Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	K	T	T	L	S	E	E	D	Q	A	L	F	R	Q	L	M	A	G	T	R	K	I	K	Q	D	T	I	V	H	R	P	Q	R	K	K	I	S	E	V	P	V	K	R	L	I	Q	E	Q	A	D	A	S	H	Y	F	S	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	F	Q	P	L	L	N	T	E	G	P	V	K	Y	V	R	P	D	V	S	H	F	E	A	K	K	L	R	R	G	D	Y	S	P	E	L	F	L	D	L	H	G	L	T	Q	L	Q	A	K	Q	E	L	G	A	L	I	A	A	C	R
Secondary structure
SS confidence
Disorder					?	?	?				?						?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	E	H	V	F	C	A	C	V	M	H	G	H	G	K	H	I	L	K	Q	Q	T	P	L	W	L	A	Q	H	P	H	V	M	A	F	H	Q	A	P	K	E	Y	G	G	D	A	A	L	L	V	L	I	E	V	E	E	W	L	P	P
Secondary structure
SS confidence
Disorder																																																									?	?	?	?	?
Disorder confidence
		.	.	.
Sequence		E	L	P
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qd7 chain X Region: 50 - 174 Aligned: 125 Modelled: 125 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli Phyre2 PDB 2zqe chain A Region: 97 - 173 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 27% PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 Phyre2 PDB 2d9i chain A domain 1 Region: 95 - 173 Aligned: 72 Modelled: 79 Confidence: 99.6% Identity: 25% Fold: IF3-like Superfamily: SMR domain-like Family: Smr domain Phyre2 PDB 2vkc chain A Region: 81 - 173 Aligned: 86 Modelled: 93 Confidence: 99.5% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain Phyre2 PDB 3no4 chain A Region: 102 - 150 Aligned: 49 Modelled: 49 Confidence: 52.8% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution Phyre2 PDB 1jdq chain A Region: 90 - 174 Aligned: 76 Modelled: 85 Confidence: 46.9% Identity: 14% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 2q2e chain A Region: 112 - 161 Aligned: 49 Modelled: 50 Confidence: 44.0% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:type ii dna topoisomerase vi subunit a; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei Phyre2 PDB 3lub chain E Region: 102 - 155 Aligned: 54 Modelled: 54 Confidence: 43.9% Identity: 11% PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution Phyre2 PDB 1dcj chain A Region: 93 - 174 Aligned: 72 Modelled: 82 Confidence: 41.8% Identity: 15% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 2fmo chain A Region: 109 - 132 Aligned: 24 Modelled: 24 Confidence: 39.3% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate reductase; PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase Phyre2 PDB 1d3y chain A Region: 110 - 161 Aligned: 51 Modelled: 52 Confidence: 37.9% Identity: 14% Fold: DNA topoisomerase IV, alpha subunit Superfamily: DNA topoisomerase IV, alpha subunit Family: DNA topoisomerase IV, alpha subunit Phyre2 PDB 1pyy chain A domain 2 Region: 99 - 114 Aligned: 16 Modelled: 16 Confidence: 34.1% Identity: 25% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 2odk chain A domain 1 Region: 100 - 138 Aligned: 38 Modelled: 38 Confidence: 32.5% Identity: 18% Fold: YefM-like Superfamily: YefM-like Family: YefM-like Phyre2 PDB 2zbk chain A Region: 110 - 161 Aligned: 51 Modelled: 52 Confidence: 32.5% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:type ii dna topoisomerase vi subunit a; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Phyre2 PDB 1b5t chain A Region: 109 - 132 Aligned: 24 Modelled: 24 Confidence: 30.8% Identity: 13% Fold: TIM beta/alpha-barrel Superfamily: FAD-linked oxidoreductase Family: Methylenetetrahydrofolate reductase Phyre2 PDB 2odk chain D Region: 101 - 138 Aligned: 37 Modelled: 38 Confidence: 29.7% Identity: 19% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea Phyre2 PDB 1k25 chain A domain 2 Region: 99 - 114 Aligned: 16 Modelled: 16 Confidence: 28.9% Identity: 19% Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain Phyre2 PDB 3ouv chain A Region: 99 - 114 Aligned: 16 Modelled: 13 Confidence: 28.3% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase; PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb Phyre2 PDB 1v7z chain A Region: 103 - 145 Aligned: 43 Modelled: 43 Confidence: 26.6% Identity: 16% Fold: Creatininase Superfamily: Creatininase Family: Creatininase Phyre2 PDB 3k5w chain A Region: 105 - 162 Aligned: 53 Modelled: 57 Confidence: 25.6% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori Phyre2 1 c3qd7X_ 2 c2zqeA_ 3 d2d9ia1 4 c2vkcA_ 5 c3no4A_ 6 d1jdqa_ 7 c2q2eA_ 8 c3lubE_ 9 d1dcja_ 10 c2fmoA_ 11 d1d3ya_ 12 d1pyya2 13 d2odka1 14 c2zbkA_ 15 d1b5ta_ 16 c2odkD_ 17 d1k25a2 18 c3ouvA_ 19 d1v7za_ 20 c3k5wA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qd7X_ 100.0 21 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 2 c2zqeA_ 99.9 27 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 3 d2d9ia1 99.6 25 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 4 c2vkcA_ 99.5 24 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 5 c3no4A_ 52.8 16 PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution 6 d1jdqa_ 46.9 14 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 7 c2q2eA_ 44.0 14 PDB header:isomerase Chain: A: PDB Molecule:type ii dna topoisomerase vi subunit a; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei 8 c3lubE_ 43.9 11 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 9 d1dcja_ 41.8 15 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 10 c2fmoA_ 39.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate reductase; PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase 11 d1d3ya_ 37.9 14 Fold:DNA topoisomerase IV, alpha subunit Superfamily:DNA topoisomerase IV, alpha subunit Family:DNA topoisomerase IV, alpha subunit 12 d1pyya2 34.1 25 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 13 d2odka1 32.5 18 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 14 c2zbkA_ 32.5 12 PDB header:isomerase Chain: A: PDB Molecule:type ii dna topoisomerase vi subunit a; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms 15 d1b5ta_ 30.8 13 Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase 16 c2odkD_ 29.7 19 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea 17 d1k25a2 28.9 19 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 18 c3ouvA_ 28.3 25 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase; PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb 19 d1v7za_ 26.6 16 Fold:Creatininase Superfamily:Creatininase Family:Creatininase 20 c3k5wA_ 25.6 15 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 21 c3eozB_ not modelled 25.1 12 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoglycerate mutase; PDBTitle: crystal structure of phosphoglycerate mutase from plasmodium2 falciparum, pfd0660w 22 d2c2la2 not modelled 23.0 11 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 23 d1rp5a2 not modelled 22.5 29 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 24 c3cgxA_ not modelled 21.8 9 PDB header:transferase Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase; PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution 25 c2q0xA_ not modelled 20.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: alpha/beta hydrolase fold protein of unknown function 26 d2a6qb1 not modelled 18.7 17 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 27 c3d3kD_ not modelled 18.5 11 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 28 c3e0jF_ not modelled 18.0 26 PDB header:transferase Chain: F: PDB Molecule:dna polymerase subunit delta-3; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 29 c1x0lB_ not modelled 16.9 6 PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus 30 d1v93a_ not modelled 16.7 15 Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase 31 c3g5oA_ not modelled 14.9 17 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 32 d1g8fa3 not modelled 14.8 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 33 c1tyoA_ not modelled 14.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp 34 c3hryA_ not modelled 13.9 9 PDB header:antitoxin Chain: A: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered 35 c3pzqA_ not modelled 13.9 16 PDB header:hydrolase Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol 36 d1pava_ not modelled 13.6 12 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 37 c2zc3F_ not modelled 12.6 13 PDB header:biosynthetic protein Chain: F: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp 2x) acyl-enzyme complex2 (biapenem) from streptococcus pneumoniae 38 c2g7zB_ not modelled 12.5 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein spy1493; PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids 39 c2kueA_ not modelled 11.9 38 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase pknb; PDBTitle: nmr structure of the pasta domain 2 and 3 of mycobacterium2 tuberculosis of pknb 40 d2c0ha1 not modelled 11.9 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 41 c3odmE_ not modelled 11.6 12 PDB header:lyase Chain: E: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: archaeal-type phosphoenolpyruvate carboxylase 42 c2ns6A_ not modelled 11.3 20 PDB header:hydrolase Chain: A: PDB Molecule:mobilization protein a; PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162 43 c2kudA_ not modelled 11.2 25 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase pknb; PDBTitle: nmr structure of the pasta domain 1 and 2 of mycobacterium2 tuberculosis of pknb 44 d2obba1 not modelled 11.2 8 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 45 c3icgD_ not modelled 11.2 6 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 46 d3pgma_ not modelled 11.1 11 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 47 d2i5ea1 not modelled 11.0 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MM2497-like 48 c3fcyB_ not modelled 10.6 18 PDB header:hydrolase Chain: B: PDB Molecule:xylan esterase 1; PDBTitle: crystal structure of acetyl xylan esterase 1 from2 thermoanaerobacterium sp. jw/sl ys485 49 c3u7vA_ not modelled 10.5 21 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15. 50 c3lmaC_ not modelled 10.4 12 PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. 51 c2f42A_ not modelled 10.4 13 PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein 52 d2vo9a1 not modelled 10.0 19 Fold:Hedgehog/DD-peptidase Superfamily:Hedgehog/DD-peptidase Family:VanY-like 53 c3hs2H_ not modelled 9.9 9 PDB header:antitoxin Chain: H: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group 54 c3ir3B_ not modelled 9.6 17 PDB header:lyase Chain: B: PDB Molecule:3-hydroxyacyl-thioester dehydratase 2; PDBTitle: crystal structure of human 3-hydroxyacyl-thioester dehydratase 22 (htd2) 55 c3l80A_ not modelled 9.5 20 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c; PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159 56 d1ceoa_ not modelled 9.3 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 57 c3ndyA_ not modelled 9.3 4 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase d; PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 58 d1u7pa_ not modelled 9.3 23 Fold:HAD-like Superfamily:HAD-like Family:Magnesium-dependent phosphatase-1, Mdp1 59 c2qniA_ not modelled 9.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu0299; PDBTitle: crystal structure of uncharacterized protein atu0299 60 d1qhfa_ not modelled 9.1 14 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 61 d1vjza_ not modelled 9.1 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 62 c1cirA_ not modelled 9.0 29 PDB header:serine protease inhibitor Chain: A: PDB Molecule:chymotrypsin inhibitor 2; PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)] 63 d1gs5a_ not modelled 8.9 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 64 d1riia_ not modelled 8.9 14 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 65 c2y9xG_ not modelled 8.7 19 PDB header:oxidoreductase Chain: G: PDB Molecule:lectin-like fold protein; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone 66 c3fpvC_ not modelled 8.6 17 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 67 d1yh5a1 not modelled 8.6 19 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 68 c2xt0A_ not modelled 8.5 16 PDB header:hydrolase Chain: A: PDB Molecule:haloalkane dehalogenase; PDBTitle: dehalogenase dppa from plesiocystis pacifica sir-i 69 c3hz7A_ not modelled 8.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 70 d1hkha_ not modelled 8.4 28 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase 71 d2csba1 not modelled 8.3 28 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 72 d2iw0a1 not modelled 8.3 13 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 73 c2c2lD_ not modelled 8.1 11 PDB header:chaperone Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein; PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase 74 d1uf3a_ not modelled 8.0 11 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 75 c3ll4B_ not modelled 7.9 19 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ykr043c; PDBTitle: structure of the h13a mutant of ykr043c in complex with fructose-1,6-2 bisphosphate 76 d2g5gx1 not modelled 7.7 19 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:ChaN-like 77 d2a2la1 not modelled 7.7 17 Fold:Profilin-like Superfamily:GlcG-like Family:GlcG-like 78 d1xpja_ not modelled 7.6 10 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 79 c3i31A_ not modelled 7.6 10 PDB header:rna binding protein,hydrolase Chain: A: PDB Molecule:heat resistant rna dependent atpase; PDBTitle: hera helicase rna binding domain is an rrm fold 80 c2vx2D_ not modelled 7.6 10 PDB header:isomerase Chain: D: PDB Molecule:enoyl-coa hydratase domain-containing protein 3; PDBTitle: crystal structure of human enoyl coenzyme a hydratase2 domain-containing protein 3 (echdc3) 81 c3fdjA_ not modelled 7.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: the structure of a degv family protein from eubacterium eligens. 82 c1yjxD_ not modelled 7.5 12 PDB header:isomerase, hydrolase Chain: D: PDB Molecule:phosphoglycerate mutase 1; PDBTitle: crystal structure of human b type phosphoglycerate mutase 83 c3lupA_ not modelled 7.5 15 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae 84 d2bi0a1 not modelled 7.4 20 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 85 c3mmwB_ not modelled 7.4 13 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima 86 c3d40A_ not modelled 7.3 14 PDB header:transferase Chain: A: PDB Molecule:foma protein; PDBTitle: crystal structure of fosfomycin resistance kinase foma from2 streptomyces wedmorensis complexed with diphosphate 87 d2pb1a1 not modelled 7.1 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 88 d2ax3a2 not modelled 7.1 13 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 89 d1r57a_ not modelled 7.1 14 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 90 c3czcA_ not modelled 7.0 22 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 91 c3l6wB_ not modelled 7.0 26 PDB header:oxygen binding Chain: B: PDB Molecule:hemocyanin 1; PDBTitle: structure of the collar functional unit (klh1-h) of keyhole2 limpet hemocyanin 92 d1uuqa_ not modelled 6.8 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 93 c1uz4A_ not modelled 6.8 12 PDB header:hydrolase Chain: A: PDB Molecule:man5a; PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis 94 d1e58a_ not modelled 6.8 10 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 95 c1vkrA_ not modelled 6.6 14 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 96 d1vkra_ not modelled 6.6 14 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 97 d1wz8a1 not modelled 6.5 13 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Crotonase-like 98 c3t1iC_ not modelled 6.5 16 PDB header:hydrolase Chain: C: PDB Molecule:double-strand break repair protein mre11a; PDBTitle: crystal structure of human mre11: understanding tumorigenic mutations 99 d2a6qa1 not modelled 6.4 17 Fold:YefM-like Superfamily:YefM-like Family:YefM-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0