Email l.a.kelley@imperial.ac.uk Description P11071 Date Thu Jan 5 11:32:28 GMT 2012 Unique Job ID 6c4c1230b88a96be

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3epsB_ 100.0 99 PDB header:transferase, hydrolase Chain: B: PDB Molecule:isocitrate dehydrogenase kinase/phosphatase; PDBTitle: the crystal structure of isocitrate dehydrogenase kinase/phosphatase2 from e. coli 2 c2an7A_ 60.7 33 PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard 3 d1o5ua_ 49.4 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 4 c3pcsB_ 47.3 35 PDB header:protein transport/transferase Chain: B: PDB Molecule:espg; PDBTitle: structure of espg-pak2 autoinhibitory ialpha3 helix complex 5 c3es4B_ 46.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 6 c3myxA_ 40.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 7 c3rmiA_ 39.2 16 PDB header:isomerase Chain: A: PDB Molecule:chorismate mutase protein; PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate 8 c3hm5A_ 38.0 36 PDB header:transcription Chain: A: PDB Molecule:dna methyltransferase 1-associated protein 1; PDBTitle: sant domain of human dna methyltransferase 1 associated2 protein 1 9 c3hzpA_ 36.5 53 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution 10 c1nvpB_ 35.0 23 PDB header:transcription/dna Chain: B: PDB Molecule:transcription initiation factor iia alpha chain; PDBTitle: human tfiia/tbp/dna complex 11 d1nvpb_ 35.0 23 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 12 d1nh2b_ 34.3 22 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 13 d1dwka2 32.7 19 Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain 14 d2pyta1 30.1 45 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 15 d1oe4a_ 29.8 17 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 16 c3ff6D_ 27.7 28 PDB header:ligase Chain: D: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: human acc2 ct domain with cp-640186 17 c2wk1A_ 26.0 26 PDB header:transferase Chain: A: PDB Molecule:novp; PDBTitle: structure of the o-methyltransferase novp 18 c2b3fD_ 26.0 14 PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose 19 d1zl8a1 25.2 29 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 20 c3fewX_ 24.2 42 PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain 21 c3ic7A_ not modelled 22.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron 22 c2w7yA_ not modelled 22.7 22 PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. 23 c2og5A_ not modelled 22.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 24 c3kpaB_ not modelled 22.2 26 PDB header:ligase Chain: B: PDB Molecule:probable ubiquitin fold modifier conjugating enzyme; PDBTitle: ubiquitin fold modifier conjugating enzyme from leishmania major2 (probable) 25 d1f3va_ not modelled 21.5 19 Fold:Ferredoxin-like Superfamily:TRADD, N-terminal domain Family:TRADD, N-terminal domain 26 c3ckxA_ not modelled 21.1 19 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase 24; PDBTitle: crystal structure of sterile 20-like kinase 3 (mst3, stk24)2 in complex with staurosporine 27 c3nquA_ not modelled 20.8 16 PDB header:dna binding protein Chain: A: PDB Molecule:histone h3-like centromeric protein a; PDBTitle: crystal structure of partially trypsinized (cenp-a/h4)2 heterotetramer 28 d2gtvx1 not modelled 20.6 10 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:monomeric chorismate mutase 29 c1rm1C_ not modelled 20.3 23 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex 30 c2z8fB_ not modelled 20.0 19 PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose 31 c3i3vC_ not modelled 19.8 14 PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor 32 c2l0rA_ not modelled 19.4 21 PDB header:hydrolase,toxin Chain: A: PDB Molecule:lethal factor; PDBTitle: conformational dynamics of the anthrax lethal factor catalytic center 33 d1ppjw_ not modelled 18.8 7 Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 34 c2hjvB_ not modelled 18.7 14 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase dbpa; PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein 35 c3koxA_ not modelled 18.1 50 PDB header:metal binding protein Chain: A: PDB Molecule:d-ornithine aminomutase e component; PDBTitle: crystal structure of ornithine 4,5 aminomutase in complex with 2,4-2 diaminobutyrate (anaerobic) 36 c3lj4i_ not modelled 17.3 20 PDB header:viral protein Chain: I: PDB Molecule:portal protein; PDBTitle: bacteriophage p22 portal protein bound to middle tail factor gp4. this2 file contain the first biological assembly 37 d1p3ie_ not modelled 17.3 13 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 38 d1miua1 not modelled 17.2 33 Fold:BRCA2 helical domain Superfamily:BRCA2 helical domain Family:BRCA2 helical domain 39 c2iv1J_ not modelled 16.7 19 PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase 40 d1ckma2 not modelled 16.6 23 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:mRNA capping enzyme 41 d2ihoa2 not modelled 16.4 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:MOA C-terminal domain-like 42 d2ff4a2 not modelled 16.2 5 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:BTAD-like 43 c3bcwB_ not modelled 16.1 31 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 44 d1pc2a_ not modelled 15.5 22 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 45 d1t5ia_ not modelled 15.3 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 46 c3oqhB_ not modelled 15.2 23 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein yvmc; PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic 47 c2dnrA_ not modelled 15.2 35 PDB header:rna binding protein Chain: A: PDB Molecule:synaptojanin-1; PDBTitle: solution structure of rna binding domain in synaptojanin 1 48 d2h9ec1 not modelled 15.1 33 Fold:Serine protease inhibitors Superfamily:Serine protease inhibitors Family:ATI-like 49 d1mvfd_ not modelled 14.5 21 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 50 c3ls1A_ not modelled 14.3 15 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 51 c2ihoA_ not modelled 14.3 26 PDB header:sugar binding protein Chain: A: PDB Molecule:lectin; PDBTitle: crystal structure of moa, a lectin from the mushroom marasmius oreades2 in complex with the trisaccharide gal(1,3)gal(1,4)glcnac 52 c2a8vA_ not modelled 14.1 24 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 53 d2e29a1 not modelled 13.8 38 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:GUCT domain 54 c2vwiC_ not modelled 13.6 14 PDB header:transferase Chain: C: PDB Molecule:serine/threonine-protein kinase osr1; PDBTitle: structure of the osr1 kinase, a hypertension drug target 55 d1a62a2 not modelled 13.4 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 56 d2enda_ not modelled 13.2 15 Fold:T4 endonuclease V Superfamily:T4 endonuclease V Family:T4 endonuclease V 57 c2qbvA_ not modelled 13.1 20 PDB header:isomerase Chain: A: PDB Molecule:chorismate mutase; PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis 58 c3dkqB_ not modelled 12.9 22 PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution 59 c2q6tB_ not modelled 12.9 10 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 60 d1k28d2 not modelled 12.9 36 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 61 d1ht6a2 not modelled 12.8 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 62 c1yt8A_ not modelled 12.6 35 PDB header:transferase Chain: A: PDB Molecule:thiosulfate sulfurtransferase; PDBTitle: crystal structure of thiosulfate sulfurtransferase from pseudomonas2 aeruginosa 63 c3fgrA_ not modelled 12.6 22 PDB header:hydrolase Chain: A: PDB Molecule:putative phospholipase b-like 2 28 kda form; PDBTitle: two chain form of the 66.3 kda protein at 1.8 angstroem 64 d1z84a1 not modelled 12.5 26 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 65 c3qufB_ not modelled 12.4 28 PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 66 c3iz5G_ not modelled 12.3 38 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 67 c1tqmA_ not modelled 12.3 13 PDB header:ribosome Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a. fulgidus rio2 serine protein kinase bound to2 amppnp 68 d2fp1a1 not modelled 12.0 8 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Secreted chorismate mutase-like 69 d2d8da1 not modelled 11.9 12 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Dimeric chorismate mutase 70 d1t56a2 not modelled 11.9 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 71 d3dwya1 not modelled 11.8 9 Fold:Bromodomain-like Superfamily:Bromodomain Family:Bromodomain 72 c2gbbA_ not modelled 11.7 8 PDB header:isomerase Chain: A: PDB Molecule:putative chorismate mutase; PDBTitle: crystal structure of secreted chorismate mutase from2 yersinia pestis 73 d1ecma_ not modelled 11.5 9 Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Dimeric chorismate mutase 74 c2xvtC_ not modelled 11.5 15 PDB header:membrane protein Chain: C: PDB Molecule:receptor activity-modifying protein 2; PDBTitle: structure of the extracellular domain of human ramp2 75 d2ok5a4 not modelled 11.4 27 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 76 c3olhA_ not modelled 11.3 22 PDB header:transferase Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase; PDBTitle: human 3-mercaptopyruvate sulfurtransferase 77 d1j03a_ not modelled 11.1 23 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Steroid-binding domain 78 d1nz6a_ not modelled 11.1 22 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 79 c2i58B_ not modelled 11.0 25 PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose 80 d1cz5a1 not modelled 10.9 12 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 81 c1x58A_ not modelled 10.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein 4930532d21rik; PDBTitle: solution structures of the myb-like dna binding domain of2 4930532d21rik protein 82 d1y74a1 not modelled 10.8 19 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 83 c3r9jD_ not modelled 10.7 12 PDB header:cell cycle,hydrolase/cell cycle Chain: D: PDB Molecule:cell division topological specificity factor; PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex 84 d1njha_ not modelled 10.7 20 Fold:Hypothetical protein YojF Superfamily:Hypothetical protein YojF Family:Hypothetical protein YojF 85 d1w07a2 not modelled 10.7 2 Fold:Bromodomain-like Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like Family:acyl-CoA oxidase C-terminal domains 86 c1qrjB_ not modelled 10.7 9 PDB header:viral protein Chain: B: PDB Molecule:htlv-i capsid protein; PDBTitle: solution structure of htlv-i capsid protein 87 c2r5uD_ not modelled 10.6 17 PDB header:hydrolase Chain: D: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the n-terminal domain of dnab helicase from2 mycobacterium tuberculosis 88 c3kvpB_ not modelled 10.6 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ymzc; PDBTitle: crystal structure of uncharacterized protein ymzc precursor2 from bacillus subtilis, northeast structural genomics3 consortium target sr378a 89 d1f35a_ not modelled 10.6 21 Fold:Olfactory marker protein Superfamily:Olfactory marker protein Family:Olfactory marker protein 90 d1wb8a1 not modelled 10.5 15 Fold:Long alpha-hairpin Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain 91 c2uvgA_ not modelled 10.4 19 PDB header:sugar-binding protein Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica 92 d1hv8a2 not modelled 10.4 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 93 d1xr7a_ not modelled 10.3 14 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 94 d1jwea_ not modelled 10.3 13 Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase 95 d2in1a1 not modelled 10.3 33 Fold:UBC-like Superfamily:UBC-like Family:UFC1-like 96 d1ufwa_ not modelled 10.1 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 97 c3i1lC_ not modelled 10.1 25 PDB header:hydrolase Chain: C: PDB Molecule:hemagglutinin-esterase protein; PDBTitle: structure of porcine torovirus hemagglutinin-esterase in complex with2 its receptor 98 c1fi8E_ not modelled 9.9 36 PDB header:hydrolase/hydrolase inhibitor Chain: E: PDB Molecule:ecotin; PDBTitle: rat granzyme b [n66q] complexed to ecotin [81-84 iepd] 99 d1ub4c_ not modelled 9.9 15 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote