PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vs3B_

Fold library id	PDB Header	Molecule	Title
c1vs3B_	PDB header: isomerase	Chain: B: PDB Molecule: trna pseudouridine synthase a;	PDBTitle: crystal structure of the trna pseudouridine synthase trua2 from thermus thermophilus hb8

Links to external resources
Added to library: Tue Mar 16 14:24:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M R R L L L L C E Y D G T L F A G L Q R Q G R G L R T V Q G E L E R A L P G I G A L P K A V A A G R T D A G V H A L A M P F H V D V E S A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S
S T T
G G G G T B
S
S S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P V E K V P E A L N R L L P E D L K V V G A R E V A P D F H A R K D A L W R A Y R Y R I L V R P H P S P L L R H R A L W V R R P L D L E A M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T
T T
T T T T
S S S S
T T T T T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E E A L S L L L G R H N F L G F A K E E T R P G E R E L L E A R L Q V A E G E A G L E V R L Y F R G K S F L R G Q V R G M V G T L L E V G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S
S
S S
S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . .

Sequence G K R P P E S L K A I L K T A D R R L A G P T A P A H G L Y F V E A A Y P E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T
G G G S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	R	R	L	L	L	L	C	E	Y	D	G	T	L	F	A	G	L	Q	R	Q	G	R	G	L	R	T	V	Q	G	E	L	E	R	A	L	P	G	I	G	A	L	P	K	A	V	A	A	G	R	T	D	A	G	V	H	A	L	A	M	P	F	H	V	D	V	E	S	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S	S		S	S			S	T	T												G	G	G	G	T	B		S					S	S				T	T														S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	V	E	K	V	P	E	A	L	N	R	L	L	P	E	D	L	K	V	V	G	A	R	E	V	A	P	D	F	H	A	R	K	D	A	L	W	R	A	Y	R	Y	R	I	L	V	R	P	H	P	S	P	L	L	R	H	R	A	L	W	V	R	R	P	L	D	L	E	A	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G									S		T	T											T	T			T	T	T	T		S											S	S	S			T	T	T	T	T	T	S					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	E	A	L	S	L	L	L	G	R	H	N	F	L	G	F	A	K	E	E	T	R	P	G	E	R	E	L	L	E	A	R	L	Q	V	A	E	G	E	A	G	L	E	V	R	L	Y	F	R	G	K	S	F	L	R	G	Q	V	R	G	M	V	G	T	L	L	E	V	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G		S	S			S																	S	S											S				T	T														S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Sequence	G	K	R	P	P	E	S	L	K	A	I	L	K	T	A	D	R	R	L	A	G	P	T	A	P	A	H	G	L	Y	F	V	E	A	A	Y	P	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S		T	T											G	G	G	S						G	G	G