Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	N	K	P	S	A	E	E	L	K	K	N	L	S	E	M	Q	F	Y	V	T	Q	N	H	G	T	E	P	P	F	T	G	R	L	L	H	N	K	R	D	G	V	Y	H	C	L	I	C	D	A	P	L	F	H	S	Q	T	K	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	S	G	C	G	W	P	S	F	Y	E	P	V	S	E	E	S	I	R	Y	I	K	D	L	S	H	G	M	Q	R	I	E	I	R	C	G	N	C	D	A	H	L	G	H	V	F	P	D	G	P	Q	P	T	G	E	R	Y	C	V	N
Secondary structure
SS confidence
Disorder																			?						?	?																?	?				?	?				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Sequence		S	A	S	L	R	F	T	D	G	E	N	G	E	E	I	N	G
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1l1d chain A Region: 3 - 135 Aligned: 133 Modelled: 129 Confidence: 100.0% Identity: 47% Fold: Mss4-like Superfamily: Mss4-like Family: SelR domain Phyre2 PDB 3e0m chain B Region: 3 - 135 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 52% PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb Phyre2 PDB 2k8d chain A Region: 3 - 132 Aligned: 130 Modelled: 130 Confidence: 100.0% Identity: 51% PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb; PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase Phyre2 PDB 3hcj chain B Region: 3 - 136 Aligned: 134 Modelled: 134 Confidence: 100.0% Identity: 51% PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form) Phyre2 PDB 1xm0 chain A domain 1 Region: 4 - 135 Aligned: 131 Modelled: 131 Confidence: 100.0% Identity: 50% Fold: Mss4-like Superfamily: Mss4-like Family: SelR domain Phyre2 PDB 3cez chain A Region: 3 - 129 Aligned: 127 Modelled: 127 Confidence: 100.0% Identity: 50% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei Phyre2 PDB 2l1u chain A Region: 8 - 136 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 52% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein Phyre2 PDB 2kao chain A Region: 31 - 135 Aligned: 104 Modelled: 105 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1; PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant) Phyre2 PDB 3fac chain E Region: 68 - 135 Aligned: 62 Modelled: 68 Confidence: 61.8% Identity: 21% PDB header:unknown function Chain: E: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83. Phyre2 PDB 1aj7 chain H domain 1 Region: 40 - 59 Aligned: 20 Modelled: 20 Confidence: 48.4% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1gaf chain H domain 1 Region: 40 - 59 Aligned: 20 Modelled: 20 Confidence: 46.1% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1v7m chain H domain 1 Region: 40 - 59 Aligned: 20 Modelled: 20 Confidence: 45.6% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1ver chain A Region: 40 - 59 Aligned: 20 Modelled: 20 Confidence: 41.5% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1j8h chain D domain 1 Region: 40 - 64 Aligned: 25 Modelled: 25 Confidence: 41.4% Identity: 16% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1pft chain A Region: 32 - 71 Aligned: 38 Modelled: 40 Confidence: 40.6% Identity: 21% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1b88 chain A Region: 39 - 64 Aligned: 26 Modelled: 26 Confidence: 36.8% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1dl6 chain A Region: 32 - 71 Aligned: 38 Modelled: 40 Confidence: 35.9% Identity: 24% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1mim chain L domain 1 Region: 40 - 59 Aligned: 20 Modelled: 20 Confidence: 35.5% Identity: 25% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1ggb chain H domain 1 Region: 40 - 59 Aligned: 20 Modelled: 20 Confidence: 33.8% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 PDB 1nak chain H domain 1 Region: 40 - 59 Aligned: 20 Modelled: 20 Confidence: 32.5% Identity: 25% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: V set domains (antibody variable domain-like) Phyre2 1 d1l1da_ 2 c3e0mB_ 3 c2k8dA_ 4 c3hcjB_ 5 d1xm0a1 6 c3cezA_ 7 c2l1uA_ 8 c2kaoA_ 9 c3facE_ 10 d1aj7h1 11 d1gafh1 12 d1v7mh1 13 d1vera_ 14 d1j8hd1 15 d1pfta_ 16 d1b88a_ 17 d1dl6a_ 18 d1miml1 19 d1ggbh1 20 d1nakh1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1l1da_ 100.0 47 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 2 c3e0mB_ 100.0 52 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 3 c2k8dA_ 100.0 51 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb; PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase 4 c3hcjB_ 100.0 51 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form) 5 d1xm0a1 100.0 50 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 6 c3cezA_ 100.0 50 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei 7 c2l1uA_ 100.0 52 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein 8 c2kaoA_ 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1; PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant) 9 c3facE_ 61.8 21 PDB header:unknown function Chain: E: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83. 10 d1aj7h1 48.4 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 11 d1gafh1 46.1 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 12 d1v7mh1 45.6 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 13 d1vera_ 41.5 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 14 d1j8hd1 41.4 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 15 d1pfta_ 40.6 21 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 16 d1b88a_ 36.8 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 17 d1dl6a_ 35.9 24 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 18 d1miml1 35.5 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 19 d1ggbh1 33.8 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 20 d1nakh1 32.5 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 21 c3goxB_ not modelled 30.2 26 PDB header:hydrolase/dna Chain: B: PDB Molecule:restriction endonuclease hpy99i; PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta 22 d3dgga1 not modelled 29.2 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 23 c2w4rB_ not modelled 28.6 18 PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase dhx58; PDBTitle: crystal structure of the regulatory domain of human lgp2 24 d1beca1 not modelled 28.5 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 25 d1dfbl1 not modelled 28.5 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 26 c1ua6H_ not modelled 28.2 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant sfsf complexed with2 hen egg white lysozyme complex 27 d1jnlh1 not modelled 27.7 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 28 d1w72h1 not modelled 27.4 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 29 c1ic4H_ not modelled 26.6 20 PDB header:protein binding/hydrolase Chain: H: PDB Molecule:igg1 fab chain h; PDBTitle: crystal structure of hyhel-10 fv mutant(hd32a)-hen lysozyme2 complex 30 c1s1iY_ not modelled 26.2 42 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 31 c3h0gI_ not modelled 26.2 18 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 32 c2zkr2_ not modelled 26.1 30 PDB header:ribosomal protein/rna Chain: 2: PDB Molecule:60s ribosomal protein l37e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 33 d1smyd_ not modelled 26.0 36 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 34 c3k7aM_ not modelled 25.7 20 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 35 c1qokA_ not modelled 25.1 22 PDB header:immunoglobulin Chain: A: PDB Molecule:mfe-23 recombinant antibody fragment; PDBTitle: mfe-23 an anti-carcinoembryonic antigen single-chain fv2 antibody 36 d1lp9e1 not modelled 25.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 37 d1w72l1 not modelled 25.0 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 38 d1sm3h1 not modelled 25.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 39 c2dqeH_ not modelled 24.7 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (hy53a) complexed2 with hen egg lysozyme 40 d1n7ml1 not modelled 24.6 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 41 d1dl7h_ not modelled 24.5 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 42 c2dqcH_ not modelled 24.5 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant(hy33f) complexed2 with hen egg lysozyme 43 d2oslb1 not modelled 24.3 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 44 c2znwB_ not modelled 24.3 19 PDB header:immune system/hydrolase Chain: B: PDB Molecule:scfv10; PDBTitle: crystal structure of scfv10 in complex with hen egg lysozyme 45 c1i3qI_ not modelled 24.3 12 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 46 d1ospl1 not modelled 23.7 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 47 d2ntsp1 not modelled 23.7 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 48 d1q9rb1 not modelled 23.7 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 49 d2i27n1 not modelled 23.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 50 d1nbyb1 not modelled 23.5 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 51 c4a18A_ not modelled 23.2 29 PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l37; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 52 d1nsnl1 not modelled 23.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 53 d1pz5b1 not modelled 23.2 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 54 d1x6ma_ not modelled 22.9 24 Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa 55 d2h1ph1 not modelled 22.8 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 56 d3c6la1 not modelled 22.8 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 57 d1igch1 not modelled 22.7 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 58 c3jywY_ not modelled 22.4 42 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 59 c2gkiA_ not modelled 22.4 30 PDB header:immune system Chain: A: PDB Molecule:nuclease; PDBTitle: heavy and light chain variable single domains of an anti-dna binding2 antibody hydrolyze both double- and single-stranded dnas without3 sequence specificity 60 d1a4ka1 not modelled 22.1 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 61 d1nj9b1 not modelled 21.9 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 62 c3a6bH_ not modelled 21.8 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh, anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ln32d complexed with hen egg2 white lysozyme 63 c2otuC_ not modelled 21.8 16 PDB header:immune system Chain: C: PDB Molecule:fv light chain variable domain; PDBTitle: crystal structure of fv polyglutamine complex 64 d1kcvh1 not modelled 21.7 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 65 d1ndmb1 not modelled 21.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 66 d1emth1 not modelled 21.7 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 67 d1igfl1 not modelled 21.7 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 68 c1dzbB_ not modelled 21.6 26 PDB header:immune system Chain: B: PDB Molecule:scfv fragment 1f9; PDBTitle: crystal structure of phage library-derived single-chain fv2 fragment 1f9 in complex with turkey egg-white lysozyme 69 c3cm9J_ not modelled 21.6 30 PDB header:immune system Chain: J: PDB Molecule:secretory component; PDBTitle: solution structure of human siga2 70 c3chnJ_ not modelled 21.6 30 PDB header:immune system Chain: J: PDB Molecule:secretory component; PDBTitle: solution structure of human secretory iga1 71 d1igil1 not modelled 21.6 35 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 72 c2dqdH_ not modelled 21.5 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (hy50f) complexed2 with hen egg lysozyme 73 c1c08B_ not modelled 21.5 20 PDB header:immune system/hydrolase Chain: B: PDB Molecule:anti-hen egg white lysozyme antibody (hyhel-10); PDBTitle: crystal structure of hyhel-10 fv-hen lysozyme complex 74 c2dqiH_ not modelled 21.5 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (ly50a) complexed2 with hen egg lysozyme 75 c3a67H_ not modelled 21.5 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh, anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ln31d complexed with hen egg2 white lysozyme 76 d1j1ph_ not modelled 21.5 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 77 c1j1pH_ not modelled 21.5 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ls91a complexed2 with hen egg white lysozyme 78 c3a6cH_ not modelled 21.5 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh, anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ln92d complexed with hen egg2 white lysozyme 79 c2dqjH_ not modelled 21.5 20 PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv (wild-type) complexed with2 hen egg lysozyme at 1.8a resolution 80 d2dd8l1 not modelled 21.5 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 81 d1gpoh1 not modelled 21.2 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 82 c3nn8B_ not modelled 21.2 29 PDB header:immune system Chain: B: PDB Molecule:engineered scfv, light chain; PDBTitle: crystal structure of engineered antibody fragment based on 3d5 83 d1dqlh_ not modelled 21.1 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 84 d1mamh1 not modelled 21.0 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 85 d1fpth1 not modelled 20.9 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 86 c1ic5H_ not modelled 20.7 15 PDB header:protein binding/hydrolase Chain: H: PDB Molecule:igg1 fab chain h; PDBTitle: crystal structure of hyhel-10 fv mutant(hd99a)-hen lysozyme2 complex 87 c2dqfE_ not modelled 20.6 20 PDB header:immune system/hydrolase Chain: E: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (y33ay53a)2 complexed with hen egg lysozyme 88 d1ub5b1 not modelled 20.5 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 89 d1a5fh1 not modelled 20.3 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 90 c1nqbC_ not modelled 20.2 32 PDB header:immunoglobulin Chain: C: PDB Molecule:single-chain antibody fragment; PDBTitle: trivalent antibody fragment 91 d1q9wb1 not modelled 20.1 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 92 d1h8ba_ not modelled 20.1 30 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 93 d2qqnh1 not modelled 20.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 94 d1mexh1 not modelled 19.9 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 95 d1bbjb1 not modelled 19.9 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 96 c3trzE_ not modelled 19.6 29 PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element 97 d1kelh1 not modelled 19.6 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 98 d1l7tl1 not modelled 19.5 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 99 d2dkta2 not modelled 19.5 31 Fold:Zinc hairpin stack Superfamily:Zinc hairpin stack Family:Zinc hairpin stack

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0