Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	T	N	I	E	Q	V	M	P	V	K	L	A	Q	A	L	A	N	P	L	F	P	A	L	D	S	A	L	R	S	G	R	H	I	G	L	D	E	L	D	N	H	A	F	L	M	D	F	Q	E	Y	L	E	E	F	Y	A	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?																										?	?				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	N	V	E	L	I	R	A	P	E	G	F	F	Y	L	R	P	R	S	T	T	L	I	P	R	S	V	L	S	E	L	D	M	M	V	G	K	I	L	C	Y	L	Y	L	S	P	E	R	L	A	N	E	G	I	F	T	Q	Q	E	L
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?			?	?																					?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	D	E	L	L	T	L	A	D	E	A	K	L	L	K	L	V	N	N	R	S	T	G	S	D	V	D	R	Q	K	L	Q	E	K	V	R	S	S	L	N	R	L	R	R	L	G	M	V	W	F	M	G	H	D	S	S	K	F	R	I
Secondary structure
SS confidence
Disorder									?	?									?	?	?	?	?	?	?	?	?	?																													?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence		T	E	S	V	F	R	F	G	A	D	V	R	A	G	D	D	P	R	E	A	Q	R	R	L	I	R	D	G	E	A	M	P	I	E	N	H	L	Q	L	N	D	E	T	E	E	N	Q	P	D	S	G	E	E	E
Secondary structure
SS confidence
Disorder													?	?	?	?	?																	?						?	?	?	?		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3euh chain F Region: 9 - 206 Aligned: 182 Modelled: 198 Confidence: 100.0% Identity: 100% PDB header:cell cycle Chain: F: PDB Molecule:muke; PDBTitle: crystal structure of the muke-mukf complex Phyre2 PDB 3euk chain L Region: 10 - 207 Aligned: 172 Modelled: 177 Confidence: 100.0% Identity: 69% PDB header:cell cycle Chain: L: PDB Molecule:chromosome partition protein muke; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer Phyre2 PDB 2y75 chain F Region: 87 - 183 Aligned: 69 Modelled: 73 Confidence: 68.1% Identity: 17% PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis Phyre2 PDB 3lwf chain D Region: 86 - 189 Aligned: 76 Modelled: 89 Confidence: 45.7% Identity: 18% PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution Phyre2 PDB 1eg4 chain A Region: 110 - 190 Aligned: 75 Modelled: 81 Confidence: 35.4% Identity: 16% PDB header:structural protein Chain: A: PDB Molecule:dystrophin; PDBTitle: structure of a dystrophin ww domain fragment in complex2 with a beta-dystroglycan peptide Phyre2 PDB 1u5t chain A domain 1 Region: 41 - 166 Aligned: 102 Modelled: 126 Confidence: 28.3% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Vacuolar sorting protein domain Phyre2 PDB 3k69 chain A Region: 155 - 183 Aligned: 29 Modelled: 29 Confidence: 27.7% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution Phyre2 PDB 3l09 chain B Region: 89 - 190 Aligned: 70 Modelled: 102 Confidence: 25.0% Identity: 23% PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution Phyre2 PDB 1e2t chain A Region: 51 - 167 Aligned: 84 Modelled: 103 Confidence: 24.0% Identity: 21% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Arylamine N-acetyltransferase Phyre2 PDB 3d9w chain A Region: 53 - 167 Aligned: 82 Modelled: 89 Confidence: 23.2% Identity: 32% PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure analysis of nocardia farcinica arylamine2 n-acetyltransferase Phyre2 PDB 2g9w chain A domain 1 Region: 86 - 181 Aligned: 65 Modelled: 76 Confidence: 23.0% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Penicillinase repressor Phyre2 PDB 1p6r chain A Region: 155 - 184 Aligned: 29 Modelled: 30 Confidence: 21.6% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Penicillinase repressor Phyre2 PDB 2fna chain A Region: 152 - 188 Aligned: 34 Modelled: 37 Confidence: 20.1% Identity: 12% PDB header:atp-binding protein Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of an archaeal aaa+ atpase (sso1545) from sulfolobus2 solfataricus p2 at 2.00 a resolution Phyre2 PDB 1w4t chain A domain 1 Region: 50 - 167 Aligned: 85 Modelled: 92 Confidence: 18.5% Identity: 16% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Arylamine N-acetyltransferase Phyre2 PDB 3kfw chain X Region: 96 - 192 Aligned: 69 Modelled: 95 Confidence: 17.7% Identity: 23% PDB header:structural genomics, unknown function Chain: X: PDB Molecule:uncharacterized protein; PDBTitle: uncharacterized protein rv0674 from mycobacterium tuberculosis Phyre2 PDB 2vfb chain A Region: 54 - 167 Aligned: 82 Modelled: 88 Confidence: 17.5% Identity: 34% PDB header:transferase Chain: A: PDB Molecule:arylamine n-acetyltransferase; PDBTitle: the structure of mycobacterium marinum arylamine n-2 acetyltransferase Phyre2 PDB 2pfr chain B Region: 52 - 167 Aligned: 81 Modelled: 88 Confidence: 17.4% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:arylamine n-acetyltransferase 2; PDBTitle: human n-acetyltransferase 2 Phyre2 PDB 2i2o chain B Region: 2 - 30 Aligned: 29 Modelled: 29 Confidence: 17.3% Identity: 24% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:eif4g-like protein; PDBTitle: crystal structure of an eif4g-like protein from danio rerio Phyre2 PDB 2z7b chain A Region: 148 - 183 Aligned: 36 Modelled: 36 Confidence: 16.1% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase Phyre2 PDB 3lmm chain A Region: 152 - 188 Aligned: 37 Modelled: 37 Confidence: 15.8% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the dip2311 protein from2 corynebacterium diphtheriae, northeast structural genomics3 consortium target cdr35 Phyre2 1 c3euhF_ 2 c3eukL_ 3 c2y75F_ 4 c3lwfD_ 5 c1eg4A_ 6 d1u5ta1 7 c3k69A_ 8 c3l09B_ 9 d1e2ta_ 10 c3d9wA_ 11 d2g9wa1 12 d1p6ra_ 13 c2fnaA_ 14 d1w4ta1 15 c3kfwX_ 16 c2vfbA_ 17 c2pfrB_ 18 c2i2oB_ 19 c2z7bA_ 20 c3lmmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3euhF_ 100.0 100 PDB header:cell cycle Chain: F: PDB Molecule:muke; PDBTitle: crystal structure of the muke-mukf complex 2 c3eukL_ 100.0 69 PDB header:cell cycle Chain: L: PDB Molecule:chromosome partition protein muke; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer 3 c2y75F_ 68.1 17 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 4 c3lwfD_ 45.7 18 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 5 c1eg4A_ 35.4 16 PDB header:structural protein Chain: A: PDB Molecule:dystrophin; PDBTitle: structure of a dystrophin ww domain fragment in complex2 with a beta-dystroglycan peptide 6 d1u5ta1 28.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 7 c3k69A_ 27.7 14 PDB header:transcription Chain: A: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution 8 c3l09B_ 25.0 23 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution 9 d1e2ta_ 24.0 21 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 10 c3d9wA_ 23.2 32 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure analysis of nocardia farcinica arylamine2 n-acetyltransferase 11 d2g9wa1 23.0 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 12 d1p6ra_ 21.6 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 13 c2fnaA_ 20.1 12 PDB header:atp-binding protein Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of an archaeal aaa+ atpase (sso1545) from sulfolobus2 solfataricus p2 at 2.00 a resolution 14 d1w4ta1 18.5 16 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 15 c3kfwX_ 17.7 23 PDB header:structural genomics, unknown function Chain: X: PDB Molecule:uncharacterized protein; PDBTitle: uncharacterized protein rv0674 from mycobacterium tuberculosis 16 c2vfbA_ 17.5 34 PDB header:transferase Chain: A: PDB Molecule:arylamine n-acetyltransferase; PDBTitle: the structure of mycobacterium marinum arylamine n-2 acetyltransferase 17 c2pfrB_ 17.4 12 PDB header:transferase Chain: B: PDB Molecule:arylamine n-acetyltransferase 2; PDBTitle: human n-acetyltransferase 2 18 c2i2oB_ 17.3 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:eif4g-like protein; PDBTitle: crystal structure of an eif4g-like protein from danio rerio 19 c2z7bA_ 16.1 19 PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase 20 c3lmmA_ 15.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the dip2311 protein from2 corynebacterium diphtheriae, northeast structural genomics3 consortium target cdr35 21 c2k4bA_ not modelled 15.3 24 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: copr repressor structure 22 d2p6ra1 not modelled 15.3 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 23 c2qenA_ not modelled 15.1 12 PDB header:unknown function Chain: A: PDB Molecule:walker-type atpase; PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi 24 c3cuqA_ not modelled 15.0 27 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 25 c2rnoA_ not modelled 14.8 13 PDB header:ligase Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: solution structure of the n-terminal sap domain of sumo e3 ligases2 from oryza sativa 26 d2bsza1 not modelled 14.0 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 27 d2hs5a1 not modelled 13.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 28 c3b73A_ not modelled 13.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phih1 repressor-like protein; PDBTitle: crystal structure of the phih1 repressor-like protein from2 haloarcula marismortui 29 c2rn5B_ not modelled 12.7 50 PDB header:hormone Chain: B: PDB Molecule:insulin; PDBTitle: humal insulin mutant b31lys-b32arg 30 d1e4cp_ not modelled 12.6 24 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 31 d1j93a_ not modelled 12.3 9 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 32 c2zmeA_ not modelled 11.4 27 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 33 c3g12A_ not modelled 11.2 10 PDB header:lyase Chain: A: PDB Molecule:putative lactoylglutathione lyase; PDBTitle: crystal structure of a putative lactoylglutathione lyase2 from bdellovibrio bacteriovorus 34 c2p1nD_ not modelled 10.8 15 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 35 d1mzba_ not modelled 10.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 36 c2lbfA_ not modelled 10.7 28 PDB header:ribosomal protein Chain: A: PDB Molecule:60s acidic ribosomal protein p1; PDBTitle: solution structure of the dimerization domain of human ribosomal2 protein p1/p2 heterodimer 37 c3iynN_ not modelled 10.6 22 PDB header:virus Chain: N: PDB Molecule:peripentonal hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 38 c2dvzA_ not modelled 10.5 10 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter 39 c1t98B_ not modelled 10.3 14 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of mukf(1-287) 40 d1tgra_ not modelled 10.0 14 Fold:Insulin-like Superfamily:Insulin-like Family:Insulin-like 41 c2fk5B_ not modelled 10.0 28 PDB header:lyase Chain: B: PDB Molecule:fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from thermus2 thermophilus hb8 42 c3q90A_ not modelled 10.0 30 PDB header:hydrolase Chain: A: PDB Molecule:ras gtpase-activating protein-binding protein 1; PDBTitle: crystal structure of the ntf2 domain of ras gtpase-activating protein-2 binding protein 1 43 c2ovqA_ not modelled 9.8 14 PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 44 d1mkma1 not modelled 9.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 45 d1l1sa_ not modelled 9.8 22 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 46 d1jjcb2 not modelled 9.7 23 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 47 c3lnbA_ not modelled 9.4 27 PDB header:transferase Chain: A: PDB Molecule:n-acetyltransferase family protein; PDBTitle: crystal structure analysis of arylamine n-acetyltransferase c from2 bacillus anthracis 48 d2ex3b1 not modelled 9.4 14 Fold:DNA terminal protein Superfamily:DNA terminal protein Family:DNA terminal protein 49 c2o4cB_ not modelled 9.2 17 PDB header:oxidoreductase Chain: B: PDB Molecule:erythronate-4-phosphate dehydrogenase; PDBTitle: crystal structure of d-erythronate-4-phosphate dehydrogenase complexed2 with nad 50 c1qoyA_ not modelled 9.2 8 PDB header:toxin Chain: A: PDB Molecule:hemolysin e; PDBTitle: e.coli hemolysin e (hlye, clya, shea) 51 d1ecsa_ not modelled 9.0 17 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 52 c3edpB_ not modelled 8.9 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 53 d1xd7a_ not modelled 8.6 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 54 d1ylfa1 not modelled 8.6 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 55 c3iz5t_ not modelled 8.3 31 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 56 d1stza1 not modelled 8.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 57 c3oetF_ not modelled 8.0 11 PDB header:oxidoreductase Chain: F: PDB Molecule:erythronate-4-phosphate dehydrogenase; PDBTitle: d-erythronate-4-phosphate dehydrogenase complexed with nad 58 c3eqxB_ not modelled 7.8 11 PDB header:dna binding protein Chain: B: PDB Molecule:fic domain containing transcriptional regulator; PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution 59 d1efea_ not modelled 7.6 20 Fold:Insulin-like Superfamily:Insulin-like Family:Insulin-like 60 d2fnaa1 not modelled 7.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 61 c3euhB_ not modelled 7.3 10 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex 62 c2fe3B_ not modelled 7.3 19 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 63 c3g2bA_ not modelled 7.0 8 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 64 d2e45a1 not modelled 7.0 13 Fold:WW domain-like Superfamily:WW domain Family:WW domain 65 c2g7uB_ not modelled 7.0 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1 66 d1zeia_ not modelled 6.8 26 Fold:Insulin-like Superfamily:Insulin-like Family:Insulin-like 67 d1jhfa1 not modelled 6.8 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 68 d1sd4a_ not modelled 6.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 69 c3mwmA_ not modelled 6.6 25 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 70 d2b5ga1 not modelled 6.4 19 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 71 d1edla_ not modelled 6.4 32 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 72 d1d1la_ not modelled 6.3 38 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 73 c3m1gC_ not modelled 6.3 17 PDB header:transferase Chain: C: PDB Molecule:putative glutathione s-transferase; PDBTitle: the structure of a putative glutathione s-transferase from2 corynebacterium glutamicum 74 d1w5ra1 not modelled 6.3 27 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 75 d2al6a3 not modelled 6.2 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 76 c3gy9A_ not modelled 6.2 16 PDB header:transferase Chain: A: PDB Molecule:gcn5-related n-acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_001815201.1) from2 exiguobacterium sp. 255-15 at 1.52 a resolution 77 d1lp1a_ not modelled 6.1 21 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 78 d4croa_ not modelled 5.8 38 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 79 c1jpkA_ not modelled 5.8 17 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase 80 c3f8mA_ not modelled 5.8 31 PDB header:transcription Chain: A: PDB Molecule:gntr-family protein transcriptional regulator; PDBTitle: crystal structure of phnf from mycobacterium smegmatis 81 c2advB_ not modelled 5.8 43 PDB header:hydrolase Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism 82 d2v5pc1 not modelled 5.7 17 Fold:Insulin-like Superfamily:Insulin-like Family:Insulin-like 83 c2de0X_ not modelled 5.7 13 PDB header:transferase Chain: X: PDB Molecule:alpha-(1,6)-fucosyltransferase; PDBTitle: crystal structure of human alpha 1,6-fucosyltransferase, fut8 84 d1pmxa_ not modelled 5.6 16 Fold:Insulin-like Superfamily:Insulin-like Family:Insulin-like 85 c3ic7A_ not modelled 5.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron 86 c2du9A_ not modelled 5.4 10 PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulators; PDBTitle: crystal structure of the transcriptional factor from c.glutamicum 87 d1r3sa_ not modelled 5.4 17 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 88 c2jobA_ not modelled 5.3 19 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 89 d2cyya1 not modelled 5.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 90 c2qpqC_ not modelled 5.3 3 PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis 91 d1nn4a_ not modelled 5.2 11 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 92 c3izct_ not modelled 5.2 12 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein rpl19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0