 15 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
73d2j7ja2
not modelled 10.5 17 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
74c2jyeA_
not modelled 10.4 16 PDB header:cytokine
Chain: A: PDB Molecule:granulin a;
PDBTitle: human granulin a
75d2apob1
not modelled 9.9 29 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
76d1nm8a1
not modelled 9.5 18 Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
77d2bdra1
not modelled 9.3 9 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Ureidoglycolate hydrolase AllA
78c2fyoA_
not modelled 9.1 10 PDB header:transferase
Chain: A: PDB Molecule:carnitine o-palmitoyltransferase ii,
PDBTitle: crystal structure of rat carnitine palmitoyltransferase 22 in space group p43212
79d2nn6g3
not modelled 8.9 13 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
80d2c42a2
not modelled 8.8 8 Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:PFOR PP module
81c2fy2A_
not modelled 8.8 15 PDB header:transferase
Chain: A: PDB Molecule:choline o-acetyltransferase;
PDBTitle: structures of ligand bound human choline acetyltransferase2 provide insight into regulation of acetylcholine synthesis
82d2ey4e1
not modelled 8.7 21 Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
83c3izbP_
not modelled 8.1 20 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
84c2k5rA_
not modelled 7.9 32 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein xf2673;
PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39
85c3iz6P_
not modelled 7.8 20 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
86d1l1oc_
not modelled 7.6 9 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
87c2xznQ_
not modelled 6.7 20 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
88d1xsqa_
not modelled 6.3 17 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Ureidoglycolate hydrolase AllA
89d2ct7a1
not modelled 6.2 15 Fold:RING/U-box
Superfamily:RING/U-box
Family:IBR domain
90c2aklA_
not modelled 6.1 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
91d1hyoa1
not modelled 5.9 13 Fold:SH3-like barrel
Superfamily:Fumarylacetoacetate hydrolase, FAH, N-terminal domain
Family:Fumarylacetoacetate hydrolase, FAH, N-terminal domain
92c2c3yA_
not modelled 5.8 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
93d2ja9a2
not modelled 5.7 13 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
94c1skzA_
not modelled 5.5 9 PDB header:serine protease inhibitor
Chain: A: PDB Molecule:antistasin;
PDBTitle: protease inhibitor
95d1mdah_
not modelled 5.3 14 Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
96d1gpca_
not modelled 5.2 27 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Phage ssDNA-binding proteins

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0