Secondary structure and disorder prediction

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Sequence		M	D	A	L	E	L	L	I	N	R	R	S	A	S	R	L	A	E	P	A	P	T	G	E	Q	L	Q	N	I	L	R	A	G	M	R	A	P	D	H	K	S	M	Q	P	W	H	F	F	V	I	E	G	E	G	R	E	R	F	S	A
Secondary structure
SS confidence
Disorder		?	?													?				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	E	Q	G	A	I	A	A	G	S	D	D	K	A	I	D	K	A	R	N	A	P	F	R	A	P	L	I	I	T	V	V	A	K	C	E	E	N	H	K	V	P	R	W	E	Q	E	M	S	A	G	C	A	V	M	A	M	Q	M
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	A	V	A	Q	G	F	G	G	I	W	R	S	G	A	L	T	E	S	P	V	V	R	E	A	F	G	C	R	E	Q	D	K	I	V	G	F	L	Y	L	G	T	P	Q	L	K	A	S	T	S	I	N	V	P	D	P	T	P	F	V
Secondary structure
SS confidence
Disorder																																																?	?	?	?	?	?	?
Disorder confidence
		.	.	.
Sequence		T	Y	F
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3k6h chain B Region: 1 - 182 Aligned: 181 Modelled: 182 Confidence: 100.0% Identity: 31% PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58 Phyre2 PDB 2ifa chain A domain 1 Region: 2 - 183 Aligned: 181 Modelled: 182 Confidence: 100.0% Identity: 15% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1zch chain A domain 1 Region: 1 - 182 Aligned: 167 Modelled: 168 Confidence: 100.0% Identity: 22% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 2i7h chain E Region: 2 - 183 Aligned: 179 Modelled: 181 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: E: PDB Molecule:nitroreductase-like family protein; PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus Phyre2 PDB 1f5v chain A Region: 1 - 182 Aligned: 167 Modelled: 168 Confidence: 100.0% Identity: 15% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3n2s chain D Region: 2 - 182 Aligned: 166 Modelled: 167 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis Phyre2 PDB 3gr3 chain B Region: 1 - 183 Aligned: 178 Modelled: 182 Confidence: 100.0% Identity: 17% PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution Phyre2 PDB 1bkj chain A Region: 2 - 182 Aligned: 166 Modelled: 167 Confidence: 100.0% Identity: 20% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3eof chain B Region: 5 - 182 Aligned: 177 Modelled: 178 Confidence: 100.0% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution Phyre2 PDB 1ywq chain A domain 1 Region: 1 - 183 Aligned: 182 Modelled: 183 Confidence: 100.0% Identity: 17% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3eo8 chain A Region: 2 - 183 Aligned: 181 Modelled: 182 Confidence: 100.0% Identity: 18% PDB header:flavoprotein Chain: A: PDB Molecule:blub-like flavoprotein; PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution Phyre2 PDB 3pxv chain D Region: 2 - 183 Aligned: 174 Modelled: 181 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: D: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution Phyre2 PDB 2wzv chain B Region: 1 - 182 Aligned: 176 Modelled: 170 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis Phyre2 PDB 2wqf chain A Region: 2 - 182 Aligned: 181 Modelled: 181 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:copper induced nitroreductase d; PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn Phyre2 PDB 2isl chain B Region: 1 - 182 Aligned: 180 Modelled: 182 Confidence: 100.0% Identity: 22% PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form) Phyre2 PDB 3gh8 chain A Region: 1 - 182 Aligned: 180 Modelled: 182 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit) Phyre2 PDB 1nox chain A Region: 1 - 182 Aligned: 165 Modelled: 168 Confidence: 100.0% Identity: 25% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3ek3 chain A Region: 2 - 182 Aligned: 174 Modelled: 181 Confidence: 100.0% Identity: 23% PDB header:flavoprotein Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution Phyre2 PDB 2hay chain D Region: 1 - 182 Aligned: 167 Modelled: 169 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas Phyre2 PDB 3kwk chain A Region: 1 - 182 Aligned: 161 Modelled: 168 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution Phyre2 1 c3k6hB_ 2 d2ifaa1 3 d1zcha1 4 c2i7hE_ 5 d1f5va_ 6 c3n2sD_ 7 c3gr3B_ 8 d1bkja_ 9 c3eofB_ 10 d1ywqa1 11 c3eo8A_ 12 c3pxvD_ 13 c2wzvB_ 14 c2wqfA_ 15 c2islB_ 16 c3gh8A_ 17 d1noxa_ 18 c3ek3A_ 19 c2hayD_ 20 c3kwkA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3k6hB_ 100.0 31 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58 2 d2ifaa1 100.0 15 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 3 d1zcha1 100.0 22 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 4 c2i7hE_ 100.0 23 PDB header:oxidoreductase Chain: E: PDB Molecule:nitroreductase-like family protein; PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus 5 d1f5va_ 100.0 15 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 6 c3n2sD_ 100.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis 7 c3gr3B_ 100.0 17 PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution 8 d1bkja_ 100.0 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 9 c3eofB_ 100.0 11 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution 10 d1ywqa1 100.0 17 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 11 c3eo8A_ 100.0 18 PDB header:flavoprotein Chain: A: PDB Molecule:blub-like flavoprotein; PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution 12 c3pxvD_ 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution 13 c2wzvB_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis 14 c2wqfA_ 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:copper induced nitroreductase d; PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn 15 c2islB_ 100.0 22 PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form) 16 c3gh8A_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit) 17 d1noxa_ 100.0 25 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 18 c3ek3A_ 100.0 23 PDB header:flavoprotein Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution 19 c2hayD_ 100.0 19 PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas 20 c3kwkA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution 21 c3bemA_ not modelled 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution 22 c3ge6B_ not modelled 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution 23 c3gbhC_ not modelled 100.0 17 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution 24 c3gagB_ not modelled 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution 25 c3ge5A_ not modelled 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution 26 d2b67a1 not modelled 100.0 21 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 27 c3koqC_ not modelled 100.0 19 PDB header:oxidoreductase Chain: C: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution 28 d1vfra_ not modelled 100.0 16 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 29 c3gfaB_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (cd3205) from clostridium difficile 630 at 1.35 a resolution 30 d1ykia1 not modelled 100.0 19 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 31 c3e10B_ not modelled 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh oxidase; PDBTitle: crystal structure of putative nadh oxidase (np_348178.1)2 from clostridium acetobutylicum at 1.40 a resolution 32 d2frea1 not modelled 100.0 18 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 33 c3m5kA_ not modelled 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution 34 c2h0uA_ not modelled 100.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori 35 d1kqba_ not modelled 100.0 22 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 36 c3e39A_ not modelled 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution 37 c3of4A_ not modelled 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution 38 c3g14B_ not modelled 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution 39 c2r01A_ not modelled 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution 40 c3bm2B_ not modelled 100.0 91 PDB header:oxidoreductase Chain: B: PDB Molecule:protein ydja; PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor 41 c3hj9A_ not modelled 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution 42 c3hoiA_ not modelled 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017; PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution 43 c3eo7A_ not modelled 99.9 18 PDB header:flavoprotein Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution 44 d1vkwa_ not modelled 99.9 22 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:Putative nitroreductase TM1586 45 d1oeyj_ not modelled 36.7 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 46 d2oc6a1 not modelled 19.6 8 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 47 c3gyxJ_ not modelled 19.1 11 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 48 d1fs2b1 not modelled 15.9 18 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 49 c2p1nD_ not modelled 14.7 14 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 50 c1nexC_ not modelled 14.4 17 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 51 d2ovra1 not modelled 13.7 17 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 52 c2ovqA_ not modelled 13.6 17 PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 53 d1cr6a1 not modelled 12.9 14 Fold:HAD-like Superfamily:HAD-like Family:YihX-like 54 d2ogga1 not modelled 12.6 10 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 55 c2ds2B_ not modelled 12.1 18 PDB header:plant protein Chain: B: PDB Molecule:sweet protein mabinlin-2 chain b; PDBTitle: crystal structure of mabinlin ii 56 d1zd3a1 not modelled 11.5 16 Fold:HAD-like Superfamily:HAD-like Family:YihX-like 57 d1nexa1 not modelled 11.5 17 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 58 d3ddva1 not modelled 10.2 14 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 59 c3io0A_ not modelled 7.8 8 PDB header:structural protein Chain: A: PDB Molecule:etub protein; PDBTitle: crystal structure of etub from clostridium kluyveri 60 d2p19a1 not modelled 7.6 17 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 61 c1pnbB_ not modelled 7.3 20 PDB header:seed storage protein Chain: B: PDB Molecule:napin bnib; PDBTitle: structure of napin bnib, nmr, 10 structures 62 d3cnva1 not modelled 7.1 10 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 63 c3hfiA_ not modelled 6.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative regulator; PDBTitle: the crystal structure of the putative regulator from escherichia coli2 cft073 64 d2ooia1 not modelled 6.7 10 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 65 d2pkha1 not modelled 6.7 14 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 66 d2ikka1 not modelled 6.4 10 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 67 c3f8lC_ not modelled 6.2 10 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional repressor phnf; PDBTitle: crystal structure of the effector domain of phnf from mycobacterium2 smegmatis 68 d3bwga2 not modelled 6.1 10 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain 69 c2glwA_ not modelled 5.5 21 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 70 c1sm7A_ not modelled 5.3 22 PDB header:plant protein Chain: A: PDB Molecule:recombinant ib pronapin; PDBTitle: solution structure of the recombinant pronapin precursor,2 bnib.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0