Phyre 2 Results for P0A746

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Email | l.a.kelley@imperial.ac.uk
Description | P0A746
Date | Wed Jan 25 15:20:17 GMT 2012
Unique Job ID | 64c7bec2bade21d8

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1l1da_
Top template information
Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
133 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | N | K | P | S | A | E | E | L | K | K | N | L | S | E | M | Q | F | Y | V | T | Q | N | H | G | T | E | P | P | F | T | G | R | L | L | H | N | K | R | D | G | V | Y | H | C | L | I | C | D | A | P | L | F | H | S | Q | T | K | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | S | G | C | G | W | P | S | F | Y | E | P | V | S | E | E | S | I | R | Y | I | K | D | L | S | H | G | M | Q | R | I | E | I | R | C | G | N | C | D | A | H | L | G | H | V | F | P | D | G | P | Q | P | T | G | E | R | Y | C | V | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  | ? | ? |  |  |  | ? |  | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | .
Sequence |  | S | A | S | L | R | F | T | D | G | E | N | G | E | E | I | N | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1l1da_ |

### PDB 1l1d chain A

Region: 3 - 135
Aligned: 133
Modelled: 129
Confidence: 100.0%
Identity: 47%
Fold: Mss4-like
Superfamily: Mss4-like
Family: SelR domain

Phyre2
2 |
| c3e0mB_ |

### PDB 3e0m chain B

Region: 3 - 135
Aligned: 133
Modelled: 133
Confidence: 100.0%
Identity: 52%
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb

Phyre2
3 |
| c2k8dA_ |

### PDB 2k8d chain A

Region: 3 - 132
Aligned: 130
Modelled: 130
Confidence: 100.0%
Identity: 51%
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase

Phyre2
4 |
| c3hcjB_ |

### PDB 3hcj chain B

Region: 3 - 136
Aligned: 134
Modelled: 134
Confidence: 100.0%
Identity: 51%
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)

Phyre2
5 |
| d1xm0a1 |

### PDB 1xm0 chain A domain 1

Region: 4 - 135
Aligned: 131
Modelled: 131
Confidence: 100.0%
Identity: 50%
Fold: Mss4-like
Superfamily: Mss4-like
Family: SelR domain

Phyre2
6 |
| c3cezA_ |

### PDB 3cez chain A

Region: 3 - 129
Aligned: 127
Modelled: 127
Confidence: 100.0%
Identity: 50%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei

Phyre2
7 |
| c2l1uA_ |

### PDB 2l1u chain A

Region: 8 - 136
Aligned: 129
Modelled: 129
Confidence: 100.0%
Identity: 52%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial;
PDBTitle: structure-functional analysis of mammalian msrb2 protein

Phyre2
8 |
| c2kaoA_ |

### PDB 2kao chain A

Region: 31 - 135
Aligned: 104
Modelled: 105
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1;
PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant)

Phyre2
9 |
| c3facE_ |

### PDB 3fac chain E

Region: 68 - 135
Aligned: 62
Modelled: 68
Confidence: 61.8%
Identity: 21%
PDB header:unknown function
Chain: E: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83.

Phyre2
10 |
| d1aj7h1 |

### PDB 1aj7 chain H domain 1

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 48.4%
Identity: 20%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
11 |
| d1gafh1 |

### PDB 1gaf chain H domain 1

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 46.1%
Identity: 20%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
12 |
| d1v7mh1 |

### PDB 1v7m chain H domain 1

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 45.6%
Identity: 20%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
13 |
| d1vera_ |

### PDB 1ver chain A

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 41.5%
Identity: 20%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
14 |
| d1j8hd1 |

### PDB 1j8h chain D domain 1

Region: 40 - 64
Aligned: 25
Modelled: 25
Confidence: 41.4%
Identity: 16%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
15 |
| d1pfta_ |

### PDB 1pft chain A

Region: 32 - 71
Aligned: 38
Modelled: 40
Confidence: 40.6%
Identity: 21%
Fold: Rubredoxin-like
Superfamily: Zinc beta-ribbon
Family: Transcriptional factor domain

Phyre2
16 |
| d1b88a_ |

### PDB 1b88 chain A

Region: 39 - 64
Aligned: 26
Modelled: 26
Confidence: 36.8%
Identity: 15%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
17 |
| d1dl6a_ |

### PDB 1dl6 chain A

Region: 32 - 71
Aligned: 38
Modelled: 40
Confidence: 35.9%
Identity: 24%
Fold: Rubredoxin-like
Superfamily: Zinc beta-ribbon
Family: Transcriptional factor domain

Phyre2
18 |
| d1miml1 |

### PDB 1mim chain L domain 1

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 35.5%
Identity: 25%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
19 |
| d1ggbh1 |

### PDB 1ggb chain H domain 1

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 33.8%
Identity: 15%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
20 |
| d1nakh1 |

### PDB 1nak chain H domain 1

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 32.5%
Identity: 25%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1l1da_ |
|  | 100.0 | 47 | Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain
2 | c3e0mB_ |
|  | 100.0 | 52 | PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb
3 | c2k8dA_ |
|  | 100.0 | 51 | PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb; PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
4 | c3hcjB_ |
|  | 100.0 | 51 | PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)
5 | d1xm0a1 |
|  | 100.0 | 50 | Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain
6 | c3cezA_ |
|  | 100.0 | 50 | PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei
7 | c2l1uA_ |
|  | 100.0 | 52 | PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein
8 | c2kaoA_ |
|  | 100.0 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1; PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant)
9 | c3facE_ |
|  | 61.8 | 21 | PDB header:unknown function Chain: E: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83.
10 | d1aj7h1 |
|  | 48.4 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
11 | d1gafh1 |
|  | 46.1 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
12 | d1v7mh1 |
|  | 45.6 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
13 | d1vera_ |
|  | 41.5 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
14 | d1j8hd1 |
|  | 41.4 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
15 | d1pfta_ |
|  | 40.6 | 21 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain
16 | d1b88a_ |
|  | 36.8 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
17 | d1dl6a_ |
|  | 35.9 | 24 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain
18 | d1miml1 |
|  | 35.5 | 25 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
19 | d1ggbh1 |
|  | 33.8 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
20 | d1nakh1 |
|  | 32.5 | 25 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
21 | c3goxB_ |
| not modelled | 30.2 | 26 | PDB header:hydrolase/dna Chain: B: PDB Molecule:restriction endonuclease hpy99i; PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta
22 | d3dgga1 |
| not modelled | 29.2 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
23 | c2w4rB_ |
| not modelled | 28.6 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase dhx58; PDBTitle: crystal structure of the regulatory domain of human lgp2
24 | d1beca1 |
| not modelled | 28.5 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
25 | d1dfbl1 |
| not modelled | 28.5 | 24 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
26 | c1ua6H_ |
| not modelled | 28.2 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant sfsf complexed with2 hen egg white lysozyme complex
27 | d1jnlh1 |
| not modelled | 27.7 | 25 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
28 | d1w72h1 |
| not modelled | 27.4 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
29 | c1ic4H_ |
| not modelled | 26.6 | 20 | PDB header:protein binding/hydrolase Chain: H: PDB Molecule:igg1 fab chain h; PDBTitle: crystal structure of hyhel-10 fv mutant(hd32a)-hen lysozyme2 complex
30 | c1s1iY_ |
| not modelled | 26.2 | 42 | PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
31 | c3h0gI_ |
| not modelled | 26.2 | 18 | PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe
32 | c2zkr2_ |
| not modelled | 26.1 | 30 | PDB header:ribosomal protein/rna Chain: 2: PDB Molecule:60s ribosomal protein l37e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
33 | d1smyd_ |
| not modelled | 26.0 | 36 | Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime
34 | c3k7aM_ |
| not modelled | 25.7 | 20 | PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
35 | c1qokA_ |
| not modelled | 25.1 | 22 | PDB header:immunoglobulin Chain: A: PDB Molecule:mfe-23 recombinant antibody fragment; PDBTitle: mfe-23 an anti-carcinoembryonic antigen single-chain fv2 antibody
36 | d1lp9e1 |
| not modelled | 25.0 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
37 | d1w72l1 |
| not modelled | 25.0 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
38 | d1sm3h1 |
| not modelled | 25.0 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
39 | c2dqeH_ |
| not modelled | 24.7 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (hy53a) complexed2 with hen egg lysozyme
40 | d1n7ml1 |
| not modelled | 24.6 | 24 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
41 | d1dl7h_ |
| not modelled | 24.5 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
42 | c2dqcH_ |
| not modelled | 24.5 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant(hy33f) complexed2 with hen egg lysozyme
43 | d2oslb1 |
| not modelled | 24.3 | 30 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
44 | c2znwB_ |
| not modelled | 24.3 | 19 | PDB header:immune system/hydrolase Chain: B: PDB Molecule:scfv10; PDBTitle: crystal structure of scfv10 in complex with hen egg lysozyme
45 | c1i3qI_ |
| not modelled | 24.3 | 12 | PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
46 | d1ospl1 |
| not modelled | 23.7 | 26 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
47 | d2ntsp1 |
| not modelled | 23.7 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
48 | d1q9rb1 |
| not modelled | 23.7 | 14 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
49 | d2i27n1 |
| not modelled | 23.5 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
50 | d1nbyb1 |
| not modelled | 23.5 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
51 | c4a18A_ |
| not modelled | 23.2 | 29 | PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l37; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
52 | d1nsnl1 |
| not modelled | 23.2 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
53 | d1pz5b1 |
| not modelled | 23.2 | 22 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
54 | d1x6ma_ |
| not modelled | 22.9 | 24 | Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa
55 | d2h1ph1 |
| not modelled | 22.8 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
56 | d3c6la1 |
| not modelled | 22.8 | 22 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
57 | d1igch1 |
| not modelled | 22.7 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
58 | c3jywY_ |
| not modelled | 22.4 | 42 | PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
59 | c2gkiA_ |
| not modelled | 22.4 | 30 | PDB header:immune system Chain: A: PDB Molecule:nuclease; PDBTitle: heavy and light chain variable single domains of an anti-dna binding2 antibody hydrolyze both double- and single-stranded dnas without3 sequence specificity
60 | d1a4ka1 |
| not modelled | 22.1 | 40 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
61 | d1nj9b1 |
| not modelled | 21.9 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
62 | c3a6bH_ |
| not modelled | 21.8 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh, anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ln32d complexed with hen egg2 white lysozyme
63 | c2otuC_ |
| not modelled | 21.8 | 16 | PDB header:immune system Chain: C: PDB Molecule:fv light chain variable domain; PDBTitle: crystal structure of fv polyglutamine complex
64 | d1kcvh1 |
| not modelled | 21.7 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
65 | d1ndmb1 |
| not modelled | 21.7 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
66 | d1emth1 |
| not modelled | 21.7 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
67 | d1igfl1 |
| not modelled | 21.7 | 33 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
68 | c1dzbB_ |
| not modelled | 21.6 | 26 | PDB header:immune system Chain: B: PDB Molecule:scfv fragment 1f9; PDBTitle: crystal structure of phage library-derived single-chain fv2 fragment 1f9 in complex with turkey egg-white lysozyme
69 | c3cm9J_ |
| not modelled | 21.6 | 30 | PDB header:immune system Chain: J: PDB Molecule:secretory component; PDBTitle: solution structure of human siga2
70 | c3chnJ_ |
| not modelled | 21.6 | 30 | PDB header:immune system Chain: J: PDB Molecule:secretory component; PDBTitle: solution structure of human secretory iga1
71 | d1igil1 |
| not modelled | 21.6 | 35 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
72 | c2dqdH_ |
| not modelled | 21.5 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (hy50f) complexed2 with hen egg lysozyme
73 | c1c08B_ |
| not modelled | 21.5 | 20 | PDB header:immune system/hydrolase Chain: B: PDB Molecule:anti-hen egg white lysozyme antibody (hyhel-10); PDBTitle: crystal structure of hyhel-10 fv-hen lysozyme complex
74 | c2dqiH_ |
| not modelled | 21.5 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (ly50a) complexed2 with hen egg lysozyme
75 | c3a67H_ |
| not modelled | 21.5 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh, anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ln31d complexed with hen egg2 white lysozyme
76 | d1j1ph_ |
| not modelled | 21.5 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
77 | c1j1pH_ |
| not modelled | 21.5 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ls91a complexed2 with hen egg white lysozyme
78 | c3a6cH_ |
| not modelled | 21.5 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh, anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant ln92d complexed with hen egg2 white lysozyme
79 | c2dqjH_ |
| not modelled | 21.5 | 20 | PDB header:immune system/hydrolase Chain: H: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv (wild-type) complexed with2 hen egg lysozyme at 1.8a resolution
80 | d2dd8l1 |
| not modelled | 21.5 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
81 | d1gpoh1 |
| not modelled | 21.2 | 17 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
82 | c3nn8B_ |
| not modelled | 21.2 | 29 | PDB header:immune system Chain: B: PDB Molecule:engineered scfv, light chain; PDBTitle: crystal structure of engineered antibody fragment based on 3d5
83 | d1dqlh_ |
| not modelled | 21.1 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
84 | d1mamh1 |
| not modelled | 21.0 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
85 | d1fpth1 |
| not modelled | 20.9 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
86 | c1ic5H_ |
| not modelled | 20.7 | 15 | PDB header:protein binding/hydrolase Chain: H: PDB Molecule:igg1 fab chain h; PDBTitle: crystal structure of hyhel-10 fv mutant(hd99a)-hen lysozyme2 complex
87 | c2dqfE_ |
| not modelled | 20.6 | 20 | PDB header:immune system/hydrolase Chain: E: PDB Molecule:ig vh,anti-lysozyme; PDBTitle: crystal structure of hyhel-10 fv mutant (y33ay53a)2 complexed with hen egg lysozyme
88 | d1ub5b1 |
| not modelled | 20.5 | 40 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
89 | d1a5fh1 |
| not modelled | 20.3 | 25 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
90 | c1nqbC_ |
| not modelled | 20.2 | 32 | PDB header:immunoglobulin Chain: C: PDB Molecule:single-chain antibody fragment; PDBTitle: trivalent antibody fragment
91 | d1q9wb1 |
| not modelled | 20.1 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
92 | d1h8ba_ |
| not modelled | 20.1 | 30 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
93 | d2qqnh1 |
| not modelled | 20.0 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
94 | d1mexh1 |
| not modelled | 19.9 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
95 | d1bbjb1 |
| not modelled | 19.9 | 20 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
96 | c3trzE_ |
| not modelled | 19.6 | 29 | PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element
97 | d1kelh1 |
| not modelled | 19.6 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
98 | d1l7tl1 |
| not modelled | 19.5 | 38 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like)
99 | d2dkta2 |
| not modelled | 19.5 | 31 | Fold:Zinc hairpin stack Superfamily:Zinc hairpin stack Family:Zinc hairpin stack

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0