Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	S	T	Q	F	N	R	D	N	Q	Y	Q	A	I	T	K	P	S	L	L	A	G	C	I	A	L	A	L	L	P	S	A	A	F	A	A	P	A	T	E	E	T	V	I	V	E	G	S	A	T	A	P	D	D	G	E	N	D	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?													?	?	?	?	?	?	?	?	?	?	?	?							?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	V	T	S	T	S	A	G	T	K	M	Q	M	T	Q	R	D	I	P	Q	S	V	T	I	V	S	Q	Q	R	M	E	D	Q	Q	L	Q	T	L	G	E	V	M	E	N	T	L	G	I	S	K	S	Q	A	D	S	D	R	A	L	Y
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?	?																							?																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	S	R	G	F	Q	I	D	N	Y	M	V	D	G	I	P	T	Y	F	E	S	R	W	N	L	G	D	A	L	S	D	M	A	L	F	E	R	V	E	V	V	R	G	A	T	G	L	M	T	G	T	G	N	P	S	A	A	I	N	M
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?	?	?	?	?																			?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	R	K	H	A	T	S	R	E	F	K	G	D	V	S	A	E	Y	G	S	W	N	K	E	R	Y	V	A	D	L	Q	S	P	L	T	E	D	G	K	I	R	A	R	I	V	G	G	Y	Q	N	N	D	S	W	L	D	R	Y	N	S
Secondary structure
SS confidence
Disorder										?																																											?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	K	T	F	F	S	G	I	V	D	A	D	L	G	D	L	T	T	L	S	A	G	Y	E	Y	Q	R	I	D	V	N	S	P	T	W	G	G	L	P	R	W	N	T	D	G	S	S	N	S	Y	D	R	A	R	S	T	A	P	D	W
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	Y	N	D	K	E	I	N	K	V	F	M	T	L	K	Q	Q	F	A	D	T	W	Q	A	T	L	N	A	T	H	S	E	V	E	F	D	S	K	M	M	Y	V	D	A	Y	V	N	K	A	D	G	M	L	V	G	P	Y	S	N	Y
Secondary structure
SS confidence
Disorder																																				?	?	?	?				?	?				?	?	?	?	?	?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	P	G	F	D	Y	V	G	G	T	G	W	N	S	G	K	R	K	V	D	A	L	D	L	F	A	D	G	S	Y	E	L	F	G	R	Q	H	N	L	M	F	G	G	S	Y	S	K	Q	N	N	R	Y	F	S	S	W	A	N	I	F
Secondary structure
SS confidence
Disorder		?		?	?							?	?	?	?	?	?																																			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		P	D	E	I	G	S	F	Y	N	F	N	G	N	F	P	Q	T	D	W	S	P	Q	S	L	A	Q	D	D	T	T	H	M	K	S	L	Y	A	A	T	R	V	T	L	A	D	P	L	H	L	I	L	G	A	R	Y	T	N	W	R	V
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		D	T	L	T	Y	S	M	E	K	N	H	T	T	P	Y	A	G	L	V	F	D	I	N	D	N	W	S	T	Y	A	S	Y	T	S	I	F	Q	P	Q	N	D	R	D	S	S	G	K	Y	L	A	P	I	T	G	N	N	Y	E	L	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																														?	?	?	?	?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		L	K	S	D	W	M	N	S	R	L	T	T	T	L	A	I	F	R	I	E	Q	D	N	V	A	Q	S	T	G	T	P	I	P	G	S	N	G	E	T	A	Y	K	A	V	D	G	T	V	S	K	G	V	E	F	E	L	N	G	A	I
Secondary structure
SS confidence
Disorder																															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Sequence		T	D	N	W	Q	L	T	F	G	A	T	R	Y	I	A	E	D	N	E	G	N	A	V	N	P	N	L	P	R	T	T	V	K	M	F	T	S	Y	R	L	P	V	M	P	E	L	T	V	G	G	G	V	N	W	Q	N	R	V	Y	T
Secondary structure
SS confidence
Disorder																			?				?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Sequence		D	T	V	T	P	Y	G	T	F	R	A	E	Q	G	S	Y	A	L	V	D	L	F	T	R	Y	Q	V	T	K	N	F	S	L	Q	G	N	V	N	N	L	F	D	K	T	Y	D	T	N	V	E	G	S	I	V	Y	G	T	P	R	N
Secondary structure
SS confidence
Disorder			?	?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		F	S	I	T	G	T	Y	Q	F
Secondary structure
SS confidence
Disorder										?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2iah chain A Region: 24 - 729 Aligned: 692 Modelled: 706 Confidence: 100.0% Identity: 31% PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. Phyre2 PDB 1xkh chain C Region: 42 - 729 Aligned: 676 Modelled: 664 Confidence: 100.0% Identity: 31% PDB header:membrane protein Chain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine Phyre2 PDB 3qlb chain A Region: 50 - 729 Aligned: 649 Modelled: 665 Confidence: 100.0% Identity: 19% PDB header:metal transport Chain: A: PDB Molecule:enantio-pyochelin receptor; PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin Phyre2 PDB 2grx chain B Region: 51 - 729 Aligned: 664 Modelled: 664 Confidence: 100.0% Identity: 18% PDB header:metal transport Chain: B: PDB Molecule:ferrichrome-iron receptor; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome Phyre2 PDB 1by5 chain A Region: 50 - 729 Aligned: 664 Modelled: 680 Confidence: 100.0% Identity: 19% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 PDB 1xkw chain A Region: 55 - 729 Aligned: 644 Modelled: 662 Confidence: 100.0% Identity: 27% PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa Phyre2 PDB 3efm chain A Region: 49 - 711 Aligned: 565 Modelled: 585 Confidence: 100.0% Identity: 38% PDB header:membrane protein Chain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis Phyre2 PDB 3fhh chain A Region: 62 - 729 Aligned: 589 Modelled: 607 Confidence: 100.0% Identity: 17% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae Phyre2 PDB 1kmo chain A Region: 63 - 729 Aligned: 622 Modelled: 632 Confidence: 100.0% Identity: 16% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 PDB 2hdi chain A Region: 62 - 729 Aligned: 560 Modelled: 568 Confidence: 100.0% Identity: 18% PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia. Phyre2 PDB 2guf chain A domain 1 Region: 62 - 729 Aligned: 539 Modelled: 574 Confidence: 100.0% Identity: 15% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 PDB 1po3 chain A Region: 73 - 729 Aligned: 612 Modelled: 622 Confidence: 100.0% Identity: 15% PDB header:membrane protein Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate Phyre2 PDB 3csl chain B Region: 72 - 729 Aligned: 637 Modelled: 637 Confidence: 100.0% Identity: 17% PDB header:membrane protein/heme binding protein Chain: B: PDB Molecule:hasr protein; PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme Phyre2 PDB 1fep chain A Region: 62 - 729 Aligned: 626 Modelled: 626 Confidence: 100.0% Identity: 15% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Ligand-gated protein channel Phyre2 PDB 1t16 chain A Region: 453 - 729 Aligned: 271 Modelled: 277 Confidence: 99.4% Identity: 12% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Outer membrane protein transport protein Phyre2 PDB 3dwo chain X Region: 436 - 688 Aligned: 249 Modelled: 253 Confidence: 99.2% Identity: 16% PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue Phyre2 PDB 2k0l chain A Region: 591 - 729 Aligned: 136 Modelled: 139 Confidence: 97.6% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Phyre2 PDB 3brz chain A Region: 446 - 687 Aligned: 227 Modelled: 242 Confidence: 97.4% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Phyre2 PDB 3qra chain A Region: 590 - 729 Aligned: 125 Modelled: 140 Confidence: 97.3% Identity: 11% PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis Phyre2 PDB 1g90 chain A Region: 590 - 729 Aligned: 136 Modelled: 140 Confidence: 97.1% Identity: 12% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 1 c2iahA_ 2 c1xkhC_ 3 c3qlbA_ 4 c2grxB_ 5 d1by5a_ 6 c1xkwA_ 7 c3efmA_ 8 c3fhhA_ 9 d1kmoa_ 10 c2hdiA_ 11 d2gufa1 12 c1po3A_ 13 c3cslB_ 14 d1fepa_ 15 d1t16a_ 16 c3dwoX_ 17 c2k0lA_ 18 c3brzA_ 19 c3qraA_ 20 d1g90a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53