Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Q	S	H	F	F	A	H	L	S	R	L	K	L	I	N	R	W	P	L	M	R	N	V	R	T	E	N	V	S	E	H	S	L	Q	V	A	M	V	A	H	A	L	A	A	I	K	N	R	K	F	G	G	N	V	N	A	E	R
Secondary structure
SS confidence
Disorder		?	?																					?																										?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	L	L	A	M	Y	H	D	A	S	E	V	L	T	G	D	L	P	T	P	V	K	Y	F	N	S	Q	I	A	Q	E	Y	K	A	I	E	K	I	A	Q	Q	K	L	V	D	M	V	P	E	E	L	R	D	I	F	A	P	L	I
Secondary structure
SS confidence
Disorder																										?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	E	H	A	Y	S	D	E	E	K	S	L	V	K	Q	A	D	A	L	C	A	Y	L	K	C	L	E	E	L	A	A	G	N	N	E	F	L	L	A	K	T	R	L	E	A	T	L	E	A	R	R	S	Q	E	M	D	Y	F	M	E
Secondary structure
SS confidence
Disorder					?																											?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Sequence		I	F	V	P	S	F	H	L	S	L	D	E	I	S	Q	D	S	P	L
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2paq chain A domain 1 Region: 2 - 187 Aligned: 177 Modelled: 177 Confidence: 100.0% Identity: 96% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3mzo chain A Region: 2 - 195 Aligned: 192 Modelled: 194 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:lin2634 protein; PDBTitle: crystal structure of a hd-domain phosphohydrolase (lin2634) from2 listeria innocua at 1.98 a resolution Phyre2 PDB 3kh1 chain B Region: 2 - 185 Aligned: 171 Modelled: 180 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:predicted metal-dependent phosphohydrolase; PDBTitle: crystal structure of predicted metal-dependent2 phosphohydrolase (zp_00055740.2) from magnetospirillum3 magnetotacticum ms-1 at 1.37 a resolution Phyre2 PDB 1xx7 chain A Region: 3 - 188 Aligned: 168 Modelled: 186 Confidence: 100.0% Identity: 26% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2cqz chain A Region: 4 - 187 Aligned: 167 Modelled: 184 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long hypothetical protein; PDBTitle: crystal structure of ph0347 protein from pyrococcus horikoshii ot3 Phyre2 PDB 1ynb chain A domain 1 Region: 2 - 185 Aligned: 155 Modelled: 161 Confidence: 100.0% Identity: 20% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2gz4 chain A domain 1 Region: 8 - 155 Aligned: 123 Modelled: 135 Confidence: 99.9% Identity: 26% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2pq7 chain A domain 1 Region: 10 - 197 Aligned: 155 Modelled: 170 Confidence: 99.1% Identity: 13% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2qgs chain A domain 1 Region: 32 - 197 Aligned: 145 Modelled: 150 Confidence: 98.9% Identity: 18% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3b57 chain A domain 1 Region: 32 - 199 Aligned: 142 Modelled: 148 Confidence: 98.9% Identity: 17% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2pjq chain A domain 1 Region: 32 - 197 Aligned: 138 Modelled: 144 Confidence: 98.9% Identity: 17% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3gw7 chain A Region: 33 - 197 Aligned: 142 Modelled: 148 Confidence: 98.8% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein yedj; PDBTitle: crystal structure of a metal-dependent phosphohydrolase2 with conserved hd domain (yedj) from escherichia coli in3 complex with nickel ions. northeast structural genomics4 consortium target er63 Phyre2 PDB 3dto chain A domain 1 Region: 32 - 197 Aligned: 138 Modelled: 146 Confidence: 98.8% Identity: 15% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3djb chain A domain 1 Region: 32 - 197 Aligned: 142 Modelled: 166 Confidence: 98.7% Identity: 20% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2ogi chain A Region: 1 - 140 Aligned: 122 Modelled: 128 Confidence: 98.6% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein sag1661; PDBTitle: crystal structure of a putative metal dependent phosphohydrolase2 (sag1661) from streptococcus agalactiae serogroup v at 1.85 a3 resolution Phyre2 PDB 3ccg chain A Region: 32 - 140 Aligned: 103 Modelled: 109 Confidence: 98.5% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:hd superfamily hydrolase; PDBTitle: crystal structure of predicted hd superfamily hydrolase involved in2 nad metabolism (np_347894.1) from clostridium acetobutylicum at 1.503 a resolution Phyre2 PDB 2o08 chain B Region: 32 - 140 Aligned: 103 Modelled: 109 Confidence: 98.5% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:bh1327 protein; PDBTitle: crystal structure of a putative hd superfamily hydrolase (bh1327) from2 bacillus halodurans at 1.90 a resolution Phyre2 PDB 3m1t chain A Region: 32 - 141 Aligned: 102 Modelled: 110 Confidence: 97.6% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of putative phosphohydrolase (yp_929327.1) from2 shewanella amazonensis sb2b at 1.62 a resolution Phyre2 PDB 2dqb chain B Region: 32 - 147 Aligned: 96 Modelled: 102 Confidence: 97.5% Identity: 18% PDB header:hydrolase, dna binding protein Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative; PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase Phyre2 PDB 3i7a chain A Region: 32 - 140 Aligned: 109 Modelled: 109 Confidence: 97.4% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphohydrolase; PDBTitle: crystal structure of putative metal-dependent phosphohydrolase2 (yp_926882.1) from shewanella amazonensis sb2b at 2.06 a resolution Phyre2 1 d2paqa1 2 c3mzoA_ 3 c3kh1B_ 4 d1xx7a_ 5 c2cqzA_ 6 d1ynba1 7 d2gz4a1 8 d2pq7a1 9 d2qgsa1 10 d3b57a1 11 d2pjqa1 12 c3gw7A_ 13 d3dtoa1 14 d3djba1 15 c2ogiA_ 16 c3ccgA_ 17 c2o08B_ 18 c3m1tA_ 19 c2dqbB_ 20 c3i7aA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2paqa1 100.0 96 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 2 c3mzoA_ 100.0 26 PDB header:hydrolase Chain: A: PDB Molecule:lin2634 protein; PDBTitle: crystal structure of a hd-domain phosphohydrolase (lin2634) from2 listeria innocua at 1.98 a resolution 3 c3kh1B_ 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:predicted metal-dependent phosphohydrolase; PDBTitle: crystal structure of predicted metal-dependent2 phosphohydrolase (zp_00055740.2) from magnetospirillum3 magnetotacticum ms-1 at 1.37 a resolution 4 d1xx7a_ 100.0 26 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 5 c2cqzA_ 100.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long hypothetical protein; PDBTitle: crystal structure of ph0347 protein from pyrococcus horikoshii ot3 6 d1ynba1 100.0 20 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 7 d2gz4a1 99.9 26 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 8 d2pq7a1 99.1 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 9 d2qgsa1 98.9 18 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 10 d3b57a1 98.9 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 11 d2pjqa1 98.9 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 12 c3gw7A_ 98.8 21 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein yedj; PDBTitle: crystal structure of a metal-dependent phosphohydrolase2 with conserved hd domain (yedj) from escherichia coli in3 complex with nickel ions. northeast structural genomics4 consortium target er63 13 d3dtoa1 98.8 15 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 14 d3djba1 98.7 20 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 15 c2ogiA_ 98.6 16 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein sag1661; PDBTitle: crystal structure of a putative metal dependent phosphohydrolase2 (sag1661) from streptococcus agalactiae serogroup v at 1.85 a3 resolution 16 c3ccgA_ 98.5 19 PDB header:hydrolase Chain: A: PDB Molecule:hd superfamily hydrolase; PDBTitle: crystal structure of predicted hd superfamily hydrolase involved in2 nad metabolism (np_347894.1) from clostridium acetobutylicum at 1.503 a resolution 17 c2o08B_ 98.5 13 PDB header:hydrolase Chain: B: PDB Molecule:bh1327 protein; PDBTitle: crystal structure of a putative hd superfamily hydrolase (bh1327) from2 bacillus halodurans at 1.90 a resolution 18 c3m1tA_ 97.6 13 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of putative phosphohydrolase (yp_929327.1) from2 shewanella amazonensis sb2b at 1.62 a resolution 19 c2dqbB_ 97.5 18 PDB header:hydrolase, dna binding protein Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative; PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase 20 c3i7aA_ 97.4 13 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphohydrolase; PDBTitle: crystal structure of putative metal-dependent phosphohydrolase2 (yp_926882.1) from shewanella amazonensis sb2b at 2.06 a resolution 21 c3hc1A_ not modelled 97.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution 22 c3memA_ not modelled 96.9 15 PDB header:signaling protein Chain: A: PDB Molecule:putative signal transduction protein; PDBTitle: crystal structure of a putative signal transduction protein2 (maqu_0641) from marinobacter aquaeolei vt8 at 2.25 a resolution 23 c3nqwB_ not modelled 96.8 17 PDB header:hydrolase Chain: B: PDB Molecule:cg11900; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses 24 c3nr1A_ not modelled 96.7 20 PDB header:hydrolase Chain: A: PDB Molecule:hd domain-containing protein 3; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses 25 d2heka1 not modelled 96.5 22 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 26 c2o6iA_ not modelled 96.5 23 PDB header:hydrolase Chain: A: PDB Molecule:hd domain protein; PDBTitle: structure of an enterococcus faecalis hd domain phosphohydrolase 27 d2o6ia1 not modelled 96.5 23 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 28 d1vqra_ not modelled 96.4 10 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:modified HD domain 29 c2q14A_ not modelled 96.3 21 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase; PDBTitle: crystal structure of phosphohydrolase (bt4208) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution 30 c3u1nC_ not modelled 96.3 24 PDB header:hydrolase Chain: C: PDB Molecule:sam domain and hd domain-containing protein 1; PDBTitle: structure of the catalytic core of human samhd1 31 c3ljvA_ not modelled 95.7 15 PDB header:transcription Chain: A: PDB Molecule:mmoq response regulator; PDBTitle: crystal structure of mmoq response regulator (fragment 29-302) from2 methylococcus capsulatus str. bath, northeast structural genomics3 consortium target mcr175m 32 c2pgsA_ not modelled 95.2 19 PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyguanosinetriphosphate triphosphohydrolase; PDBTitle: crystal structure of a putative deoxyguanosinetriphosphate2 triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a 33 d1vj7a1 not modelled 94.0 21 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 34 c3bg2A_ not modelled 93.7 32 PDB header:hydrolase Chain: A: PDB Molecule:dgtp triphosphohydrolase; PDBTitle: crystal structure of deoxyguanosinetriphosphate triphosphohydrolase2 from flavobacterium sp. med217 35 c1vj7B_ not modelled 93.3 23 PDB header:hydrolase, transferase Chain: B: PDB Molecule:bifunctional rela/spot; PDBTitle: crystal structure of the bifunctional catalytic fragment of relseq,2 the rela/spot homolog from streptococcus equisimilis. 36 c3skdA_ not modelled 88.6 22 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein tthb187; PDBTitle: crystal structure of the thermus thermophilus cas3 hd domain in the2 presence of ni2+ 37 c3kq5A_ not modelled 84.6 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical cytosolic protein; PDBTitle: crystal structure of an uncharacterized protein from coxiella burnetii 38 d1u6za1 not modelled 78.5 12 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:Ppx associated domain 39 c1xotB_ not modelled 70.9 18 PDB header:hydrolase Chain: B: PDB Molecule:camp-specific 3',5'-cyclic phosphodiesterase 4b; PDBTitle: catalytic domain of human phosphodiesterase 4b in complex with2 vardenafil 40 d1y2ka1 not modelled 70.8 14 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 41 c3m5fA_ not modelled 66.1 15 PDB header:hydrolase Chain: A: PDB Molecule:metal dependent phosphohydrolase; PDBTitle: structure of mj0384, a cas3 protein from methanocaldococcus jannaschii 42 d1taza_ not modelled 65.3 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 43 c2r8qA_ not modelled 63.2 12 PDB header:hydrolase Chain: A: PDB Molecule:class i phosphodiesterase pdeb1; PDBTitle: structure of lmjpdeb1 in complex with ibmx 44 c1xozA_ not modelled 63.1 17 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: catalytic domain of human phosphodiesterase 5a in complex2 with tadalafil 45 d3dy8a1 not modelled 60.5 14 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 46 d3bxda1 not modelled 59.6 24 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:MioX-like 47 c2huoA_ not modelled 59.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:inositol oxygenase; PDBTitle: crystal structure of mouse myo-inositol oxygenase in complex with2 substrate 48 d1f0ja_ not modelled 58.5 18 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 49 c2o8hA_ not modelled 57.3 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphodiesterase-10a; PDBTitle: crystal structure of the catalytic domain of rat2 phosphodiesterase 10a 50 d2h44a1 not modelled 55.5 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 51 c3qi4A_ not modelled 54.8 12 PDB header:hydrolase Chain: A: PDB Molecule:high affinity cgmp-specific 3',5'-cyclic phosphodiesterase PDBTitle: crystal structure of pde9a(q453e) in complex with ibmx 52 c3ibjB_ not modelled 53.2 13 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase; PDBTitle: x-ray structure of pde2a 53 d2ibna1 not modelled 51.9 28 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:MioX-like 54 c2ounA_ not modelled 51.2 12 PDB header:hydrolase Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic PDBTitle: crystal structure of pde10a2 in complex with amp 55 c2floA_ not modelled 49.0 9 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7 56 c1z1lA_ not modelled 48.7 14 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase; PDBTitle: the crystal structure of the phosphodiesterase 2a catalytic2 domain 57 c2k0nA_ not modelled 37.7 22 PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription PDBTitle: solution structure of yeast gal11p kix domain 58 c3rv0C_ not modelled 30.1 36 PDB header:rna binding protein Chain: C: PDB Molecule:k. polysporus dcr1; PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd 59 d1so2a_ not modelled 16.9 16 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 60 c3g3nA_ not modelled 15.2 12 PDB header:hydrolase Chain: A: PDB Molecule:high affinity camp-specific 3',5'-cyclic PDBTitle: pde7a catalytic domain in complex with 3-(2,6-2 difluorophenyl)-2-(methylthio)quinazolin-4(3h)-one 61 d1tbfa_ not modelled 14.3 12 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:PDEase 62 c3r84O_ not modelled 13.8 19 PDB header:transcription Chain: O: PDB Molecule:mediator of rna polymerase ii transcription subunit 11; PDBTitle: structure of the mediator head subcomplex med11/22 63 d2dlda1 not modelled 12.9 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 64 c3bjcA_ not modelled 12.2 11 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: crystal structure of the pde5a catalytic domain in complex2 with a novel inhibitor 65 c2wukD_ not modelled 12.0 10 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 66 d1j4aa1 not modelled 11.6 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 67 c3hi0B_ not modelled 11.2 13 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 68 d1ygya2 not modelled 10.0 16 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 69 c3ecmA_ not modelled 9.1 11 PDB header:hydrolase Chain: A: PDB Molecule:high affinity camp-specific and ibmx-insensitive PDBTitle: crystal structure of the unliganded pde8a catalytic domain 70 d1odfa_ not modelled 8.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 71 d1dxya2 not modelled 8.3 11 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 72 c1z65A_ not modelled 7.7 17 PDB header:unknown function Chain: A: PDB Molecule:prion-like protein doppel; PDBTitle: mouse doppel 1-30 peptide 73 c3rv1B_ not modelled 6.7 38 PDB header:rna binding protein Chain: B: PDB Molecule:k. polysporus dcr1; PDBTitle: crystal structure of the n-terminal and rnase iii domains of k.2 polysporus dcr1 e224q mutant 74 c2k4vA_ not modelled 5.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1076; PDBTitle: solution structure of uncharacterized protein pa1076 from2 pseudomonas aeruginosa. northeast structural genomics3 consortium (nesg) target pat3, ontario center for4 structural proteomics target pa1076 . 75 d1sc6a2 not modelled 5.8 13 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 76 c1zklA_ not modelled 5.6 12 PDB header:hydrolase Chain: A: PDB Molecule:high-affinity camp-specific 3',5'-cyclic PDBTitle: multiple determinants for inhibitor selectivity of cyclic2 nucleotide phosphodiesterases 77 d1mvfd_ not modelled 5.6 21 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 78 c2wdfA_ not modelled 5.3 27 PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0