Email l.a.kelley@imperial.ac.uk Description P42626 Date Thu Jan 5 12:01:57 GMT 2012 Unique Job ID 707af8fcb89e9c7b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2hp0A_ 98.5 14 PDB header:isomerase Chain: A: PDB Molecule:ids-epimerase; PDBTitle: crystal structure of iminodisuccinate epimerase 2 d1szqa_ 98.0 14 Fold:2-methylcitrate dehydratase PrpD Superfamily:2-methylcitrate dehydratase PrpD Family:2-methylcitrate dehydratase PrpD 3 c3u4gA_ 56.6 18 PDB header:transferase Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase; PDBTitle: the structure of cobt from pyrococcus horikoshii 4 c3nepX_ 53.0 18 PDB header:oxidoreductase Chain: X: PDB Molecule:malate dehydrogenase; PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber 5 d1v59a2 47.3 12 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 6 c2o2jA_ 38.7 27 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: mycobacterium tuberculosis tryptophan synthase beta chain2 dimer (apoform) 7 c2klzA_ 28.3 57 PDB header:hydrolase Chain: A: PDB Molecule:ataxin-3; PDBTitle: solution structure of the tandem uim domain of ataxin-3 complexed with2 ubiquitin 8 c1x1qA_ 23.0 23 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 9 d1o58a_ 20.3 23 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 10 c3l0zC_ 19.5 20 PDB header:transferase Chain: C: PDB Molecule:putative nicotinate-nucleotide-dimethylbenzimidazole PDBTitle: crystal structure of a putative nicotinate-nucleotide-2 dimethylbenzimidazole phosphoribosyltransferase from3 methanocaldococcus jannaschii dsm 2661 11 d2hsga1 18.8 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 12 c1m75B_ 18.5 39 PDB header:oxidoreductase Chain: B: PDB Molecule:3-hydroxyacyl-coa dehydrogenase; PDBTitle: crystal structure of the n208s mutant of l-3-hydroxyacyl-2 coa dehydrogenase in complex with nad and acetoacetyl-coa 13 d1efaa1 16.7 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 14 d1e3ja2 15.6 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 15 c3e49A_ 15.0 19 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold; PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution 16 d1v71a1 14.8 19 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 17 c2hldH_ 14.3 25 PDB header:hydrolase Chain: H: PDB Molecule:atp synthase delta chain, mitochondrial; PDBTitle: crystal structure of yeast mitochondrial f1-atpase 18 d1wfza_ 13.7 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 19 d1r4qa_ 12.2 5 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Shiga toxin, A-chain 20 d1fcja_ 12.2 27 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 21 d1nvmb1 not modelled 12.1 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 22 c3doaA_ not modelled 11.6 17 PDB header:protein binding Chain: A: PDB Molecule:fibrinogen binding protein; PDBTitle: the crystal structure of the fibrinogen binding protein from2 staphylococcus aureus 23 c3rfuC_ not modelled 11.2 13 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 24 c3co7C_ not modelled 10.9 29 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 25 d1j0aa_ not modelled 10.7 18 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 26 c3a58A_ not modelled 10.6 20 PDB header:protein transport/exocytosis Chain: A: PDB Molecule:exocyst complex component sec3; PDBTitle: crystal structure of sec3p - rho1p complex from2 saccharomyces cerevisiae 27 d3bpya1 not modelled 10.6 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 28 c3g73A_ not modelled 10.6 29 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 29 d1kq8a_ not modelled 10.5 43 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 30 c1kq8A_ not modelled 10.5 43 PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1; PDBTitle: solution structure of winged helix protein hfh-1 31 d2dx7a1 not modelled 10.5 23 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 32 d1tyza_ not modelled 10.5 11 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 33 c3c1zA_ not modelled 10.4 17 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 34 d1ve1a1 not modelled 10.2 26 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 35 d2ldxa1 not modelled 10.2 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 36 d2bjca1 not modelled 10.2 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 37 d1j6ua3 not modelled 10.0 20 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF 38 d2a07f1 not modelled 10.0 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 39 d2hfha_ not modelled 9.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 40 c1e17A_ not modelled 9.7 36 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 41 d1ijwc_ not modelled 9.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 42 d1kn1b_ not modelled 9.4 23 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 43 d1pgja2 not modelled 9.2 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 44 c3imoC_ not modelled 9.1 33 PDB header:unknown function Chain: C: PDB Molecule:integron cassette protein; PDBTitle: structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass14 45 d2vnud2 not modelled 8.9 44 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 46 d1wkva1 not modelled 8.8 11 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 47 c2okvC_ not modelled 8.7 9 PDB header:hydrolase Chain: C: PDB Molecule:probable d-tyrosyl-trna(tyr) deacylase 1; PDBTitle: c-myc dna unwinding element binding protein 48 d1dxla2 not modelled 8.7 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 49 d1k1xa3 not modelled 8.7 15 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:4-alpha-glucanotransferase, N-terminal domain 50 c3mogA_ not modelled 8.6 39 PDB header:oxidoreductase Chain: A: PDB Molecule:probable 3-hydroxybutyryl-coa dehydrogenase; PDBTitle: crystal structure of 3-hydroxybutyryl-coa dehydrogenase from2 escherichia coli k12 substr. mg1655 51 c3sqgF_ not modelled 8.6 26 PDB header:transferase Chain: F: PDB Molecule:methyl-coenzyme m reductase, gamma subunit; PDBTitle: crystal structure of a methyl-coenzyme m reductase purified from black2 sea mats 52 d2bhsa1 not modelled 8.4 28 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 53 d1hcra_ not modelled 8.3 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 54 d1b74a2 not modelled 8.3 19 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 55 d2f1ka2 not modelled 8.2 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 56 c3dt5A_ not modelled 8.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0924; PDBTitle: c_terminal domain of protein of unknown function af_0924 from2 archaeoglobus fulgidus. 57 d1j7ga_ not modelled 8.1 19 Fold:DTD-like Superfamily:DTD-like Family:DTD-like 58 d1f2da_ not modelled 7.9 14 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 59 d2gv8a2 not modelled 7.9 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 60 d1qpza1 not modelled 7.7 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 61 c2yqfA_ not modelled 7.7 35 PDB header:protein binding Chain: A: PDB Molecule:ankyrin-1; PDBTitle: solution structure of the death domain of ankyrin-1 62 c3kg4A_ not modelled 7.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from mannheimia2 succiniciproducens 63 d1gv4a2 not modelled 7.5 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 64 c2pqmA_ not modelled 7.4 27 PDB header:lyase Chain: A: PDB Molecule:cysteine synthase; PDBTitle: crystal structure of cysteine synthase (oass) from entamoeba2 histolytica at 1.86 a resolution 65 c1nvmB_ not modelled 7.4 24 PDB header:lyase/oxidoreductase Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating); PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate 66 d1iioa_ not modelled 7.3 28 Fold:EF Hand-like Superfamily:Hypothetical protein MTH865 Family:Hypothetical protein MTH865 67 d2c6ya1 not modelled 7.2 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 68 c2zskA_ not modelled 7.1 100 PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 69 c1i7mD_ not modelled 7.1 15 PDB header:lyase Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase beta chain; PDBTitle: human s-adenosylmethionine decarboxylase with covalently bound2 pyruvoyl group and complexed with 4-amidinoindan-1-one-2'-3 amidinohydrazone 70 c3j08A_ not modelled 7.0 13 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 71 c2vmlA_ not modelled 7.0 20 PDB header:photosynthesis Chain: A: PDB Molecule:phycocyanin alpha chain; PDBTitle: the monoclinic structure of phycocyanin from gloeobacter2 violaceus 72 d1dlja2 not modelled 6.9 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 73 d1jsca3 not modelled 6.9 17 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 74 c1dliA_ not modelled 6.9 25 PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: the first structure of udp-glucose dehydrogenase (udpgdh) reveals the2 catalytic residues necessary for the two-fold oxidation 75 d1d5va_ not modelled 6.9 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 76 c2jfzB_ not modelled 6.8 80 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor 77 c1p8cD_ not modelled 6.7 28 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima 78 c3d3kD_ not modelled 6.6 14 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 79 d7mdha1 not modelled 6.4 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 80 c2pwzG_ not modelled 6.4 22 PDB header:oxidoreductase Chain: G: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase 81 c2q2kA_ not modelled 6.4 24 PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein 82 d1dd3a1 not modelled 6.3 12 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 83 c2kdtA_ not modelled 6.2 21 PDB header:protein transport Chain: A: PDB Molecule:neuroendocrine convertase 1; PDBTitle: pc1/3 dcsg sorting domain structure in dpc 84 d1allb_ not modelled 6.2 19 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 85 c1o7dA_ not modelled 6.1 12 PDB header:hydrolase Chain: A: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 86 c3m9hB_ not modelled 6.1 44 PDB header:chaperone Chain: B: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain of the2 mycobacterium tuberculosis proteasomal atpase mpa 87 d1poia_ not modelled 6.0 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 88 d2nmla1 not modelled 6.0 8 Fold:ERH-like Superfamily:ERH-like Family:ERH-like 89 d3bvua3 not modelled 6.0 12 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:alpha-mannosidase 90 d1v8za1 not modelled 6.0 21 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 91 d1neka1 not modelled 6.0 9 Fold:Spectrin repeat-like Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 92 c3jvfC_ not modelled 6.0 44 PDB header:signaling protein / cytokine Chain: C: PDB Molecule:interleukin-17 receptor a; PDBTitle: crystal structure of an interleukin-17 receptor complex 93 c2jnhA_ not modelled 5.9 33 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 94 c1p5jA_ not modelled 5.9 21 PDB header:lyase Chain: A: PDB Molecule:l-serine dehydratase; PDBTitle: crystal structure analysis of human serine dehydratase 95 d1p5ja_ not modelled 5.9 21 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 96 d1ez4a1 not modelled 5.9 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 97 c2jfnA_ not modelled 5.9 80 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala 98 c1b74A_ not modelled 5.8 80 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 99 c3a3jA_ not modelled 5.8 16 PDB header:hydrolase Chain: A: PDB Molecule:pbp5; PDBTitle: crystal structures of penicillin binding protein 5 from2 haemophilus influenzae