Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	R	T	F	A	V	I	L	T	L	L	C	S	F	C	I	G	Q	A	L	A	G	G	I	V	L	Q	R	T	R	V	I	Y	D	A	S	R	K	E	A	A	L	P	V	A	N	K	G	A	E	T	P	Y	L	L	Q	S	W
Secondary structure
SS confidence
Disorder		?	?	?	?																		?	?	?	?													?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	D	N	I	D	G	K	S	R	A	P	F	I	I	T	P	P	L	F	R	L	E	A	G	D	D	S	S	L	R	I	I	K	T	A	D	N	L	P	E	N	K	E	S	L	F	Y	I	N	V	R	A	I	P	A	K	K	K	S	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?							?	?						?			?	?									?	?	?	?															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	V	N	A	N	E	L	T	L	V	F	K	T	R	I	K	M	F	Y	R	P	A	H	L	K	G	R	V	N	D	A	W	K	S	L	E	F	K	R	S	D	H	S	L	N	I	Y	N	P	T	E	Y	Y	V	V	F	A	G	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?																			?	?	?	?	?	?	?	?	?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence		V	D	K	T	D	L	T	S	K	I	E	Y	I	A	P	G	E	H	K	Q	L	P	L	P	A	S	G	G	K	N	V	K	W	A	A	I	N	D	Y	G	G	S	S	G	T	E	T	R	P	L	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?							?							?	?	?																	?	?	?			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qun chain A Region: 25 - 231 Aligned: 199 Modelled: 207 Confidence: 100.0% Identity: 40% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 1z9s chain A Region: 21 - 230 Aligned: 195 Modelled: 210 Confidence: 100.0% Identity: 30% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 2co7 chain B Region: 20 - 230 Aligned: 197 Modelled: 211 Confidence: 100.0% Identity: 36% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1l4i chain A Region: 25 - 230 Aligned: 188 Modelled: 197 Confidence: 100.0% Identity: 39% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 1qpx chain A Region: 25 - 228 Aligned: 189 Modelled: 204 Confidence: 100.0% Identity: 36% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 3f6i chain B Region: 25 - 226 Aligned: 181 Modelled: 195 Confidence: 100.0% Identity: 30% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 3q48 chain B Region: 27 - 228 Aligned: 178 Modelled: 185 Confidence: 100.0% Identity: 36% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 20 - 144 Aligned: 117 Modelled: 125 Confidence: 100.0% Identity: 39% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 25 - 145 Aligned: 115 Modelled: 121 Confidence: 100.0% Identity: 46% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 25 - 148 Aligned: 120 Modelled: 124 Confidence: 100.0% Identity: 43% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1p5v chain A domain 1 Region: 20 - 144 Aligned: 111 Modelled: 125 Confidence: 100.0% Identity: 34% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 25 - 144 Aligned: 111 Modelled: 120 Confidence: 100.0% Identity: 48% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 2 Region: 147 - 231 Aligned: 83 Modelled: 85 Confidence: 99.9% Identity: 30% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 145 - 230 Aligned: 79 Modelled: 86 Confidence: 99.8% Identity: 28% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 145 - 230 Aligned: 80 Modelled: 86 Confidence: 99.8% Identity: 30% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 147 - 230 Aligned: 75 Modelled: 84 Confidence: 99.7% Identity: 28% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2j2z chain A domain 2 Region: 149 - 225 Aligned: 75 Modelled: 77 Confidence: 99.7% Identity: 27% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 23 - 121 Aligned: 90 Modelled: 98 Confidence: 97.2% Identity: 16% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1grw chain A Region: 23 - 141 Aligned: 113 Modelled: 119 Confidence: 96.9% Identity: 17% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 26 - 110 Aligned: 79 Modelled: 85 Confidence: 96.6% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 1 c1qunA_ 2 c1z9sA_ 3 c2co7B_ 4 c1l4iA_ 5 c1qpxA_ 6 c3f6iB_ 7 c3q48B_ 8 d2co7b1 9 d3bwuc1 10 d2j2za1 11 d1p5va1 12 d1l4ia1 13 d3bwuc2 14 d1p5va2 15 d2co7b2 16 d1l4ia2 17 d2j2za2 18 d1m1sa_ 19 d1grwa_ 20 d1rowa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qunA_ 100.0 40 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 2 c1z9sA_ 100.0 30 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 3 c2co7B_ 100.0 36 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c1l4iA_ 100.0 39 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 5 c1qpxA_ 100.0 36 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 6 c3f6iB_ 100.0 30 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 7 c3q48B_ 100.0 36 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 8 d2co7b1 100.0 39 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d3bwuc1 100.0 46 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 100.0 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d1p5va1 100.0 34 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 48 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d3bwuc2 99.9 30 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.8 28 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d2co7b2 99.8 30 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d1l4ia2 99.7 28 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d2j2za2 99.7 27 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 97.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1grwa_ 96.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 d1rowa_ 96.6 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 21 d1mspa_ not modelled 96.1 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 22 c2qsvA_ not modelled 95.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 23 c1z9oB_ not modelled 94.6 14 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 24 c2e6jA_ not modelled 92.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 25 d2vzsa2 not modelled 92.0 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 26 c3o0lB_ not modelled 91.6 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 27 c2ys4A_ not modelled 88.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 28 c3qbtH_ not modelled 87.8 12 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 29 c3qisA_ not modelled 87.6 12 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 30 d1wica_ not modelled 82.7 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 31 d1ejxb_ not modelled 76.3 18 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 32 d4ubpb_ not modelled 75.4 19 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 33 c3ac0B_ not modelled 74.1 16 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 34 d2dpka1 not modelled 71.8 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 35 d1e9ya1 not modelled 69.3 23 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 36 c3ginB_ not modelled 64.1 10 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 37 c1e9zA_ not modelled 61.2 23 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 38 d1k3ra1 not modelled 55.7 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 39 c3qgaD_ not modelled 54.5 20 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 40 c2x41A_ not modelled 49.6 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 41 c2je8B_ not modelled 49.1 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 42 c3jt0B_ not modelled 43.2 11 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 43 c3eujB_ not modelled 41.5 33 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 44 d1aoza2 not modelled 41.3 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 45 c3rb7E_ not modelled 41.3 16 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 46 c3h6aB_ not modelled 37.8 8 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 47 d1hfua2 not modelled 32.5 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 48 d1kyaa2 not modelled 31.5 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 49 d1jz8a2 not modelled 31.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 50 d1ufga_ not modelled 27.8 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 51 c2vzvB_ not modelled 24.8 17 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 52 d1e42a1 not modelled 24.5 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 53 d2q9oa2 not modelled 20.8 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 54 c3k6sB_ not modelled 20.6 22 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 55 d1hmja_ not modelled 19.0 13 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 56 c1yycA_ not modelled 18.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 57 c2qvkA_ not modelled 18.7 9 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 58 c3butA_ not modelled 16.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 59 d1xo8a_ not modelled 16.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 60 d1r7aa1 not modelled 15.8 24 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 61 c3e9uA_ not modelled 15.7 12 PDB header:membrane protein Chain: A: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of calx cbd2 domain 62 c2lllA_ not modelled 15.0 14 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 63 d1ifra_ not modelled 14.7 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 64 d1w8oa1 not modelled 13.5 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 65 c2f1eA_ not modelled 13.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 66 d1yq2a1 not modelled 13.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 67 d1gyca2 not modelled 13.0 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 68 c2l02B_ not modelled 12.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 69 d2fwua1 not modelled 11.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 70 c1v7wA_ not modelled 11.0 11 PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac 71 d1ivta_ not modelled 10.4 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 72 d1pkoa_ not modelled 9.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 73 d2huha1 not modelled 8.9 16 Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain 74 c2q9oA_ not modelled 8.1 25 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase-1; PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase 75 c3of6D_ not modelled 8.0 21 PDB header:immune system Chain: D: PDB Molecule:pre t-cell antigen receptor alpha; PDBTitle: human pre-t cell receptor crystal structure 76 c2pheC_ not modelled 7.9 67 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 77 c2phgB_ not modelled 7.8 67 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 78 c2qziA_ not modelled 7.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 79 c3ppsD_ not modelled 7.4 27 PDB header:oxidoreductase Chain: D: PDB Molecule:laccase; PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria 80 c1wkwB_ not modelled 7.3 63 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 81 c1a65A_ not modelled 7.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: type-2 cu-depleted laccase from coprinus cinereus 82 c1hymB_ not modelled 7.0 31 PDB header:hydrolase (serine proteinase) Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v; PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr2 structure) 83 c1u8cB_ not modelled 7.0 22 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure 84 c1zpuE_ not modelled 6.8 12 PDB header:oxidoreductase Chain: E: PDB Molecule:iron transport multicopper oxidase fet3; PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import 85 c1z65A_ not modelled 6.8 21 PDB header:unknown function Chain: A: PDB Molecule:prion-like protein doppel; PDBTitle: mouse doppel 1-30 peptide 86 d1cuoa_ not modelled 5.6 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 87 c3i3fB_ not modelled 5.5 9 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: hypothetical protein from giardia lamblia gl50803_14299

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0