Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	L	K	K	L	M	E	H	I	S	I	I	P	D	Y	R	Q	T	W	K	V	E	H	K	L	S	D	I	L	L	L	T	I	C	A	V	I	S	G	A	E	G	W	E	D	I	E	D	F	G	E	T	H	L	D	F	L	K	Q
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	G	D	F	E	N	G	I	P	V	H	D	T	I	A	R	V	V	S	C	I	S	P	A	K	F	H	E	C	F	I	N	W	M	R	D	C	H	S	S	D	D	K	D	V	I	A	I	D	G	K	T	L	R	H	S	Y	D	K	S
Secondary structure
SS confidence
Disorder																																									?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	R	R	G	A	I	H	V	I	S	A	F	S	T	M	H	S	L	V	I	G	Q	I	K	T	D	E	K	S	N	E	I	T	A	I	P	E	L	L	N	M	L	D	I	K	G	K	I	I	T	T	D	A	M	G	C	Q	K	D	I
Secondary structure
SS confidence
Disorder		?	?																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	E	K	I	Q	K	Q	G	G	D	Y	L	F	A	V	K	G	T	Q	G	R	L	N	K	A	F	E	E	K	F	P	L	K	E	L	N	N	P	E	H	D	S	Y	A	I	S	E	K	S	H	G	R	E	E	I	R	L	H	I	V
Secondary structure
SS confidence
Disorder																																															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		C	D	V	P	D	E	L	I	D	F	T	F	E	W	K	G	L	K	K	L	C	V	A	V	S	F	R	S	I	I	A	E	Q	K	K	E	P	E	M	T	V	R	Y	Y	I	S	S	A	D	L	T	A	E	K	F	A	T	A	I	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	H	W	H	V	E	N	K	L	H	W	R	L	D	V	V	M	N	E	D	D	C	K	I	R	R	G	N	A	A	E	L	F	S	G	I	R	H	I	A	I	N	I	L	T	N	D	K	V	F	K	A	G	L	R	R	K	M	R	K
Secondary structure
SS confidence
Disorder								?																		?																					?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Sequence		A	A	M	D	R	N	Y	L	A	S	V	L	A	G	S	G	L	S
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1mus chain A Region: 75 - 340 Aligned: 251 Modelled: 252 Confidence: 97.7% Identity: 12% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 1b7e chain A Region: 83 - 346 Aligned: 240 Modelled: 250 Confidence: 97.7% Identity: 10% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 2v9v chain A domain 2 Region: 42 - 110 Aligned: 69 Modelled: 69 Confidence: 79.2% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal fragment of elongation factor SelB Phyre2 PDB 2v9v chain A Region: 44 - 110 Aligned: 67 Modelled: 67 Confidence: 65.1% Identity: 12% PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) Phyre2 PDB 2ezh chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 50.9% Identity: 27% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 2ezi chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 49.1% Identity: 27% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 6pax chain A Region: 45 - 81 Aligned: 37 Modelled: 37 Confidence: 43.9% Identity: 22% PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Phyre2 PDB 3hef chain B Region: 30 - 92 Aligned: 46 Modelled: 48 Confidence: 40.9% Identity: 22% PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit Phyre2 PDB 2ply chain B Region: 44 - 108 Aligned: 65 Modelled: 65 Confidence: 22.7% Identity: 11% PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Phyre2 PDB 1e8q chain A Region: 301 - 312 Aligned: 11 Modelled: 12 Confidence: 20.2% Identity: 36% Fold: Cellulose docking domain, dockering Superfamily: Cellulose docking domain, dockering Family: Cellulose docking domain, dockering Phyre2 PDB 1pdn chain C Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 19.5% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 1dlw chain A Region: 70 - 119 Aligned: 46 Modelled: 50 Confidence: 19.4% Identity: 11% Fold: Globin-like Superfamily: Globin-like Family: Truncated hemoglobin Phyre2 PDB 2rfp chain A Region: 77 - 115 Aligned: 39 Modelled: 38 Confidence: 16.4% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution Phyre2 PDB 1ajz chain A Region: 151 - 209 Aligned: 57 Modelled: 59 Confidence: 15.5% Identity: 12% Fold: TIM beta/alpha-barrel Superfamily: Dihydropteroate synthetase-like Family: Dihydropteroate synthetase Phyre2 PDB 3aq8 chain A Region: 70 - 119 Aligned: 46 Modelled: 50 Confidence: 15.3% Identity: 4% PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form Phyre2 PDB 2fgg chain A domain 1 Region: 310 - 325 Aligned: 16 Modelled: 16 Confidence: 15.3% Identity: 31% Fold: dsRBD-like Superfamily: Rv2632c-like Family: Rv2632c-like Phyre2 PDB 2kvc chain A Region: 47 - 74 Aligned: 26 Modelled: 28 Confidence: 15.2% Identity: 23% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a Phyre2 PDB 3mx7 chain A Region: 99 - 115 Aligned: 17 Modelled: 17 Confidence: 14.8% Identity: 29% PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd Phyre2 PDB 2vp8 chain A Region: 143 - 209 Aligned: 65 Modelled: 67 Confidence: 14.8% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 Phyre2 PDB 1s69 chain A Region: 70 - 116 Aligned: 43 Modelled: 47 Confidence: 14.5% Identity: 21% Fold: Globin-like Superfamily: Globin-like Family: Truncated hemoglobin Phyre2 1 d1musa_ 2 d1b7ea_ 3 d2v9va2 4 c2v9vA_ 5 d2ezha_ 6 d2ezia_ 7 c6paxA_ 8 c3hefB_ 9 c2plyB_ 10 d1e8qa_ 11 d1pdnc_ 12 d1dlwa_ 13 c2rfpA_ 14 d1ajza_ 15 c3aq8A_ 16 d2fgga1 17 c2kvcA_ 18 c3mx7A_ 19 c2vp8A_ 20 d1s69a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1musa_ 97.7 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 2 d1b7ea_ 97.7 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 3 d2v9va2 79.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 4 c2v9vA_ 65.1 12 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 5 d2ezha_ 50.9 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 6 d2ezia_ 49.1 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 7 c6paxA_ 43.9 22 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 8 c3hefB_ 40.9 22 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 9 c2plyB_ 22.7 11 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 10 d1e8qa_ 20.2 36 Fold:Cellulose docking domain, dockering Superfamily:Cellulose docking domain, dockering Family:Cellulose docking domain, dockering 11 d1pdnc_ 19.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 12 d1dlwa_ 19.4 11 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 13 c2rfpA_ 16.4 15 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 14 d1ajza_ 15.5 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 15 c3aq8A_ 15.3 4 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 16 d2fgga1 15.3 31 Fold:dsRBD-like Superfamily:Rv2632c-like Family:Rv2632c-like 17 c2kvcA_ 15.2 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 18 c3mx7A_ 14.8 29 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd 19 c2vp8A_ 14.8 18 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 20 d1s69a_ 14.5 21 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 21 d1iyxa1 not modelled 13.3 19 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 22 c2k27A_ not modelled 13.2 25 PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain 23 c3ol4B_ not modelled 12.7 26 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 24 c3e2dB_ not modelled 12.4 17 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 25 c2j4mA_ not modelled 11.9 36 PDB header:protein binding Chain: A: PDB Molecule:endoglucanase 45a; PDBTitle: double dockerin from piromyces equi cel45a 26 d1idra_ not modelled 11.7 7 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 27 c1qcrD_ not modelled 11.3 8 PDB header: PDB COMPND: 28 d1mpga1 not modelled 11.3 11 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 29 d1g9ga_ not modelled 10.5 63 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 30 d1md6a_ not modelled 10.3 17 Fold:beta-Trefoil Superfamily:Cytokine Family:Interleukin-1 (IL-1) 31 c2y5sA_ not modelled 10.1 15 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 32 c2kzvA_ not modelled 9.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a 33 d3bpya1 not modelled 9.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 34 d1osna_ not modelled 9.7 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 35 c3rf7A_ not modelled 9.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 36 c1e17A_ not modelled 8.8 9 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 37 d2c6ya1 not modelled 8.8 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 38 c3r1iB_ not modelled 8.7 25 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: crystal structure of a short-chain type dehydrogenase/reductase from2 mycobacterium marinum 39 c1dlyA_ not modelled 8.5 12 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin; PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos 40 d1dlya_ not modelled 8.5 12 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 41 c3gk0H_ not modelled 8.4 20 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 42 c1l2aD_ not modelled 8.4 50 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 43 d1l1ya_ not modelled 8.4 50 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 44 d1w6ta1 not modelled 8.4 20 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 45 c3co7C_ not modelled 8.4 14 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 46 d2ilaa_ not modelled 8.1 22 Fold:beta-Trefoil Superfamily:Cytokine Family:Interleukin-1 (IL-1) 47 c3cwbQ_ not modelled 7.9 8 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 48 d2ptza1 not modelled 7.8 13 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 49 c3nswA_ not modelled 7.8 38 PDB header:immune system Chain: A: PDB Molecule:excretory-secretory protein 2; PDBTitle: crystal structure of ancylostoma ceylanicum excretory-secretory2 protein 2 50 d2ezla_ not modelled 7.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 51 c2yf3F_ not modelled 7.7 20 PDB header:hydrolase Chain: F: PDB Molecule:mazg-like nucleoside triphosphate pyrophosphohydrolase; PDBTitle: crystal structure of dr2231, the mazg-like protein from2 deinococcus radiodurans, complex with manganese 52 c2x4mD_ not modelled 7.7 27 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 53 c1hj0A_ not modelled 7.6 19 PDB header:actin binding peptide Chain: A: PDB Molecule:thymosin beta9; PDBTitle: thymosin beta9 54 d1g31a_ not modelled 7.6 13 Fold:GroES-like Superfamily:GroES-like Family:GroES 55 d2abka_ not modelled 7.3 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 56 c3hluA_ not modelled 7.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 57 c1p84D_ not modelled 7.1 11 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 58 d1vi7a1 not modelled 7.1 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 59 c2jpiA_ not modelled 7.1 17 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa 60 d1rh6a_ not modelled 7.0 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 61 d1eyea_ not modelled 6.8 19 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 62 c3g73A_ not modelled 6.8 17 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 63 d2a22a1 not modelled 6.7 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 64 d2giab1 not modelled 6.7 63 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Guide RNA binding protein gBP 65 c2giaB_ not modelled 6.7 63 PDB header:translation Chain: B: PDB Molecule:mitochondrial rna-binding protein 1; PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2 66 d1m5wa_ not modelled 6.6 24 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 67 d1pcna1 not modelled 6.5 36 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 68 c1gmuB_ not modelled 6.5 9 PDB header:metallochaperone Chain: B: PDB Molecule:uree; PDBTitle: structure of uree 69 d1ogla_ not modelled 6.5 18 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:Type II deoxyuridine triphosphatase 70 d1un2a_ not modelled 6.4 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 71 c3douA_ not modelled 6.4 21 PDB header:transferase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j; PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1 72 c3a44D_ not modelled 6.4 0 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 73 c3k6qB_ not modelled 6.4 14 PDB header:ligand binding protein Chain: B: PDB Molecule:putative ligand binding protein; PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution 74 d1d5va_ not modelled 6.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 75 d1xb4a2 not modelled 6.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 76 c1c94B_ not modelled 6.3 63 PDB header:gene regulation Chain: B: PDB Molecule:retro-gcn4 leucine zipper; PDBTitle: reversing the sequence of the gcn4 leucine zipper does not2 affect its fold. 77 d1ha7a_ not modelled 6.2 17 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 78 c2iucB_ not modelled 6.1 25 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 79 c2b99A_ not modelled 6.1 18 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor 80 d2hfha_ not modelled 6.0 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 81 c3a52A_ not modelled 6.0 18 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 82 d1pm6a_ not modelled 6.0 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 83 d1j3aa_ not modelled 6.0 13 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 84 d2czda1 not modelled 5.9 28 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 85 c2kl8A_ not modelled 5.9 14 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 86 d2o0ma1 not modelled 5.9 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 87 c2o0mA_ not modelled 5.9 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis 88 c3emkA_ not modelled 5.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis 89 d2a07f1 not modelled 5.8 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 90 d1f6ya_ not modelled 5.8 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 91 c2y6xA_ not modelled 5.8 11 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kd protein; PDBTitle: structure of psb27 from thermosynechococcus elongatus 92 d1yqea1 not modelled 5.8 13 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 93 d2i7pa1 not modelled 5.6 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 94 d1dqwa_ not modelled 5.6 27 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 95 c2dfjA_ not modelled 5.5 17 PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a 96 c2wdzD_ not modelled 5.5 16 PDB header:oxidoreductase Chain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol 97 d1xi8a3 not modelled 5.5 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 98 c3n1uA_ not modelled 5.5 15 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, had superfamily, subfamily iii a; PDBTitle: structure of putative had superfamily (subfamily iii a) hydrolase from2 legionella pneumophila 99 c3pk0B_ not modelled 5.5 16 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: crystal structure of short-chain dehydrogenase/reductase sdr from2 mycobacterium smegmatis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0