Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	E	K	L	G	Q	H	Y	L	A	A	L	N	E	A	F	P	G	V	V	L	D	H	A	W	Q	T	K	D	Q	L	T	V	T	V	K	V	N	Y	L	P	E	V	V	E	F	L	Y	Y	K	Q	G	G	W	L	S	V	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	G	N	D	E	R	K	L	N	G	H	Y	A	V	Y	Y	V	L	S	M	E	K	G	T	K	C	W	I	T	V	R	V	E	V	D	A	N	K	P	E	Y	P	S	V	T	P	R	V	P	A	A	V	W	G	E	R	E	V	R	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	Y	G	L	I	P	V	G	L	P	D	E	R	R	L	V	L	P	D	D	W	P	D	E	L	Y	P	L	R	K	D	S	M	D	Y	R	Q	R	P	A	P	T	T	D	A	E	T	Y	E	F	I	N	E	L	G	D	K	K	N	N
Secondary structure
SS confidence
Disorder																																	?		?	?										?	?	?			?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	V	P	I	G	P	L	H	V	T	S	D	E	P	G	H	F	R	L	F	V	D	G	E	N	I	I	D	A	D	Y	R	L	F	Y	V	H	R	G	M	E	K	L	A	E	T	R	M	G	Y	N	E	V	T	F	L	S	D	R	V
Secondary structure
SS confidence
Disorder		?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		C	G	I	C	G	F	A	H	S	T	A	Y	T	T	S	V	E	N	A	M	G	I	Q	V	P	E	R	A	Q	M	I	R	A	I	L	L	E	V	E	R	L	H	S	H	L	L	N	L	G	L	A	C	H	F	T	G	F	D	S	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	M	Q	F	F	R	V	R	E	T	S	M	K	M	A	E	I	L	T	G	A	R	K	T	Y	G	L	N	L	I	G	G	I	R	R	D	L	L	K	D	D	M	I	Q	T	R	Q	L	A	Q	Q	M	R	R	E	V	Q	E	L	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	V	L	L	S	T	P	N	M	E	Q	R	T	V	G	I	G	R	L	D	P	E	I	A	R	D	F	S	N	V	G	P	M	V	R	A	S	G	H	A	R	D	T	R	A	D	H	P	F	V	G	Y	G	L	L	P	M	E	V	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		S	E	Q	G	C	D	V	I	S	R	L	K	V	R	I	N	E	V	Y	T	A	L	N	M	I	D	Y	G	L	D	N	L	P	G	G	P	L	M	V	E	G	F	T	Y	I	P	H	R	F	A	L	G	F	A	E	A	P	R	G	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		D	I	H	W	S	M	T	G	D	N	Q	K	L	Y	R	W	R	C	R	A	A	T	Y	A	N	W	P	T	L	R	Y	M	L	R	G	N	T	V	S	D	A	P	L	I	I	G	S	L	D	P	C	Y	S	C	T	D	R	M	T	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Sequence		V	D	V	R	K	K	K	S	K	V	V	P	Y	K	E	L	E	R	Y	S	I	E	R	K	N	S	P	L	K
Secondary structure
SS confidence
Disorder								?												?	?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fug chain 4 Region: 189 - 537 Aligned: 343 Modelled: 349 Confidence: 100.0% Identity: 31% PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2fug chain 4 domain 1 Region: 189 - 537 Aligned: 343 Modelled: 349 Confidence: 100.0% Identity: 31% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nqo4-like Phyre2 PDB 1e3d chain B Region: 182 - 537 Aligned: 352 Modelled: 356 Confidence: 100.0% Identity: 22% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 1yq9 chain H domain 1 Region: 181 - 537 Aligned: 353 Modelled: 357 Confidence: 100.0% Identity: 22% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 1frf chain L Region: 182 - 537 Aligned: 352 Modelled: 356 Confidence: 100.0% Identity: 21% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 1cc1 chain L Region: 180 - 537 Aligned: 353 Modelled: 358 Confidence: 100.0% Identity: 20% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 2wpn chain B Region: 178 - 537 Aligned: 354 Modelled: 360 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Phyre2 PDB 1h2a chain L Region: 182 - 537 Aligned: 352 Modelled: 356 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: L: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris Phyre2 PDB 3myr chain B Region: 182 - 537 Aligned: 351 Modelled: 356 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Phyre2 PDB 1wui chain L domain 1 Region: 182 - 537 Aligned: 350 Modelled: 356 Confidence: 100.0% Identity: 19% Fold: HydB/Nqo4-like Superfamily: HydB/Nqo4-like Family: Nickel-iron hydrogenase, large subunit Phyre2 PDB 2fug chain 5 domain 1 Region: 11 - 178 Aligned: 161 Modelled: 161 Confidence: 100.0% Identity: 25% Fold: Nqo5-like Superfamily: Nqo5-like Family: Nqo5-like Phyre2 PDB 3mcr chain A Region: 5 - 132 Aligned: 126 Modelled: 128 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh dehydrogenase, subunit c; PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution Phyre2 PDB 1v97 chain A domain 4 Region: 480 - 530 Aligned: 51 Modelled: 51 Confidence: 44.9% Identity: 8% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 PDB 2zjr chain G domain 1 Region: 528 - 545 Aligned: 18 Modelled: 18 Confidence: 43.8% Identity: 17% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 3cf5 chain G Region: 528 - 545 Aligned: 18 Modelled: 18 Confidence: 43.8% Identity: 17% PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans Phyre2 PDB 2dgy chain A Region: 460 - 500 Aligned: 40 Modelled: 41 Confidence: 33.8% Identity: 8% PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein Phyre2 PDB 2ftc chain H Region: 528 - 545 Aligned: 18 Modelled: 18 Confidence: 33.3% Identity: 17% PDB header:ribosome Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 3d5b chain N Region: 527 - 545 Aligned: 19 Modelled: 19 Confidence: 31.5% Identity: 26% PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. Phyre2 PDB 3bbo chain L Region: 528 - 545 Aligned: 18 Modelled: 18 Confidence: 31.5% Identity: 22% PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l13; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 1ffv chain C domain 1 Region: 468 - 530 Aligned: 62 Modelled: 63 Confidence: 29.5% Identity: 16% Fold: CO dehydrogenase flavoprotein C-domain-like Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like Family: CO dehydrogenase flavoprotein C-terminal domain-like Phyre2 1 c2fug4_ 2 d2fug41 3 d1e3db_ 4 d1yq9h1 5 d1frfl_ 6 d1cc1l_ 7 c2wpnB_ 8 c1h2aL_ 9 c3myrB_ 10 d1wuil1 11 d2fug51 12 c3mcrA_ 13 d1v97a4 14 d2zjrg1 15 c3cf5G_ 16 c2dgyA_ 17 c2ftcH_ 18 c3d5bN_ 19 c3bboL_ 20 d1ffvc1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2fug4_ 100.0 31 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 2 d2fug41 100.0 31 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nqo4-like 3 d1e3db_ 100.0 22 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 4 d1yq9h1 100.0 22 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 5 d1frfl_ 100.0 21 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 6 d1cc1l_ 100.0 20 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 7 c2wpnB_ 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 8 c1h2aL_ 100.0 19 PDB header:oxidoreductase Chain: L: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 9 c3myrB_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 10 d1wuil1 100.0 19 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 11 d2fug51 100.0 25 Fold:Nqo5-like Superfamily:Nqo5-like Family:Nqo5-like 12 c3mcrA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh dehydrogenase, subunit c; PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution 13 d1v97a4 44.9 8 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 14 d2zjrg1 43.8 17 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 15 c3cf5G_ 43.8 17 PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans 16 c2dgyA_ 33.8 8 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 17 c2ftcH_ 33.3 17 PDB header:ribosome Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 18 c3d5bN_ 31.5 26 PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 19 c3bboL_ 31.5 22 PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l13; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 20 d1ffvc1 29.5 16 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 21 d1knya2 not modelled 28.6 16 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain 22 d1r9da_ not modelled 28.1 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 23 d2j01n1 not modelled 24.2 26 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 24 d1ni2a3 not modelled 23.9 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 25 d1gg3a3 not modelled 23.6 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 26 d1u07a_ not modelled 23.0 14 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 27 d1ef1a3 not modelled 22.8 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 28 d2zpya3 not modelled 22.1 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 29 d2ntka1 not modelled 21.9 27 Fold:Ntn hydrolase-like Superfamily:Archaeal IMP cyclohydrolase PurO Family:Archaeal IMP cyclohydrolase PurO 30 c2grxC_ not modelled 21.6 8 PDB header:metal transport Chain: C: PDB Molecule:protein tonb; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 31 c2f3oB_ not modelled 21.4 14 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 32 c3kwlA_ not modelled 21.0 5 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori 33 c1ufiD_ not modelled 19.9 50 PDB header:dna binding protein Chain: D: PDB Molecule:major centromere autoantigen b; PDBTitle: crystal structure of the dimerization domain of human cenp-b 34 d1vqza1 not modelled 19.8 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 35 d1ufia_ not modelled 19.7 50 Fold:ROP-like Superfamily:Dimerisation domain of CENP-B Family:Dimerisation domain of CENP-B 36 d2gych1 not modelled 19.4 18 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 37 c2dnwA_ not modelled 19.4 11 PDB header:transport protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna 38 c1xx3A_ not modelled 18.1 6 PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd 39 c2ibpB_ not modelled 18.1 22 PDB header:transferase Chain: B: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum 40 c2oqkA_ not modelled 17.9 8 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 41 d2q22a1 not modelled 17.8 28 Fold:Ava3019-like Superfamily:Ava3019-like Family:Ava3019-like 42 d2gskb1 not modelled 16.9 8 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 43 d1d7qa_ not modelled 16.0 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 44 c3hrdC_ not modelled 15.8 12 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 45 d3c7bb2 not modelled 15.0 7 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 46 d1ghha_ not modelled 14.6 17 Fold:DNA damage-inducible protein DinI Superfamily:DNA damage-inducible protein DinI Family:DNA damage-inducible protein DinI 47 d1n62c1 not modelled 13.1 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 48 d1qxha_ not modelled 13.1 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 49 c1bl1A_ not modelled 13.0 54 PDB header:hormone receptor Chain: A: PDB Molecule:parathyroid hormone receptor; PDBTitle: pth receptor n-terminus fragment, nmr, 1 structure 50 d1yeya2 not modelled 13.0 10 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 51 c2kzxA_ not modelled 12.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116 52 d2cfua2 not modelled 12.5 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 53 c2cfuA_ not modelled 12.3 14 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 54 d1rtyb_ not modelled 12.2 15 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Cobalamin adenosyltransferase 55 c1wvtA_ not modelled 12.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st2180; PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii 56 c2w3zA_ not modelled 11.9 10 PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase 57 c3echC_ not modelled 11.5 36 PDB header:transcription, transcription regulation Chain: C: PDB Molecule:25-mer fragment of protein armr; PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr 58 d1es6a2 not modelled 11.4 36 Fold:EV matrix protein Superfamily:EV matrix protein Family:EV matrix protein 59 c2l9fA_ not modelled 11.4 15 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 60 c1es6A_ not modelled 11.4 36 PDB header:viral protein Chain: A: PDB Molecule:matrix protein vp40; PDBTitle: crystal structure of the matrix protein of ebola virus 61 c2kboA_ not modelled 11.3 50 PDB header:hydrolase Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g; PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g 62 c2fq2A_ not modelled 11.3 10 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum 63 d1h4ra3 not modelled 11.2 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:First domain of FERM 64 c2jisA_ not modelled 11.1 17 PDB header:lyase Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase; PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp. 65 c2zhzC_ not modelled 10.6 14 PDB header:transferase Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative; PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis 66 d1o98a1 not modelled 10.3 14 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 67 d1mixa2 not modelled 10.0 16 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 68 d1zdya1 not modelled 10.0 21 Fold:Antiparallel beta/alpha barrel (PT-barrel) Superfamily:Prenyltransferase-like Family:Prenyltransferase-like 69 c2yvzA_ not modelled 9.9 18 PDB header:transport protein Chain: A: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form 70 c2g40A_ not modelled 9.8 24 PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a duf162 family protein (dr_1909) from2 deinococcus radiodurans at 1.70 a resolution 71 d2g40a1 not modelled 9.8 24 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:YkgG-like 72 d1x2ga1 not modelled 9.8 11 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 73 d2hc5a1 not modelled 9.5 12 Fold:FlaG-like Superfamily:FlaG-like Family:FlaG-like 74 d1t3qc1 not modelled 9.5 13 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 75 d1gxma_ not modelled 9.4 31 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 76 c2ks1B_ not modelled 9.4 28 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 77 d1r6ta2 not modelled 9.4 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 78 d1jt8a_ not modelled 9.3 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 c1mbbA_ not modelled 9.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine PDBTitle: oxidoreductase 80 c2k9kA_ not modelled 9.0 13 PDB header:metal transport Chain: A: PDB Molecule:tonb2; PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum 81 c2kw0A_ not modelled 8.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 82 c2ip1A_ not modelled 8.9 31 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase 83 c1usdA_ not modelled 8.8 13 PDB header:signaling protein Chain: A: PDB Molecule:vasodilator-stimulated phosphoprotein; PDBTitle: human vasp tetramerisation domain l352m 84 c1hucC_ not modelled 8.7 18 PDB header:thiol protease Chain: C: PDB Molecule:cathepsin b; PDBTitle: the refined 2.15 angstroms x-ray crystal structure of human2 liver cathepsin b: the structural basis for its specificity 85 c3gdzA_ not modelled 8.6 12 PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of arginyl-trna synthetase from klebsiella2 pneumoniae subsp. pneumoniae 86 d1jrma_ not modelled 8.6 16 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 87 c2l4bA_ not modelled 8.6 16 PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a 88 d1jroa3 not modelled 8.6 17 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 89 c3jxeB_ not modelled 8.6 23 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp 90 c3a05A_ not modelled 8.5 31 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan 91 d1xhja_ not modelled 8.5 28 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 92 c2vgpD_ not modelled 8.4 19 PDB header:transferase Chain: D: PDB Molecule:inner centromere protein a; PDBTitle: crystal structure of aurora b kinase in complex with a2 aminothiazole inhibitor 93 c2kciA_ not modelled 8.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acyl carrier protein; PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141 94 d1ihra_ not modelled 8.3 8 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 95 c3hzrD_ not modelled 8.3 15 PDB header:ligase Chain: D: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica 96 c3g59A_ not modelled 8.3 12 PDB header:transferase Chain: A: PDB Molecule:fmn adenylyltransferase; PDBTitle: crystal structure of candida glabrata fmn2 adenylyltransferase in complex with atp 97 c2ouxB_ not modelled 8.0 16 PDB header:transport protein Chain: B: PDB Molecule:magnesium transporter; PDBTitle: crystal structure of the soluble part of a magnesium transporter 98 c3sc0A_ not modelled 8.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein; PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin 99 d1tifa_ not modelled 7.9 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0