Phyre 2 alignment of P0A746 with d1smyd_

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Job Description | P0A746
Confidence | 26.02% | Date | Wed Jan 25 15:20:17 GMT 2012
Rank | 33 | Aligned Residues | 11
% Identity | 36% | Template | d1smyd_
SCOP info | beta and beta-prime subunits of DNA dependent RNA-polymerase | beta and beta-prime subunits of DNA dependent RNA-polymerase | RNA-polymerase beta-prime
Resolution | 2.70

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 95 | . | . | . | . |  |  |  |  |  |  |  |  |  |  | 100 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Query Sequence |  | C | G | N | C | D | . | . | . | . | . | . | . | . | . | . | A | H | L | G | H | V
Query Conservation |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | C | E | R | C | G | V | E | V | T | K | S | I | V | R | R | Y | R | M | G | H | I
Template Known Secondary structure |  |  | S | S | S |  |  |  |  | S | S | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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