Email l.a.kelley@imperial.ac.uk Description P16918 Date Wed Jan 25 15:20:40 GMT 2012 Unique Job ID 7f4c835c4cb93054

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2oy7A_ 96.0 15 PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant 2 c1n7dA_ 58.3 13 PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor 3 d1adta1 45.4 34 Fold:Domain of early E2A DNA-binding protein, ADDBP Superfamily:Domain of early E2A DNA-binding protein, ADDBP Family:Domain of early E2A DNA-binding protein, ADDBP 4 d1x3za1 44.1 22 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 5 c3ib5A_ 41.3 18 PDB header:hormone Chain: A: PDB Molecule:sex pheromone precursor; PDBTitle: crystal structure of sex pheromone precursor (yp_536235.1)2 from lactobacillus salivarius subsp. salivarius ucc118 at3 1.35 a resolution 6 c2ivzD_ 37.7 13 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 7 c3e5zA_ 26.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 8 c3mswA_ 25.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution 9 c2w8bB_ 25.0 13 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 10 c3eswA_ 24.9 21 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 11 c3rwxA_ 24.6 21 PDB header:transport protein Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein; PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution 12 d2f4ma1 24.5 24 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 13 c1j5qB_ 22.5 26 PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus. 14 d1ospo_ 22.1 17 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 15 c2x12A_ 21.7 27 PDB header:cell adhesion Chain: A: PDB Molecule:fimbriae-associated protein fap1; PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae 16 c3cbbA_ 19.7 18 PDB header:transcription/dna Chain: A: PDB Molecule:hepatocyte nuclear factor 4-alpha, dna binding PDBTitle: crystal structure of hepatocyte nuclear factor 4alpha in2 complex with dna: diabetes gene product 17 c3vh0C_ 19.0 9 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 18 d1hraa_ 17.4 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 19 c2cokA_ 16.2 3 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1 20 c1gibA_ 15.9 100 PDB header:neurotoxin Chain: A: PDB Molecule:mu-conotoxin giiib; PDBTitle: mu-conotoxin giiib, nmr 21 d1ss3a_ not modelled 15.8 25 Fold:Toxic hairpin Superfamily:Pollen allergen ole e 6 Family:Pollen allergen ole e 6 22 c2vsaA_ not modelled 15.8 21 PDB header:toxin Chain: A: PDB Molecule:mosquitocidal toxin; PDBTitle: structure and mode of action of a mosquitocidal holotoxin 23 c2z48B_ not modelled 15.4 20 PDB header:toxin Chain: B: PDB Molecule:hemolytic lectin cel-iii; PDBTitle: crystal structure of hemolytic lectin cel-iii complexed2 with galnac 24 d1bcoa1 not modelled 15.0 17 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 25 c3ebqA_ not modelled 14.9 29 PDB header:hydrolase Chain: A: PDB Molecule:molecule: pppde1 (permuted papain fold PDBTitle: crystal structure of human pppde1 26 d1ei5a1 not modelled 14.9 32 Fold:Streptavidin-like Superfamily:D-aminopeptidase, middle and C-terminal domains Family:D-aminopeptidase, middle and C-terminal domains 27 c2envA_ not modelled 14.1 18 PDB header:transcription Chain: A: PDB Molecule:peroxisome proliferator-activated receptor delta; PDBTitle: solution sturcture of the c4-type zinc finger domain from2 human peroxisome proliferator-activated receptor delta 28 c3bl9B_ not modelled 14.1 17 PDB header:hydrolase Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps; PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493 29 d1r0oa_ not modelled 13.8 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 30 c3u4zB_ not modelled 13.8 32 PDB header:dna binding protein Chain: B: PDB Molecule:telomerase-associated protein 82; PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-b 31 d1hcqa_ not modelled 13.5 8 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 32 c2hwnF_ not modelled 13.5 25 PDB header:transferase Chain: F: PDB Molecule:a kinase binding peptide; PDBTitle: crystal structure of rii alpha dimerization/docking domain of pka2 bound to the d-akap2 peptide 33 d2fs2a1 not modelled 13.5 15 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:PaaI/YdiI-like 34 c1r4iA_ not modelled 13.4 9 PDB header:transcription/dna Chain: A: PDB Molecule:androgen receptor; PDBTitle: crystal structure of androgen receptor dna-binding domain2 bound to a direct repeat response element 35 d1r4ia_ not modelled 13.4 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 36 c3bmxB_ not modelled 13.4 42 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis 37 d1r4ra_ not modelled 13.3 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 38 d1o5ua_ not modelled 13.2 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 39 c3cjhK_ not modelled 13.2 50 PDB header:protein transport Chain: K: PDB Molecule:mitochondrial import inner membrane translocase subunit PDBTitle: tim8-tim13 complex 40 d1lata_ not modelled 13.1 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 41 c2eblA_ not modelled 13.1 27 PDB header:transcription Chain: A: PDB Molecule:coup transcription factor 1; PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1 42 c3jroA_ not modelled 13.1 11 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 43 c3swnA_ not modelled 13.0 13 PDB header:rna binding protein Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm5; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 44 d1r0na_ not modelled 13.0 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 45 d2hanb1 not modelled 13.0 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 46 d1pk6c_ not modelled 12.9 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 47 d1glua_ not modelled 12.8 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 48 c3dzuD_ not modelled 12.8 18 PDB header:transcription/dna Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide 49 c2dg2D_ not modelled 12.8 21 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 50 c3swnC_ not modelled 12.8 13 PDB header:rna binding protein Chain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings 51 d1dszb_ not modelled 12.6 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 52 d1dsza_ not modelled 12.5 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 53 c2bskD_ not modelled 12.5 29 PDB header:protein transport Chain: D: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: crystal structure of the tim9 tim10 hexameric complex 54 c2ka3C_ not modelled 12.5 36 PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain 55 c2w2sA_ not modelled 12.2 46 PDB header:viral protein Chain: A: PDB Molecule:matrix protein; PDBTitle: structure of the lagos bat virus matrix protein 56 d1brwa3 not modelled 12.1 23 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 57 d1lo1a_ not modelled 11.9 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 58 d1ynwa1 not modelled 11.8 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 59 d1bcga_ not modelled 11.7 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Long-chain scorpion toxins 60 d1kb6b_ not modelled 11.7 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 61 c1xmlA_ not modelled 11.6 17 PDB header:chaperone Chain: A: PDB Molecule:heat shock-like protein 1; PDBTitle: structure of human dcps 62 d1pk6b_ not modelled 11.6 27 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 63 c1t3dB_ not modelled 11.5 32 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 64 d1a6ya_ not modelled 11.4 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 65 d2tpta3 not modelled 11.3 23 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 66 c2kx7A_ not modelled 11.3 28 PDB header:protein binding Chain: A: PDB Molecule:sensor-like histidine kinase yojn; PDBTitle: solution structure of the e.coli rcsd-abl domain (residues 688-795) 67 d1pvza_ not modelled 11.2 44 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 68 c3nzpA_ not modelled 11.1 22 PDB header:lyase Chain: A: PDB Molecule:arginine decarboxylase; PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53 69 c3bp1A_ not modelled 11.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase; PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine2 reductase quef from vibrio cholerae o1 biovar eltor 70 c3dxrB_ not modelled 11.0 29 PDB header:protein transport Chain: B: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: crystal structure of the yeast inter-membrane space2 chaperone assembly tim9.10 71 d2bskb1 not modelled 11.0 29 Fold:Tim10-like Superfamily:Tim10-like Family:Tim10/DDP 72 d2nllb_ not modelled 11.0 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 73 d1m3ya2 not modelled 11.0 33 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54 74 c2a66A_ not modelled 10.9 27 PDB header:transcription/dna Chain: A: PDB Molecule:orphan nuclear receptor nr5a2; PDBTitle: human liver receptor homologue dna-binding domain (hlrh-12 dbd) in complex with dsdna from the hcyp7a1 promoter 75 d2bska1 not modelled 10.9 25 Fold:Tim10-like Superfamily:Tim10-like Family:Tim10/DDP 76 c2g9tT_ not modelled 10.9 29 PDB header:viral protein Chain: T: PDB Molecule: PDBTitle: crystal structure of the sars coronavirus nsp10 at 2.1a 77 d1jofa_ not modelled 10.8 13 Fold:7-bladed beta-propeller Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme Family:3-carboxy-cis,cis-mucoante lactonizing enzyme 78 c3dxrA_ not modelled 10.7 25 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial import inner membrane translocase PDBTitle: crystal structure of the yeast inter-membrane space2 chaperone assembly tim9.10 79 c2hnbA_ not modelled 10.7 10 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 80 d1xata_ not modelled 10.5 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 81 c1r0nB_ not modelled 10.5 18 PDB header:transcription/dna Chain: B: PDB Molecule:ecdysone receptor; PDBTitle: crystal structure of heterodimeric ecdsyone receptor dna2 binding complex 82 c1z7eC_ not modelled 10.4 20 PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna 83 d1c3ha_ not modelled 10.3 31 Fold:TNF-like Superfamily:TNF-like Family:TNF-like 84 d2hana1 not modelled 10.3 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 85 d1jnpa_ not modelled 10.2 26 Fold:Oncogene products Superfamily:Oncogene products Family:Oncogene products 86 c3cjhJ_ not modelled 10.2 38 PDB header:protein transport Chain: J: PDB Molecule:mitochondrial import inner membrane translocase subunit PDBTitle: tim8-tim13 complex 87 d1f1sa3 not modelled 10.1 18 Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain 88 d2nlla_ not modelled 10.1 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 89 c3dzyA_ not modelled 10.1 27 PDB header:transcription/dna Chain: A: PDB Molecule:retinoic acid receptor rxr-alpha; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with rosiglitazone, 9-cis retinoic acid and ncoa2 peptide 90 d1cita_ not modelled 10.0 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 91 c2khbA_ not modelled 9.9 30 PDB header:antimicrobial protein Chain: A: PDB Molecule:kalata-b1; PDBTitle: solution structure of linear kalata b1 (loop 6) 92 c1m4xC_ not modelled 9.9 33 PDB header:virus Chain: C: PDB Molecule:pbcv-1 virus capsid; PDBTitle: pbcv-1 virus capsid, quasi-atomic model 93 c3cw1Z_ not modelled 9.9 15 PDB header:splicing Chain: Z: PDB Molecule:small nuclear ribonucleoprotein f; PDBTitle: crystal structure of human spliceosomal u1 snrnp 94 d1w9pa2 not modelled 9.8 18 Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain 95 d1t3da_ not modelled 9.7 32 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 96 c2e2wA_ not modelled 9.7 16 PDB header:ligase Chain: A: PDB Molecule:dna ligase 4; PDBTitle: solution structure of the first brct domain of human dna2 ligase iv 97 d2oqea2 not modelled 9.7 25 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 98 c3fybA_ not modelled 9.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis 99 c1i84V_ not modelled 9.6 18 PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment.