Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP38054
DateThu Jan 5 11:57:54 GMT 2012
Unique Job ID7903655c87458e30

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3k07A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
Confidence and coverage
Confidence:100.0% Coverage: 98%
1024 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQI
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQVQGK
Secondary structure 
SS confidence 
Disorder 
??????
????
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LPAGVSAELGPDATGVGWIYEYALVDRSGKHDLADLRSLQDWFLKYELKTIPDVAEVASV
Secondary structure 
SS confidence 
Disorder  ???
??????????????
??
??
???
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASGYLQTL
Secondary structure 
SS confidence 
Disorder  ?
?
???????
??
?
?
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  DDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIAELNGEGEVAGGVVILRSGKNAREV
Secondary structure 
SS confidence 
Disorder 
?
???
????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  IAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHV
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  RSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEE
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  WQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAF
Secondary structure 
SS confidence 
Disorder 
???????????
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  TKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRFLIRVYHPLLLKVLHWPKTTL
Secondary structure 
SS confidence 
Disorder 
??????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  LVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVP
Secondary structure 
SS confidence 
Disorder 
??????
???
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  EVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLAN
Secondary structure 
SS confidence 
Disorder 
?
?????????????
????
??
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  LWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEG
Secondary structure 
SS confidence 
Disorder  ???????????????????
?
?
???????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  GRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSP
Secondary structure 
SS confidence 
Disorder  ?
?
???
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  QALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDL
Secondary structure 
SS confidence 
Disorder 
?
?
?
??
?
??????
???
?????
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  QKAIAEKVQLKPGTSVAFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLI
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........910.........920.........930.........940.........950.........960
Sequence  ISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNN
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........970.........980.........990.........1000.........1010.........1020
Sequence  PQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGM
Secondary structure 
SS confidence 
Disorder  ??????
??
Disorder confidence 
 
   .........1030.........1040.......
Sequence  ITAPLLSLFIIPAAYKLMWLHRHRVRK
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3k07 chain A

3D model

Region: 5 - 1039
Aligned: 1024
Modelled: 1035
Confidence: 100.0%
Identity: 100%
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa

Phyre2

PDB 1oy8 chain A

3D model

Region: 12 - 1045
Aligned: 997
Modelled: 1034
Confidence: 100.0%
Identity: 20%
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump

Phyre2

PDB 3aqp chain B

3D model

Region: 88 - 1041
Aligned: 678
Modelled: 735
Confidence: 100.0%
Identity: 14%
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus

Phyre2

PDB 1iwg chain A domain 8

3D model

Region: 832 - 1045
Aligned: 204
Modelled: 214
Confidence: 100.0%
Identity: 19%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2

PDB 1iwg chain A domain 7

3D model

Region: 302 - 506
Aligned: 195
Modelled: 205
Confidence: 100.0%
Identity: 23%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2

PDB 1iwg chain A domain 1

3D model

Region: 42 - 137
Aligned: 96
Modelled: 96
Confidence: 99.9%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 2

3D model

Region: 228 - 328
Aligned: 99
Modelled: 101
Confidence: 99.7%
Identity: 27%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 5

3D model

Region: 186 - 270
Aligned: 85
Modelled: 85
Confidence: 99.6%
Identity: 26%
Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains

Phyre2

PDB 1iwg chain A domain 6

3D model

Region: 722 - 809
Aligned: 88
Modelled: 88
Confidence: 99.3%
Identity: 16%
Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains

Phyre2

PDB 1iwg chain A domain 3

3D model

Region: 565 - 654
Aligned: 87
Modelled: 90
Confidence: 98.1%
Identity: 14%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 4

3D model

Region: 687 - 858
Aligned: 82
Modelled: 84
Confidence: 96.6%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 2rop chain A

3D model

Region: 66 - 212
Aligned: 119
Modelled: 137
Confidence: 94.6%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b

Phyre2

PDB 2ew9 chain A

3D model

Region: 66 - 212
Aligned: 122
Modelled: 142
Confidence: 93.5%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6

Phyre2

PDB 1s6u chain A

3D model

Region: 162 - 212
Aligned: 45
Modelled: 51
Confidence: 89.1%
Identity: 22%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2aw0 chain A

3D model

Region: 162 - 212
Aligned: 45
Modelled: 51
Confidence: 88.4%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1q8l chain A

3D model

Region: 162 - 216
Aligned: 49
Modelled: 50
Confidence: 87.9%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 1yg0 chain A

3D model

Region: 162 - 212
Aligned: 44
Modelled: 51
Confidence: 87.3%
Identity: 20%
PDB header:metal transport
Chain: A: PDB Molecule:cop associated protein;
PDBTitle: solution structure of apo-copp from helicobacter pylori

Phyre2

PDB 1yjr chain A

3D model

Region: 162 - 216
Aligned: 49
Modelled: 55
Confidence: 87.0%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein

Phyre2

PDB 2kkh chain A

3D model

Region: 162 - 212
Aligned: 45
Modelled: 51
Confidence: 86.5%
Identity: 27%
PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4

Phyre2

PDB 1cpz chain A

3D model

Region: 162 - 212
Aligned: 45
Modelled: 51
Confidence: 86.4%
Identity: 16%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
1
c3k07A_
2
c1oy8A_
3
c3aqpB_
4
d1iwga8
5
d1iwga7
6
d1iwga1
7
d1iwga2
8
d1iwga5
9
d1iwga6
10
d1iwga3
11
d1iwga4
12
c2ropA_
13
c2ew9A_
14
d1s6ua_
15
d2aw0a_
16
d1q8la_
17
c1yg0A_
18
c1yjrA_
19
c2kkhA_
20
d1cpza_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
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44
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48
49
50
51
52
53
54
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57
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59
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61
62
63
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65
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68
69
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71
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73
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79
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96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3k07A_
100.0 100 PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
2c1oy8A_
100.0 20 PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
3c3aqpB_
100.0 14 PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
4d1iwga8
100.0 19 Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
5d1iwga7
100.0 23 Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
6d1iwga1
99.9 24 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
7d1iwga2
99.7 27 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
8d1iwga5
99.6 26 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
9d1iwga6
99.3 16 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
10d1iwga3
98.1 14 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
11d1iwga4
96.6 28 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
12c2ropA_
94.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b
13c2ew9A_
93.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6
14d1s6ua_
89.1 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
15d2aw0a_
88.4 18 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
16d1q8la_
87.9 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
17c1yg0A_
87.3 20 PDB header:metal transport
Chain: A: PDB Molecule:cop associated protein;
PDBTitle: solution structure of apo-copp from helicobacter pylori
18c1yjrA_
87.0 10 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein
19c2kkhA_
86.5 27 PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4
20d1cpza_
86.4 16 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
21d1kvja_
not modelled 86.2 18 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
22d2qifa1
not modelled 86.2 12 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
23d1p6ta2
not modelled 85.3 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
24c2rmlA_
not modelled 84.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa
25d1osda_
not modelled 84.4 14 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
26c2ldiA_
not modelled 84.2 22 PDB header:hydrolase
Chain: A: PDB Molecule:zinc-transporting atpase;
PDBTitle: nmr solution structure of ziaan sub mutant
27d1p6ta1
not modelled 83.9 18 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
28c2ofhX_
not modelled 83.8 22 PDB header:hydrolase, membrane protein
Chain: X: PDB Molecule:zinc-transporting atpase;
PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form
29c2ga7A_
not modelled 83.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein)
30c2kt2A_
not modelled 83.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
31c2l3mA_
not modelled 82.4 15 PDB header:metal binding protein
Chain: A: PDB Molecule:copper-ion-binding protein;
PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
32c3dxsX_
not modelled 81.4 15 PDB header:hydrolase
Chain: X: PDB Molecule:copper-transporting atpase ran1;
PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase
33c1y3kA_
not modelled 79.2 8 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
34d2ggpb1
not modelled 77.7 18 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
35d1afia_
not modelled 75.2 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
36c2gcfA_
not modelled 68.5 8 PDB header:hydrolase
Chain: A: PDB Molecule:cation-transporting atpase pacs;
PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form
37d1mwza_
not modelled 65.0 23 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
38d1qupa2
not modelled 64.4 14 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
39c2k2pA_
not modelled 62.8 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
40d1sb6a_
not modelled 61.7 11 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
41c1jk9D_
not modelled 60.4 13 PDB header:oxidoreductase
Chain: D: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: heterodimer between h48f-ysod1 and yccs
42c1yj7A_
not modelled 56.0 10 PDB header:protein transport
Chain: A: PDB Molecule:escj;
PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
43c2yvxD_
not modelled 53.8 12 PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
44c2aj1A_
not modelled 52.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:probable cadmium-transporting atpase;
PDBTitle: solution structure of apocada
45c3j09A_
not modelled 48.9 13 PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
46c2crlA_
not modelled 48.7 15 PDB header:chaperone
Chain: A: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase
47c2zztA_
not modelled 45.0 6 PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein
48c2rogA_
not modelled 44.6 17 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells
49c1qupA_
not modelled 42.9 13 PDB header:chaperone
Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone;
PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase
50d1cc8a_
not modelled 37.5 12 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
51d1pw4a_
not modelled 31.7 10 Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
52c1nwaA_
not modelled 30.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine
53d1nwaa_
not modelled 30.4 18 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
54d2cu6a1
not modelled 30.1 17 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
55c2fyfB_
not modelled 29.2 15 PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
56d2vv5a2
not modelled 28.0 9 Fold:Ferredoxin-like
Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain
Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
57c2kyzA_
not modelled 24.5 16 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
58d1f7ua3
not modelled 19.0 21 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Family:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
59c3bqhA_
not modelled 18.6 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
60c2z51A_
not modelled 17.6 11 PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 2, chloroplast;
PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis
61c2yy3B_
not modelled 17.6 16 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii
62c3g7sA_
not modelled 16.5 16 PDB header:ligase
Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1);
PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus
63c2vxaL_
not modelled 15.9 14 PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin
64c3oqtP_
not modelled 15.6 17 PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
65c3fh6F_
not modelled 15.5 12 PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
66c2y9jt_
not modelled 15.0 15 PDB header:protein transport
Chain: T: PDB Molecule:protein prgh;
PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
67d2ux9a1
not modelled 14.8 11 Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
68c1u5tA_
not modelled 13.9 7 PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
69c2j89A_
not modelled 13.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
70c3e0mB_
not modelled 13.4 30 PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
71c2yg8B_
not modelled 13.4 32 PDB header:hydrolase
Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative;
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans
72d2cfxa2
not modelled 13.2 5 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
73c3c6fD_
not modelled 13.2 12 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:yetf protein;
PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis
74d1uwda_
not modelled 13.2 19 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
75c1vs3B_
not modelled 12.7 17 PDB header:isomerase
Chain: B: PDB Molecule:trna pseudouridine synthase a;
PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8
76c3fryB_
not modelled 12.5 9 PDB header:hydrolase
Chain: B: PDB Molecule:probable copper-exporting p-type atpase a;
PDBTitle: crystal structure of the copa c-terminal metal binding domain
77c2jnvA_
not modelled 12.4 22 PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 1, chloroplast;
PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa
78c3p14C_
not modelled 12.1 14 PDB header:isomerase
Chain: C: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase with a novel high thermo-2 stability from bacillus halodurans
79c3onrI_
not modelled 12.0 19 PDB header:metal binding protein
Chain: I: PDB Molecule:protein transport protein sece2;
PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site
80c2kssA_
not modelled 12.0 18 PDB header:transcription regulator
Chain: A: PDB Molecule:carotenogenesis protein cars;
PDBTitle: nmr structure of myxococcus xanthus antirepressor cars1
81d1vkoa1
not modelled 11.4 8 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
82d1nh8a2
not modelled 11.0 21 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
83c3f10A_
not modelled 10.8 32 PDB header:hydrolase, lyase
Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase;
PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine
84c2wzoA_
not modelled 10.8 11 PDB header:cell cycle
Chain: A: PDB Molecule:transforming growth factor beta regulator 1;
PDBTitle: the structure of the fyr domain
85c2hdiA_
not modelled 10.7 27 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
86d2cyya2
not modelled 10.6 9 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
87d2phcb2
not modelled 10.5 15 Fold:DCoH-like
Superfamily:PH0987 N-terminal domain-like
Family:PH0987 N-terminal domain-like
88d1nvmb2
not modelled 10.4 13 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
89c3iplB_
not modelled 10.2 18 PDB header:ligase
Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: crystal structure of o-succinylbenzoic acid-coa ligase from2 staphylococcus aureus subsp. aureus mu50
90d2cg4a2
not modelled 10.0 5 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
91d1xhja_
not modelled 10.0 13 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
92c3g74B_
not modelled 9.9 50 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein of unknown function;
PDBTitle: crystal structure of a functionally unknown protein from eubacterium2 ventriosum atcc 27560
93d1s7ba_
not modelled 9.9 13 Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
94d1wqga1
not modelled 9.9 15 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
95d1ib8a2
not modelled 9.8 12 Fold:Alpha-lytic protease prodomain-like
Superfamily:YhbC-like, N-terminal domain
Family:YhbC-like, N-terminal domain
96d2b3ya2
not modelled 9.7 33 Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
97d1ciia1
not modelled 9.7 21 Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
98d1ek8a_
not modelled 9.5 31 Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
99c3p02A_
not modelled 9.5 12 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein of unknown function (bacova_00267) from2 bacteroides ovatus at 1.55 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0