Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	N	R	L	L	I	L	S	L	L	V	S	V	P	A	F	A	W	Q	P	Q	T	G	D	I	I	F	Q	I	S	R	S	S	Q	S	K	A	I	Q	L	A	T	H	T	D	Y	S	H	T	G	M	L	V	I	R	N	K	K	P
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	V	F	E	A	V	G	P	V	K	Y	T	P	L	K	Q	W	I	A	H	G	E	K	G	K	Y	V	V	R	R	V	E	G	G	L	S	V	E	Q	Q	Q	K	L	A	Q	T	A	K	R	Y	L	G	K	P	Y	D	F	S	F	S
Secondary structure
SS confidence
Disorder																																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	S	D	D	R	Q	Y	C	S	E	V	V	W	K	V	Y	Q	N	A	L	G	M	R	V	G	E	Q	Q	K	L	K	E	F	D	L	S	S	P	Q	V	Q	A	K	L	K	E	R	Y	G	K	N	I	P	L	E	E	T	V	V	S
Secondary structure
SS confidence
Disorder																																?																			?			?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Sequence		P	Q	A	V	F	D	A	P	Q	L	T	T	V	A	K	E	W	P	L	F	S	W
Secondary structure
SS confidence
Disorder																				?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2if6 chain A domain 1 Region: 19 - 200 Aligned: 182 Modelled: 182 Confidence: 100.0% Identity: 98% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: YiiX-like Phyre2 PDB 3kw0 chain D Region: 15 - 193 Aligned: 144 Modelled: 146 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution Phyre2 PDB 2p1g chain A Region: 20 - 91 Aligned: 63 Modelled: 63 Confidence: 98.1% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis Phyre2 PDB 2k1g chain A Region: 95 - 147 Aligned: 52 Modelled: 53 Confidence: 97.8% Identity: 15% PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 Phyre2 PDB 3npf chain B Region: 20 - 98 Aligned: 70 Modelled: 78 Confidence: 97.8% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution Phyre2 PDB 2fg0 chain B Region: 15 - 91 Aligned: 63 Modelled: 77 Confidence: 97.6% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution Phyre2 PDB 3gt2 chain A Region: 97 - 147 Aligned: 50 Modelled: 51 Confidence: 97.5% Identity: 12% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c Phyre2 PDB 3h41 chain A Region: 20 - 91 Aligned: 58 Modelled: 70 Confidence: 97.5% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution Phyre2 PDB 2evr chain A domain 2 Region: 18 - 98 Aligned: 66 Modelled: 81 Confidence: 97.5% Identity: 20% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: NlpC/P60 Phyre2 PDB 2kyt chain A Region: 13 - 133 Aligned: 97 Modelled: 108 Confidence: 97.5% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain Phyre2 PDB 2xiv chain A Region: 97 - 147 Aligned: 50 Modelled: 51 Confidence: 97.2% Identity: 16% PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis Phyre2 PDB 3pbi chain A Region: 97 - 147 Aligned: 50 Modelled: 51 Confidence: 97.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution Phyre2 PDB 3i86 chain A Region: 97 - 147 Aligned: 50 Modelled: 51 Confidence: 97.2% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 Phyre2 PDB 2im9 chain A domain 1 Region: 16 - 96 Aligned: 80 Modelled: 81 Confidence: 97.1% Identity: 20% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Lpg0564-like Phyre2 PDB 2im9 chain A Region: 16 - 96 Aligned: 80 Modelled: 81 Confidence: 97.1% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 Phyre2 PDB 3m1u chain B Region: 100 - 144 Aligned: 42 Modelled: 45 Confidence: 94.3% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution Phyre2 PDB 2io8 chain A domain 2 Region: 21 - 66 Aligned: 37 Modelled: 46 Confidence: 92.8% Identity: 16% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: CHAP domain Phyre2 PDB 2ioa chain A Region: 21 - 64 Aligned: 35 Modelled: 44 Confidence: 80.2% Identity: 17% PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor Phyre2 PDB 2k3a chain A Region: 20 - 66 Aligned: 34 Modelled: 34 Confidence: 77.4% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 Phyre2 PDB 2vpm chain B Region: 21 - 64 Aligned: 34 Modelled: 44 Confidence: 77.2% Identity: 21% PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase Phyre2 1 d2if6a1 2 c3kw0D_ 3 c2p1gA_ 4 c2k1gA_ 5 c3npfB_ 6 c2fg0B_ 7 c3gt2A_ 8 c3h41A_ 9 d2evra2 10 c2kytA_ 11 c2xivA_ 12 c3pbiA_ 13 c3i86A_ 14 d2im9a1 15 c2im9A_ 16 c3m1uB_ 17 d2io8a2 18 c2ioaA_ 19 c2k3aA_ 20 c2vpmB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2if6a1 100.0 98 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 2 c3kw0D_ 100.0 22 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 3 c2p1gA_ 98.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 4 c2k1gA_ 97.8 15 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 5 c3npfB_ 97.8 17 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 6 c2fg0B_ 97.6 24 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 7 c3gt2A_ 97.5 12 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 8 c3h41A_ 97.5 22 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 9 d2evra2 97.5 20 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 10 c2kytA_ 97.5 23 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 11 c2xivA_ 97.2 16 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 12 c3pbiA_ 97.2 18 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 13 c3i86A_ 97.2 16 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 14 d2im9a1 97.1 20 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like 15 c2im9A_ 97.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 16 c3m1uB_ 94.3 19 PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution 17 d2io8a2 92.8 16 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 18 c2ioaA_ 80.2 17 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 19 c2k3aA_ 77.4 24 PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 20 c2vpmB_ 77.2 21 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 21 d1u5tb1 not modelled 33.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 22 d1wh7a_ not modelled 23.5 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 23 c3mvnA_ not modelled 23.0 20 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp 24 d1wfza_ not modelled 20.6 19 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 25 d1zj8a1 not modelled 19.9 27 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 26 c1wypA_ not modelled 18.7 15 PDB header:structural protein Chain: A: PDB Molecule:calponin 1; PDBTitle: solution structure of the ch domain of human calponin 1 27 c2z7eB_ not modelled 17.9 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 28 d1jala2 not modelled 13.6 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 29 d1vbga2 not modelled 13.3 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 30 d1ni3a2 not modelled 13.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 31 d1knwa1 not modelled 12.9 7 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 32 d1vcta2 not modelled 12.7 9 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 33 d1kbla2 not modelled 12.1 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 34 d1e8ca2 not modelled 11.8 14 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 35 c3a56B_ not modelled 11.6 14 PDB header:hydrolase Chain: B: PDB Molecule:protein-glutaminase; PDBTitle: crystal structure of pro- protein-glutaminase 36 c3eatX_ not modelled 11.5 13 PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa 37 d2ptza1 not modelled 11.1 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 38 c2wbqA_ not modelled 10.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 39 d2gdwa1 not modelled 10.6 21 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Peptidyl carrier domain 40 c3da5A_ not modelled 10.5 14 PDB header:rna binding protein Chain: A: PDB Molecule:argonaute; PDBTitle: crystal structure of piwi/argonaute/zwille(paz) domain from2 thermococcus thioreducens 41 d1wpna_ not modelled 10.3 10 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 42 d1vk3a3 not modelled 10.2 15 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 43 c1wynA_ not modelled 9.8 16 PDB header:structural protein Chain: A: PDB Molecule:calponin-2; PDBTitle: solution structure of the ch domain of human calponin-2 44 d1k20a_ not modelled 9.6 15 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 45 d2jfga2 not modelled 9.5 19 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 46 d1h6za2 not modelled 9.4 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 47 d1ds1a_ not modelled 9.0 22 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 48 c3pvjB_ not modelled 8.9 27 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 49 c2og5A_ not modelled 8.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 50 d1twia1 not modelled 8.9 9 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 51 c2cmpA_ not modelled 8.3 19 PDB header:terminase Chain: A: PDB Molecule:terminase small subunit; PDBTitle: crystal structure of the dna binding domain of g1p small2 terminase subunit from bacteriophage sf6 52 d1otja_ not modelled 8.3 27 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 53 c3r1jB_ not modelled 8.1 20 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 54 c2lc3A_ not modelled 7.9 30 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hectd1; PDBTitle: solution nmr structure of a helical bundle domain from human e3 ligase2 hectd1. northeast structural genomics consortium (nesg) target3 ht6305a 55 d1oiha_ not modelled 7.7 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 56 c2wawA_ not modelled 7.6 7 PDB header:unknown function Chain: A: PDB Molecule:moba relate protein; PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1 57 c3nnlB_ not modelled 7.2 20 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 58 c3n29A_ not modelled 7.1 15 PDB header:lyase Chain: A: PDB Molecule:carboxynorspermidine decarboxylase; PDBTitle: crystal structure of carboxynorspermidine decarboxylase complexed with2 norspermidine from campylobacter jejuni 59 c2pfrB_ not modelled 7.0 17 PDB header:transferase Chain: B: PDB Molecule:arylamine n-acetyltransferase 2; PDBTitle: human n-acetyltransferase 2 60 d1xjsa_ not modelled 6.8 22 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 61 d1jr7a_ not modelled 6.5 7 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 62 d2hawa1 not modelled 6.4 10 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 63 c3bdeA_ not modelled 6.4 17 PDB header:unknown function Chain: A: PDB Molecule:mll5499 protein; PDBTitle: crystal structure of a dabb family protein with a ferredoxin-like fold2 (mll5499) from mesorhizobium loti maff303099 at 1.79 a resolution 64 d1hkva1 not modelled 6.4 7 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 65 c3bguA_ not modelled 6.4 7 PDB header:unknown function Chain: A: PDB Molecule:ferredoxin-like protein of unknown function; PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (tfu_0763) from thermobifida fusca yx at 1.50 a resolution 66 c3al6A_ not modelled 6.2 20 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 67 d2bsza1 not modelled 6.1 21 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 68 c3jxoB_ not modelled 5.8 16 PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 69 d1w6va1 not modelled 5.8 25 Fold:DUSP-like Superfamily:DUSP-like Family:DUSP, domain in ubiquitin-specific proteases 70 c2cr4A_ not modelled 5.7 18 PDB header:signaling protein Chain: A: PDB Molecule:sh3 domain-binding protein 2; PDBTitle: solution structure of the sh2 domain of human sh3bp2 protein 71 d1asua_ not modelled 5.7 18 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 72 c3lybC_ not modelled 5.7 20 PDB header:hydrolase Chain: C: PDB Molecule:putative endoribonuclease; PDBTitle: structure of putative endoribonuclease(kp1_3112) from2 klebsiella pneumoniae 73 d1w4ta1 not modelled 5.5 13 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Arylamine N-acetyltransferase 74 c2r32A_ not modelled 5.5 31 PDB header:immune system Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand PDBTitle: crystal structure of human gitrl variant 75 c3d01G_ not modelled 5.5 23 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the protein atu1372 with unknown function from2 agrobacterium tumefaciens 76 c2zkqq_ not modelled 5.4 25 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 77 d1hyoa2 not modelled 5.4 23 Fold:FAH Superfamily:FAH Family:FAH 78 c1nhgD_ not modelled 5.3 15 PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: crystal structure analysis of plasmodium falciparum enoyl-2 acyl-carrier-protein reductase with triclosan 79 c2eobA_ not modelled 5.3 14 PDB header:hydrolase Chain: A: PDB Molecule:1-phosphatidylinositol-4,5-bisphosphate PDBTitle: solution structure of the second sh2 domain from rat plc2 gamma-2 80 c1e8cB_ not modelled 5.2 8 PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli 81 c2r8uA_ not modelled 5.2 9 PDB header:cell cycle Chain: A: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: structure of fragment of human end-binding protein 1 (eb1)2 containing the n-terminal domain at 1.35 a resolution 82 d2hg6a1 not modelled 5.2 67 Fold:PA1123-like Superfamily:PA1123-like Family:PA1123-like 83 d1r9pa_ not modelled 5.1 19 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0