Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	I	S	I	K	T	P	E	D	I	E	K	M	R	V	A	G	R	L	A	A	E	V	L	E	M	I	E	P	Y	V	K	P	G	V	S	T	G	E	L	D	R	I	C	N	D	Y	I	V	N	E	Q	H	A	V	S	A	C	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	Y	H	G	Y	P	K	S	V	C	I	S	I	N	E	V	V	C	H	G	I	P	D	D	A	K	L	L	K	D	G	D	I	V	N	I	D	V	T	V	I	K	D	G	F	H	G	D	T	S	K	M	F	I	V	G	K	P	T	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	G	E	R	L	C	R	I	T	Q	E	S	L	Y	L	A	L	R	M	V	K	P	G	I	N	L	R	E	I	G	A	A	I	Q	K	F	V	E	A	E	G	F	S	V	V	R	E	Y	C	G	H	G	I	G	R	G	F	H	E	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	Q	V	L	H	Y	D	S	R	E	T	N	V	V	L	K	P	G	M	T	F	T	I	E	P	M	V	N	A	G	K	K	E	I	R	T	M	K	D	G	W	T	V	K	T	K	D	R	S	L	S	A	Q	Y	E	H	T	I	V	V
Secondary structure
SS confidence
Disorder									?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Sequence		T	D	N	G	C	E	I	L	T	L	R	K	D	D	T	I	P	A	I	I	S	H	D	E
Secondary structure
SS confidence
Disorder																						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gg2 chain A domain 1 Region: 3 - 264 Aligned: 262 Modelled: 262 Confidence: 100.0% Identity: 100% Fold: Creatinase/aminopeptidase Superfamily: Creatinase/aminopeptidase Family: Creatinase/aminopeptidase Phyre2 PDB 2g6p chain A Region: 2 - 261 Aligned: 258 Modelled: 260 Confidence: 100.0% Identity: 47% PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: crystal structure of truncated (delta 1-89) human methionine2 aminopeptidase type 1 in complex with pyridyl pyrimidine derivative Phyre2 PDB 2gz5 chain A Region: 2 - 261 Aligned: 258 Modelled: 260 Confidence: 100.0% Identity: 47% PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: human type 1 methionine aminopeptidase in complex with ovalicin at 1.12 ang Phyre2 PDB 3s6b chain A Region: 3 - 264 Aligned: 260 Modelled: 262 Confidence: 100.0% Identity: 42% PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of methionine aminopeptidase 1b from plasmodium2 falciparum, pf10_0150 Phyre2 PDB 3tav chain A Region: 1 - 252 Aligned: 251 Modelled: 252 Confidence: 100.0% Identity: 37% PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of a methionine aminopeptidase from mycobacterium2 abscessus Phyre2 PDB 3mx6 chain A Region: 3 - 255 Aligned: 251 Modelled: 253 Confidence: 100.0% Identity: 52% PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of methionine aminopeptidase from rickettsia2 prowazekii bound to methionine Phyre2 PDB 1yj3 chain A Region: 1 - 250 Aligned: 247 Modelled: 250 Confidence: 100.0% Identity: 51% PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure analysis of product bound methionine2 aminopeptidase type 1c from mycobacterium tuberculosis Phyre2 PDB 1o0x chain A Region: 3 - 250 Aligned: 247 Modelled: 248 Confidence: 100.0% Identity: 43% Fold: Creatinase/aminopeptidase Superfamily: Creatinase/aminopeptidase Family: Creatinase/aminopeptidase Phyre2 PDB 1w7v chain D Region: 1 - 261 Aligned: 240 Modelled: 253 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: D: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: znmg substituted aminopeptidase p from e. coli Phyre2 PDB 2okn chain B Region: 1 - 262 Aligned: 256 Modelled: 262 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal strcture of human prolidase Phyre2 PDB 1qxy chain A Region: 3 - 250 Aligned: 246 Modelled: 248 Confidence: 100.0% Identity: 33% Fold: Creatinase/aminopeptidase Superfamily: Creatinase/aminopeptidase Family: Creatinase/aminopeptidase Phyre2 PDB 3l24 chain A Region: 1 - 253 Aligned: 241 Modelled: 253 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of the nerve agent degrading2 organophosphate anhydrolase/prolidase in complex with3 inhibitors Phyre2 PDB 1chm chain A Region: 1 - 260 Aligned: 245 Modelled: 247 Confidence: 100.0% Identity: 18% PDB header:creatinase Chain: A: PDB Molecule:creatine amidinohydrolase; PDBTitle: enzymatic mechanism of creatine amidinohydrolase as deduced2 from crystal structures Phyre2 PDB 2zsg chain B Region: 1 - 256 Aligned: 227 Modelled: 239 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:aminopeptidase p, putative; PDBTitle: crystal structure of x-pro aminopeptidase from thermotoga maritima2 msb8 Phyre2 PDB 1chm chain A domain 2 Region: 5 - 260 Aligned: 242 Modelled: 243 Confidence: 100.0% Identity: 18% Fold: Creatinase/aminopeptidase Superfamily: Creatinase/aminopeptidase Family: Creatinase/aminopeptidase Phyre2 PDB 3ig4 chain E Region: 1 - 262 Aligned: 231 Modelled: 237 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: E: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: structure of a putative aminopeptidase p from bacillus anthracis Phyre2 PDB 1wy2 chain B Region: 3 - 256 Aligned: 226 Modelled: 237 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of the prolidase from pyrococcus horikoshii ot3 Phyre2 PDB 3q6d chain A Region: 1 - 256 Aligned: 227 Modelled: 239 Confidence: 100.0% Identity: 27% PDB header:viral protein Chain: A: PDB Molecule:proline dipeptidase; PDBTitle: xaa-pro dipeptidase from bacillus anthracis. Phyre2 PDB 2how chain B Region: 1 - 256 Aligned: 226 Modelled: 235 Confidence: 100.0% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:356aa long hypothetical dipeptidase; PDBTitle: dipeptidase (ph0974) from pyrococcus horikoshii ot3 Phyre2 PDB 3cb5 chain A Region: 3 - 258 Aligned: 244 Modelled: 249 Confidence: 100.0% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of the s. pombe peptidase homology domain of fact2 complex subunit spt16 (form a) Phyre2 1 d2gg2a1 2 c2g6pA_ 3 c2gz5A_ 4 c3s6bA_ 5 c3tavA_ 6 c3mx6A_ 7 c1yj3A_ 8 d1o0xa_ 9 c1w7vD_ 10 c2oknB_ 11 d1qxya_ 12 c3l24A_ 13 c1chmA_ 14 c2zsgB_ 15 d1chma2 16 c3ig4E_ 17 c1wy2B_ 18 c3q6dA_ 19 c2howB_ 20 c3cb5A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gg2a1 100.0 100 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 2 c2g6pA_ 100.0 47 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: crystal structure of truncated (delta 1-89) human methionine2 aminopeptidase type 1 in complex with pyridyl pyrimidine derivative 3 c2gz5A_ 100.0 47 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: human type 1 methionine aminopeptidase in complex with ovalicin at 1.12 ang 4 c3s6bA_ 100.0 42 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of methionine aminopeptidase 1b from plasmodium2 falciparum, pf10_0150 5 c3tavA_ 100.0 37 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of a methionine aminopeptidase from mycobacterium2 abscessus 6 c3mx6A_ 100.0 52 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of methionine aminopeptidase from rickettsia2 prowazekii bound to methionine 7 c1yj3A_ 100.0 51 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure analysis of product bound methionine2 aminopeptidase type 1c from mycobacterium tuberculosis 8 d1o0xa_ 100.0 43 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 9 c1w7vD_ 100.0 28 PDB header:hydrolase Chain: D: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: znmg substituted aminopeptidase p from e. coli 10 c2oknB_ 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal strcture of human prolidase 11 d1qxya_ 100.0 33 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 12 c3l24A_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of the nerve agent degrading2 organophosphate anhydrolase/prolidase in complex with3 inhibitors 13 c1chmA_ 100.0 18 PDB header:creatinase Chain: A: PDB Molecule:creatine amidinohydrolase; PDBTitle: enzymatic mechanism of creatine amidinohydrolase as deduced2 from crystal structures 14 c2zsgB_ 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:aminopeptidase p, putative; PDBTitle: crystal structure of x-pro aminopeptidase from thermotoga maritima2 msb8 15 d1chma2 100.0 18 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 16 c3ig4E_ 100.0 22 PDB header:hydrolase Chain: E: PDB Molecule:xaa-pro aminopeptidase; PDBTitle: structure of a putative aminopeptidase p from bacillus anthracis 17 c1wy2B_ 100.0 24 PDB header:hydrolase Chain: B: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of the prolidase from pyrococcus horikoshii ot3 18 c3q6dA_ 100.0 27 PDB header:viral protein Chain: A: PDB Molecule:proline dipeptidase; PDBTitle: xaa-pro dipeptidase from bacillus anthracis. 19 c2howB_ 100.0 25 PDB header:hydrolase Chain: B: PDB Molecule:356aa long hypothetical dipeptidase; PDBTitle: dipeptidase (ph0974) from pyrococcus horikoshii ot3 20 c3cb5A_ 100.0 14 PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of the s. pombe peptidase homology domain of fact2 complex subunit spt16 (form a) 21 d1pv9a2 not modelled 100.0 25 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 22 d2v3za2 not modelled 100.0 26 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 23 d1b6aa2 not modelled 100.0 21 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 24 c3ctzA_ not modelled 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro aminopeptidase 1; PDBTitle: structure of human cytosolic x-prolyl aminopeptidase 25 c2v6cA_ not modelled 100.0 23 PDB header:transcription regulator Chain: A: PDB Molecule:proliferation-associated protein 2g4; PDBTitle: crystal structure of erbb3 binding protein 1 (ebp1) 26 c2q8kA_ not modelled 100.0 24 PDB header:transcription Chain: A: PDB Molecule:proliferation-associated protein 2g4; PDBTitle: the crystal structure of ebp1 27 d1xgsa2 not modelled 100.0 31 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 28 c3bitA_ not modelled 100.0 11 PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of yeast spt16 n-terminal domain 29 c1xgnB_ not modelled 100.0 30 PDB header:aminopeptidase Chain: B: PDB Molecule:methionine aminopeptidase; PDBTitle: methionine aminopeptidase from hyperthermophile pyrococcus2 furiosus 30 c1b6aA_ not modelled 100.0 21 PDB header:angiogenesis inhibitor Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: human methionine aminopeptidase 2 complexed with tnp-470 31 c3fm3B_ not modelled 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:methionine aminopeptidase 2; PDBTitle: crystal structure of an encephalitozoon cuniculi methionine2 aminopeptidase type 2 32 c1yw7A_ not modelled 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 2; PDBTitle: h-metap2 complexed with a444148 33 c1kp0B_ not modelled 100.0 17 PDB header:hydrolase Chain: B: PDB Molecule:creatine amidinohydrolase; PDBTitle: the crystal structure analysis of creatine amidinohydrolase2 from actinobacillus 34 d1kp0a2 not modelled 100.0 17 Fold:Creatinase/aminopeptidase Superfamily:Creatinase/aminopeptidase Family:Creatinase/aminopeptidase 35 c3nojA_ not modelled 68.2 23 PDB header:lyase Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida 36 c2c5qE_ not modelled 66.3 16 PDB header:structural genomics,unknown function Chain: E: PDB Molecule:rraa-like protein yer010c; PDBTitle: crystal structure of yeast yer010cp 37 d1wi0a_ not modelled 28.9 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 38 c3innB_ not modelled 27.9 17 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine-ligase in complex2 with atp at low occupancy at 2.1 a resolution 39 d2npta1 not modelled 27.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 40 c3prdA_ not modelled 25.9 29 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 41 d1e4cp_ not modelled 25.7 17 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 42 c2fk5B_ not modelled 24.9 15 PDB header:lyase Chain: B: PDB Molecule:fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from thermus2 thermophilus hb8 43 d1kt0a2 not modelled 24.0 31 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 44 c2l25A_ not modelled 21.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: np_888769.1 45 c3ds8A_ not modelled 20.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 46 c2y0oA_ not modelled 20.3 26 PDB header:isomerase Chain: A: PDB Molecule:probable d-lyxose ketol-isomerase; PDBTitle: the structure of a d-lyxose isomerase from the sigmab2 regulon of bacillus subtilis 47 c2ki0A_ not modelled 19.8 14 PDB header:de novo protein Chain: A: PDB Molecule:ds119; PDBTitle: nmr structure of a de novo designed beta alpha beta 48 c2kw0A_ not modelled 19.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 49 c2hl7A_ not modelled 18.9 23 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 50 c2zyiB_ not modelled 16.6 18 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 51 c2pc9B_ not modelled 16.3 14 PDB header:lyase Chain: B: PDB Molecule:phosphoenolpyruvate carboxykinase [atp]; PDBTitle: crystal structure of atp-dependent phosphoenolpyruvate carboxykinase2 from thermus thermophilus hb8 52 d1ex9a_ not modelled 14.3 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 53 c3mpbA_ not modelled 14.2 19 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 54 c3k4iC_ not modelled 13.6 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000 55 d1l1pa_ not modelled 12.9 35 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 56 c2xs4A_ not modelled 12.9 13 PDB header:hydrolase Chain: A: PDB Molecule:karilysin protease; PDBTitle: structure of karilysin catalytic mmp domain in complex with2 magnesium 57 c2opiB_ not modelled 12.7 20 PDB header:lyase Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron 58 d1cvla_ not modelled 12.6 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 59 d1ii2a1 not modelled 12.5 18 Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain 60 c2vavL_ not modelled 12.5 13 PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak) 61 d1k8qa_ not modelled 12.3 25 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Gastric lipase 62 c3i1iA_ not modelled 11.8 12 PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis 63 d2dsta1 not modelled 10.8 15 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:TTHA1544-like 64 c1ahuB_ not modelled 10.8 22 PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol 65 d1w26a3 not modelled 10.7 21 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 66 c3lp5A_ not modelled 10.7 21 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 67 d4lipd_ not modelled 10.4 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 68 c2k5nA_ not modelled 10.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cold-shock protein; PDBTitle: solution nmr structure of the n-terminal domain of protein2 eca1580 from erwinia carotovora, northeast structural3 genomics consortium target ewr156a 69 d1j3ba1 not modelled 10.1 11 Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain 70 c2irpA_ not modelled 10.0 27 PDB header:lyase Chain: A: PDB Molecule:putative aldolase class 2 protein aq_1979; PDBTitle: crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979)2 from aquifex aeolicus vf5 71 d1tiaa_ not modelled 9.8 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 72 d1m1fa_ not modelled 9.3 12 Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Kid/PemK 73 d2vata1 not modelled 9.2 15 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 74 d1t11a3 not modelled 9.1 30 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 75 d3tgla_ not modelled 9.0 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 76 c3fmyA_ not modelled 9.0 26 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 77 c3ocrA_ not modelled 8.9 10 PDB header:lyase Chain: A: PDB Molecule:class ii aldolase/adducin domain protein; PDBTitle: crystal structure of aldolase ii superfamily protein from pseudomonas2 syringae 78 d2pl5a1 not modelled 8.8 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 79 d1rp1a2 not modelled 8.5 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 80 d1tiba_ not modelled 8.2 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 81 c2gacA_ not modelled 8.1 14 PDB header:hydrolase Chain: A: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 82 d1lgya_ not modelled 8.1 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 83 d1cxva_ not modelled 8.1 19 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 84 c1t3mA_ not modelled 8.0 9 PDB header:hydrolase Chain: A: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 85 d1uwca_ not modelled 7.7 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 86 d1y7ma2 not modelled 7.7 19 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 87 d1hpla2 not modelled 7.7 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 88 c1kt0A_ not modelled 7.7 27 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 89 d1lpbb2 not modelled 7.6 24 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 90 d2olra1 not modelled 7.6 13 Fold:PEP carboxykinase-like Superfamily:PEP carboxykinase-like Family:PEP carboxykinase C-terminal domain 91 c3jr1A_ not modelled 7.5 6 PDB header:transferase Chain: A: PDB Molecule:putative fructosamine-3-kinase; PDBTitle: crystal structure of putative fructosamine-3-kinase2 (yp_719053.1) from haemophilus somnus 129pt at 2.32 a3 resolution 92 d1g6pa_ not modelled 7.3 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 93 c2zakB_ not modelled 7.2 9 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase precursor; PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation 94 c2pplA_ not modelled 7.1 10 PDB header:hydrolase Chain: A: PDB Molecule:pancreatic lipase-related protein 1; PDBTitle: human pancreatic lipase-related protein 1 95 d1etha2 not modelled 7.1 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 96 c2kxxA_ not modelled 6.9 5 PDB header:protein binding Chain: A: PDB Molecule:small protein a; PDBTitle: nmr structure of escherichia coli bame, a lipoprotein component of the2 beta-barrel assembly machinery complex 97 c2gezE_ not modelled 6.8 9 PDB header:hydrolase Chain: E: PDB Molecule:l-asparaginase alpha subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 98 d1tcaa_ not modelled 6.8 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 99 c2k5jB_ not modelled 6.7 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0