PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1wy2B_

Fold library id	PDB Header	Molecule	Title
c1wy2B_	PDB header: hydrolase	Chain: B: PDB Molecule: xaa-pro dipeptidase;	PDBTitle: crystal structure of the prolidase from pyrococcus2 horikoshii ot3

Links to external resources
Added to library: Tue Mar 16 13:02:28 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N E K V K K I I E F M D K N S I D A V L I A K N P N V Y Y I S G A S P L A G G Y I L I T G E S A T L Y V P E L E Y E M A K E E S N I P V E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
S S
S S
G G G
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F K K M D E F Y K A L E G I K S L G I E S S L P Y G F I E E L K K K A N I K E F K K V D D V I R D M R I I K S E K E I K I I E K A C E I A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T
S
T T
T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K A V M A A I E E I T E G K K E R E V A A K V E Y L M K M N G A E K P A F D T I I A S G Y R S A L P H G V A S D K R I E R G D L V V I D L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B T T
S S S
G G G G G S T T
B
S
B
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A L Y Q H Y N S D I T R T I V V G S P N E K Q K E I Y E I V L E A Q K K A V E S A K P G I T A K E L D S I A R N I I A E Y G Y G E Y F N H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T S B T T
G G G
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . .

Sequence L G H G V G L E V H E W P R V S Q Y D E T V L R E G M V I T I E P G I Y I P K I G G V R I E D T I L I T K N G S K R L T K T E R E L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S S S T T
B
T T
T T T
B
S S S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	E	K	V	K	K	I	I	E	F	M	D	K	N	S	I	D	A	V	L	I	A	K	N	P	N	V	Y	Y	I	S	G	A	S	P	L	A	G	G	Y	I	L	I	T	G	E	S	A	T	L	Y	V	P	E	L	E	Y	E	M	A	K	E	E	S	N	I	P	V	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T		S						S									S				S	S								S	S								G	G	G									S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	K	K	M	D	E	F	Y	K	A	L	E	G	I	K	S	L	G	I	E	S	S	L	P	Y	G	F	I	E	E	L	K	K	K	A	N	I	K	E	F	K	K	V	D	D	V	I	R	D	M	R	I	I	K	S	E	K	E	I	K	I	I	E	K	A	C	E	I	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S									T	T		S						T	T																														T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	A	V	M	A	A	I	E	E	I	T	E	G	K	K	E	R	E	V	A	A	K	V	E	Y	L	M	K	M	N	G	A	E	K	P	A	F	D	T	I	I	A	S	G	Y	R	S	A	L	P	H	G	V	A	S	D	K	R	I	E	R	G	D	L	V	V	I	D	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T		B															T	T		S			S	S							G	G	G	G	G	S	T	T		B			S		B			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	Y	Q	H	Y	N	S	D	I	T	R	T	I	V	V	G	S	P	N	E	K	Q	K	E	I	Y	E	I	V	L	E	A	Q	K	K	A	V	E	S	A	K	P	G	I	T	A	K	E	L	D	S	I	A	R	N	I	I	A	E	Y	G	Y	G	E	Y	F	N	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T											S	S																										T	T	S	B															T	T		G	G	G			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Sequence	L	G	H	G	V	G	L	E	V	H	E	W	P	R	V	S	Q	Y	D	E	T	V	L	R	E	G	M	V	I	T	I	E	P	G	I	Y	I	P	K	I	G	G	V	R	I	E	D	T	I	L	I	T	K	N	G	S	K	R	L	T	K	T	E	R	E	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					S	S	S	S	S						S	T	T				B			T	T												T	T	T						B							S	S	S				S	S				S