Phyre 2 alignment of P0A746 with c1qokA_

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Job Description | P0A746
Confidence | 25.10% | Date | Wed Jan 25 15:20:17 GMT 2012
Rank | 35 | Aligned Residues | 23
% Identity | 22% | Template | c1qokA_
PDB info | PDB header:immunoglobulin | Chain: A: PDB Molecule:mfe-23 recombinant antibody fragment; | PDBTitle: mfe-23 an anti-carcinoembryonic antigen single-chain fv2 antibody
Resolution | 2.4 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 39 | 40 | . | . | . | . | . | . | . | . |  |  | . | 50 | . | . | . | . | . | . | . | . | . | 60 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | R | D | G | V | Y | H | C | L | I | . | . | C | D | A | P | L | F | H | S | Q | T | K | Y | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | D | A | A | T | Y | Y | C | Q | Q | R | S | S | Y | P | L | T | F | G | A | G | T | K | L | E
Template Known Secondary structure |  | G | G |  |  |  |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 241 | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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