Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	R	K	S	A	T	G	V	I	V	A	L	A	V	I	W	G	G	G	T	W	Y	T	G	T	Q	I	Q	P	G	V	E	K	F	I	K	D	F	N	D	A	K	K	K	G	E	H	A	Y	D	M	T	L	S	Y	Q	N	F	D
Secondary structure
SS confidence
Disorder		?	?	?																																										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	G	F	F	N	S	R	F	Q	M	Q	M	T	F	D	N	G	A	P	D	L	N	I	K	P	G	Q	K	V	V	F	D	V	D	V	E	H	G	P	L	P	I	T	M	L	M	H	G	N	V	I	P	A	L	A	A	A	K	V	N
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?	?	?																			?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	V	N	N	E	L	T	Q	P	L	F	I	A	A	K	N	K	S	P	V	E	A	T	L	R	F	A	F	G	G	S	F	S	T	T	L	D	V	A	P	A	E	Y	G	K	F	S	F	G	E	G	Q	F	T	F	N	G	D	G	S
Secondary structure
SS confidence
Disorder																																												?	?	?		?	?											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	L	S	N	L	D	I	E	G	K	V	E	D	I	V	L	Q	L	S	P	M	N	K	V	T	A	K	S	F	T	I	D	S	L	A	R	L	E	E	K	K	F	P	V	G	E	S	E	S	K	F	N	Q	I	N	I	I	N	H	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?									?	?	?	?	?	?	?	?									?	?	?	?	?	?	?																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	D	V	A	Q	I	D	A	F	V	A	K	T	R	L	D	R	V	K	D	K	D	Y	I	N	V	N	L	T	Y	E	L	D	K	L	T	K	G	N	Q	Q	L	G	S	G	E	W	S	L	I	A	E	S	I	D	P	S	A	V	R
Secondary structure
SS confidence
Disorder		?	?			?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	F	I	I	Q	Y	N	I	A	M	Q	K	Q	L	A	A	H	P	E	L	A	N	D	E	V	A	L	Q	E	V	N	A	A	L	F	K	E	Y	L	P	L	L	Q	K	S	E	P	T	I	K	Q	P	V	R	W	K	N	A	L	G
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?	?	?	?	?																					?	?	?	?	?	?	?	?	?						?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		E	L	N	A	N	L	D	I	S	I	A	D	P	A	K	S	S	S	S	T	N	K	D	I	K	S	L	N	F	D	V	K	L	P	L	N	V	V	T	E	T	A	K	Q	L	N	L	S	E	G	M	D	A	E	K	A	Q	K	Q	A
Secondary structure
SS confidence
Disorder		?												?	?	?	?	?	?	?						?	?	?	?	?		?	?	?															?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Sequence		D	K	Q	I	S	G	M	M	T	L	G	Q	M	F	Q	L	I	T	I	D	N	N	T	A	S	L	Q	L	R	Y	T	P	G	K	V	V	F	N	G	Q	E	M	S	E	E	E	F	M	S	R	A	G	R	F	V	H
Secondary structure
SS confidence
Disorder														?	?	?																			?																					?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1j20 chain A domain 2 Region: 445 - 472 Aligned: 28 Modelled: 28 Confidence: 38.9% Identity: 21% Fold: Argininosuccinate synthetase, C-terminal domain Superfamily: Argininosuccinate synthetase, C-terminal domain Family: Argininosuccinate synthetase, C-terminal domain Phyre2 PDB 1nvp chain C Region: 447 - 463 Aligned: 17 Modelled: 17 Confidence: 26.0% Identity: 18% PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex Phyre2 PDB 1nvp chain C Region: 447 - 463 Aligned: 17 Modelled: 17 Confidence: 26.0% Identity: 18% Fold: Transcription factor IIA (TFIIA), beta-barrel domain Superfamily: Transcription factor IIA (TFIIA), beta-barrel domain Family: Transcription factor IIA (TFIIA), beta-barrel domain Phyre2 PDB 1nh2 chain C Region: 447 - 463 Aligned: 17 Modelled: 17 Confidence: 25.4% Identity: 18% PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex Phyre2 PDB 1nh2 chain C Region: 447 - 463 Aligned: 17 Modelled: 17 Confidence: 25.4% Identity: 18% Fold: Transcription factor IIA (TFIIA), beta-barrel domain Superfamily: Transcription factor IIA (TFIIA), beta-barrel domain Family: Transcription factor IIA (TFIIA), beta-barrel domain Phyre2 PDB 3ipf chain A Region: 433 - 460 Aligned: 28 Modelled: 28 Confidence: 24.0% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. Phyre2 PDB 3oba chain A Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 23.7% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis Phyre2 PDB 2pfu chain A Region: 451 - 471 Aligned: 21 Modelled: 21 Confidence: 22.6% Identity: 5% PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli Phyre2 PDB 1k92 chain A domain 2 Region: 446 - 472 Aligned: 27 Modelled: 27 Confidence: 22.6% Identity: 33% Fold: Argininosuccinate synthetase, C-terminal domain Superfamily: Argininosuccinate synthetase, C-terminal domain Family: Argininosuccinate synthetase, C-terminal domain Phyre2 PDB 1bhg chain B Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 21.5% Identity: 19% PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution Phyre2 PDB 3mv1 chain 4 Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 21.0% Identity: 25% PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium Phyre2 PDB 1jz6 chain C Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 20.7% Identity: 25% PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole Phyre2 PDB 3lpg chain A Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 20.4% Identity: 6% PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea Phyre2 PDB 1yq2 chain C Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 19.4% Identity: 19% PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) Phyre2 PDB 2g82 chain A domain 1 Region: 447 - 464 Aligned: 18 Modelled: 18 Confidence: 19.1% Identity: 11% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 3bga chain B Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 19.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 Phyre2 PDB 1obf chain O domain 1 Region: 447 - 464 Aligned: 18 Modelled: 18 Confidence: 19.0% Identity: 17% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 1vc2 chain A domain 1 Region: 447 - 464 Aligned: 18 Modelled: 18 Confidence: 18.8% Identity: 11% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 6pax chain A domain 1 Region: 453 - 466 Aligned: 14 Modelled: 14 Confidence: 18.2% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 1ytf chain C Region: 447 - 462 Aligned: 16 Modelled: 16 Confidence: 18.1% Identity: 19% Fold: Transcription factor IIA (TFIIA), beta-barrel domain Superfamily: Transcription factor IIA (TFIIA), beta-barrel domain Family: Transcription factor IIA (TFIIA), beta-barrel domain Phyre2 1 d1j20a2 2 c1nvpC_ 3 d1nvpc_ 4 c1nh2C_ 5 d1nh2c_ 6 c3ipfA_ 7 c3obaA_ 8 c2pfuA_ 9 d1k92a2 10 c1bhgB_ 11 c3mv14_ 12 c1jz6C_ 13 c3lpgA_ 14 c1yq2C_ 15 d2g82a1 16 c3bgaB_ 17 d1obfo1 18 d1vc2a1 19 d6paxa1 20 d1ytfc_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1j20a2 38.9 21 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 2 c1nvpC_ 26.0 18 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex 3 d1nvpc_ 26.0 18 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 4 c1nh2C_ 25.4 18 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 5 d1nh2c_ 25.4 18 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 6 c3ipfA_ 24.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. 7 c3obaA_ 23.7 25 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 8 c2pfuA_ 22.6 5 PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli 9 d1k92a2 22.6 33 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 10 c1bhgB_ 21.5 19 PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution 11 c3mv14_ 21.0 25 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 12 c1jz6C_ 20.7 25 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 13 c3lpgA_ 20.4 6 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 14 c1yq2C_ 19.4 19 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) 15 d2g82a1 19.1 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 16 c3bgaB_ 19.0 19 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 17 d1obfo1 19.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 18 d1vc2a1 18.8 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 19 d6paxa1 18.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 20 d1ytfc_ 18.1 19 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 21 d1hdgo1 not modelled 16.9 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 22 c1k97A_ not modelled 16.4 33 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 23 d2b4ro1 not modelled 16.3 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 24 d1gado1 not modelled 14.8 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 25 d1k78a1 not modelled 13.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 26 d1d6za4 not modelled 12.7 22 Fold:N domain of copper amine oxidase-like Superfamily:Copper amine oxidase, domain N Family:Copper amine oxidase, domain N 27 c1rm1C_ not modelled 12.3 19 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia large chain; PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex 28 c3mhaB_ not modelled 11.9 83 PDB header:lipid binding protein Chain: B: PDB Molecule:lipoprotein lprg; PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim 29 d1u8fo1 not modelled 11.6 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 30 d1dk7a_ not modelled 11.2 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 31 d1zud21 not modelled 10.6 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 32 d2caya1 not modelled 10.3 21 Fold:PH domain-like barrel Superfamily:PH domain-like Family:VPS36 N-terminal domain-like 33 d1oela2 not modelled 10.2 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 34 c2w7vB_ not modelled 10.1 11 PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus 35 c3cmgA_ not modelled 10.0 22 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 36 c1ifpA_ not modelled 9.9 32 PDB header:virus Chain: A: PDB Molecule:major coat protein assembly; PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly 37 d1k8ba_ not modelled 9.8 7 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 38 d3cmco1 not modelled 9.3 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 39 d3gpdg1 not modelled 8.9 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 40 d1yqea1 not modelled 8.6 15 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 41 d2odgc1 not modelled 8.4 50 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 42 d1dssg1 not modelled 8.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 43 d1j0xo1 not modelled 7.8 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 44 d1srva_ not modelled 7.6 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 45 c1tygG_ not modelled 7.5 17 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 46 c1kh2D_ not modelled 7.4 21 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 47 c2jv8A_ not modelled 7.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ne1242; PDBTitle: solution structure of protein ne1242 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net4 48 d1dm9a_ not modelled 7.2 46 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 49 c1dm9A_ not modelled 7.2 46 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 50 c3bbnI_ not modelled 7.1 27 PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein s9; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 51 d2vqei1 not modelled 7.1 55 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 52 c3m6cA_ not modelled 6.9 56 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 1; PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain 53 c2gfqC_ not modelled 6.8 19 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 54 c2kd2A_ not modelled 6.7 26 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: nmr structure of faim-ctd 55 d1sjpa2 not modelled 6.6 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 56 d1x87a_ not modelled 6.6 27 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 57 c2cqjA_ not modelled 6.6 15 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 58 c3fn9B_ not modelled 6.5 28 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 59 c2jtxA_ not modelled 6.5 20 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor iie subunit PDBTitle: nmr structure of the tfiie-alpha carboxyl terminus 60 d2gy9i1 not modelled 6.4 36 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 61 c3em0A_ not modelled 6.4 9 PDB header:lipid binding protein Chain: A: PDB Molecule:ileal bile acid-binding protein; PDBTitle: crystal structure of zebrafish ileal bile acid-bindin protein2 complexed with cholic acid (crystal form b). 62 d1sjpa3 not modelled 6.3 13 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 63 c2dw3A_ not modelled 6.2 30 PDB header:photosynthesis Chain: A: PDB Molecule:intrinsic membrane protein pufx; PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein 64 d1tygb_ not modelled 6.1 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 65 d1ffva2 not modelled 6.1 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 66 d1kh0a_ not modelled 6.1 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 67 c2zkqi_ not modelled 6.1 27 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 68 d1we3a2 not modelled 6.1 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 69 d1v6ga2 not modelled 6.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 70 d1gxqa_ not modelled 5.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 71 d1vioa2 not modelled 5.9 10 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 72 c2rnqA_ not modelled 5.9 31 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor iie subunit PDBTitle: solution structure of the c-terminal acidic domain of tfiie2 alpha 73 d2cu3a1 not modelled 5.9 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 74 c2jwlB_ not modelled 5.9 19 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 75 c3ci0K_ not modelled 5.8 11 PDB header:protein transport Chain: K: PDB Molecule:pseudopilin gspk; PDBTitle: the crystal structure of the gspk-gspi-gspj complex from2 enterotoxigenic escherichia coli type 2 secretion system 76 c2k6xA_ not modelled 5.8 27 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 77 c2yglA_ not modelled 5.7 24 PDB header:hydrolase Chain: A: PDB Molecule:blood group a-and b-cleaving endo-beta-galactosidase; PDBTitle: the x-ray crystal structure of tandem cbm51 modules of sp3gh98, the2 family 98 glycoside hydrolase from streptococcus pneumoniae3 sp3-bs71 78 d1kida_ not modelled 5.6 38 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 79 d1z45a1 not modelled 5.6 19 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 80 d2pkqo1 not modelled 5.6 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 81 c3bmaC_ not modelled 5.5 11 PDB header:ligase Chain: C: PDB Molecule:d-alanyl-lipoteichoic acid synthetase; PDBTitle: crystal structure of d-alanyl-lipoteichoic acid synthetase from2 streptococcus pneumoniae r6 82 d2gfqa1 not modelled 5.5 19 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 83 c3sy6A_ not modelled 5.4 11 PDB header:cell adhesion Chain: A: PDB Molecule:fimbrial protein bf1861; PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution 84 d1dgja2 not modelled 5.3 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 85 d1rm6c2 not modelled 5.3 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 86 c2jzyA_ not modelled 5.1 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein pcor; PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae 87 d2cfua1 not modelled 5.1 14 Fold:SCP-like Superfamily:SCP-like Family:Alkylsulfatase C-terminal domain-like 88 c2wj7D_ not modelled 5.0 32 PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0