Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	I	Y	A	F	N	K	R	L	M	E	Y	F	M	K	G	K	S	A	L	T	L	L	L	A	G	I	F	S	C	G	T	C	Q	A	T	G	A	E	V	T	S	E	S	V	F	N	I	L	N	S	T	G	A	A	T	D	K	S
Secondary structure
SS confidence
Disorder		?	?			?																																?	?	?													?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	L	S	L	N	P	D	K	Y	P	N	Y	R	L	L	I	H	S	A	K	L	Q	N	E	I	K	S	H	Y	T	K	D	E	I	Q	G	L	L	T	L	T	E	N	T	R	K	L	T	L	T	E	K	P	W	G	T	F	I	L	A
Secondary structure
SS confidence
Disorder																											?	?																											?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	T	F	E	D	D	K	T	A	A	E	T	H	Y	D	A	V	W	L	R	D	S	L	W	G	Y	M	A	L	V	S	D	Q	G	N	S	V	A	A	K	K	V	L	L	T	L	W	D	Y	M	S	T	P	D	Q	I	K	R	M	Q
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?			?	?																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	V	I	S	N	P	K	R	L	D	G	I	P	V	Q	M	N	A	V	H	I	R	F	D	S	N	S	P	V	M	A	D	V	Q	E	E	G	K	P	Q	L	W	N	H	K	Q	N	D	A	L	G	L	Y	L	D	L	L	I	Q	A
Secondary structure
SS confidence
Disorder					?		?	?	?	?	?		?																	?					?		?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Sequence		I	N	T	G	T	I	N	A	E	D	W	Q	K	G	D	R	L	K	S	V	A	L	L	I	A	Y	L	D	K	A	N	F	Y	V	M	E	D	S
Secondary structure
SS confidence
Disorder					?			?	?	?	?	?	?	?																					?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ulv chain A domain 1 Region: 92 - 277 Aligned: 142 Modelled: 156 Confidence: 97.3% Identity: 25% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Bacterial glucoamylase C-terminal domain-like Phyre2 PDB 1lf6 chain A domain 1 Region: 106 - 278 Aligned: 126 Modelled: 142 Confidence: 97.3% Identity: 19% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Bacterial glucoamylase C-terminal domain-like Phyre2 PDB 2fba chain A domain 1 Region: 115 - 237 Aligned: 111 Modelled: 119 Confidence: 95.4% Identity: 16% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Glucoamylase Phyre2 PDB 1lf6 chain A Region: 111 - 263 Aligned: 115 Modelled: 120 Confidence: 94.9% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: crystal structure of bacterial glucoamylase Phyre2 PDB 1gai chain A Region: 108 - 277 Aligned: 143 Modelled: 170 Confidence: 94.1% Identity: 19% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Glucoamylase Phyre2 PDB 2vn4 chain A Region: 115 - 277 Aligned: 137 Modelled: 151 Confidence: 93.4% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea2 jecorina Phyre2 PDB 1ug9 chain A Region: 115 - 174 Aligned: 59 Modelled: 60 Confidence: 62.8% Identity: 36% PDB header:hydrolase Chain: A: PDB Molecule:glucodextranase; PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42 Phyre2 PDB 2jnh chain A Region: 78 - 103 Aligned: 26 Modelled: 26 Confidence: 37.3% Identity: 23% PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b Phyre2 PDB 2ov2 chain O Region: 183 - 222 Aligned: 29 Modelled: 40 Confidence: 36.5% Identity: 34% PDB header:protein binding/transferase Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4) Phyre2 PDB 2ae3 chain A Region: 186 - 237 Aligned: 45 Modelled: 52 Confidence: 33.5% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:glutaryl 7-aminocephalosporanic acid acylase; PDBTitle: glutaryl 7-aminocephalosporanic acid acylase: mutational study of2 activation mechanism Phyre2 PDB 2odb chain B Region: 183 - 222 Aligned: 29 Modelled: 40 Confidence: 32.0% Identity: 34% PDB header:protein binding Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6; PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6) Phyre2 PDB 2lio chain A Region: 166 - 178 Aligned: 13 Modelled: 13 Confidence: 31.8% Identity: 38% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of bfr322 from bacteroides fragilis, northeast2 structural genomics consortium target bfr322 Phyre2 PDB 2ixn chain A domain 1 Region: 233 - 272 Aligned: 40 Modelled: 40 Confidence: 29.4% Identity: 13% Fold: PTPA-like Superfamily: PTPA-like Family: PTPA-like Phyre2 PDB 2g7o chain A domain 1 Region: 5 - 26 Aligned: 22 Modelled: 22 Confidence: 29.3% Identity: 36% Fold: TraM-like Superfamily: TraM-like Family: TraM-like Phyre2 PDB 2pp6 chain A domain 1 Region: 216 - 222 Aligned: 7 Modelled: 7 Confidence: 28.8% Identity: 71% Fold: Phage tail proteins Superfamily: Phage tail proteins Family: gpFII-like Phyre2 PDB 1e0a chain B Region: 183 - 222 Aligned: 29 Modelled: 40 Confidence: 28.5% Identity: 31% PDB header:signalling protein Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase Phyre2 PDB 2do6 chain A Region: 78 - 103 Aligned: 26 Modelled: 26 Confidence: 25.8% Identity: 23% PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna Phyre2 PDB 2d9s chain A Region: 78 - 103 Aligned: 26 Modelled: 26 Confidence: 25.4% Identity: 23% PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna Phyre2 PDB 2d5x chain B domain 1 Region: 159 - 244 Aligned: 81 Modelled: 86 Confidence: 25.3% Identity: 14% Fold: Globin-like Superfamily: Globin-like Family: Globins Phyre2 PDB 1oj6 chain A Region: 176 - 244 Aligned: 69 Modelled: 69 Confidence: 24.0% Identity: 12% Fold: Globin-like Superfamily: Globin-like Family: Globins Phyre2 1 d1ulva1 2 d1lf6a1 3 d2fbaa1 4 c1lf6A_ 5 d1gaia_ 6 c2vn4A_ 7 c1ug9A_ 8 c2jnhA_ 9 c2ov2O_ 10 c2ae3A_ 11 c2odbB_ 12 c2lioA_ 13 d2ixna1 14 d2g7oa1 15 d2pp6a1 16 c1e0aB_ 17 c2do6A_ 18 c2d9sA_ 19 d2d5xb1 20 d1oj6a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ulva1 97.3 25 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Bacterial glucoamylase C-terminal domain-like 2 d1lf6a1 97.3 19 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Bacterial glucoamylase C-terminal domain-like 3 d2fbaa1 95.4 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glucoamylase 4 c1lf6A_ 94.9 22 PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: crystal structure of bacterial glucoamylase 5 d1gaia_ 94.1 19 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glucoamylase 6 c2vn4A_ 93.4 18 PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea2 jecorina 7 c1ug9A_ 62.8 36 PDB header:hydrolase Chain: A: PDB Molecule:glucodextranase; PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42 8 c2jnhA_ 37.3 23 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 9 c2ov2O_ 36.5 34 PDB header:protein binding/transferase Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4) 10 c2ae3A_ 33.5 11 PDB header:hydrolase Chain: A: PDB Molecule:glutaryl 7-aminocephalosporanic acid acylase; PDBTitle: glutaryl 7-aminocephalosporanic acid acylase: mutational study of2 activation mechanism 11 c2odbB_ 32.0 34 PDB header:protein binding Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6; PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6) 12 c2lioA_ 31.8 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of bfr322 from bacteroides fragilis, northeast2 structural genomics consortium target bfr322 13 d2ixna1 29.4 13 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 14 d2g7oa1 29.3 36 Fold:TraM-like Superfamily:TraM-like Family:TraM-like 15 d2pp6a1 28.8 71 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 16 c1e0aB_ 28.5 31 PDB header:signalling protein Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase 17 c2do6A_ 25.8 23 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 18 c2d9sA_ 25.4 23 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 19 d2d5xb1 25.3 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 20 d1oj6a_ 24.0 12 Fold:Globin-like Superfamily:Globin-like Family:Globins 21 d1wmub_ not modelled 23.0 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 22 c3k3wA_ not modelled 22.5 16 PDB header:hydrolase Chain: A: PDB Molecule:penicillin g acylase; PDBTitle: thermostable penicillin g acylase from alcaligence faecalis2 in orthorhombic form 23 d1fhjb_ not modelled 22.3 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 24 d1cg5b_ not modelled 22.2 10 Fold:Globin-like Superfamily:Globin-like Family:Globins 25 d1qpwb_ not modelled 21.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 26 c2z07A_ not modelled 21.8 32 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ttha0978; PDBTitle: crystal structure of uncharacterized conserved protein from2 thermus thermophilus hb8 27 c3bomC_ not modelled 20.2 13 PDB header:oxygen storage/transport Chain: C: PDB Molecule:hemoglobin subunit alpha-4; PDBTitle: crystal structure of trout hemoglobin at 1.35 angstrom2 resolution 28 d2dn3b1 not modelled 20.2 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 29 d1a4fb_ not modelled 19.3 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 30 c1ceeB_ not modelled 18.7 13 PDB header:structural protein regulation Chain: B: PDB Molecule:wiskott-aldrich syndrome protein wasp; PDBTitle: solution structure of cdc42 in complex with the gtpase2 binding domain of wasp 31 c2cqtA_ not modelled 18.3 15 PDB header:transferase Chain: A: PDB Molecule:cellobiose phosphorylase; PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate 32 d2eppa1 not modelled 18.0 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 33 d1shrb_ not modelled 17.1 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 34 d3bj1b1 not modelled 16.6 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 35 c2zs1D_ not modelled 16.4 14 PDB header:oxygen storage, oxygen transport Chain: D: PDB Molecule:extracellular giant hemoglobin major globin subunit b1; PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin 36 d2ixma1 not modelled 16.3 14 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 37 c1oqzB_ not modelled 15.7 11 PDB header:hydrolase Chain: B: PDB Molecule:glutaryl acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 insight into autoproteolytic activation 38 d2aa1b1 not modelled 15.5 10 Fold:Globin-like Superfamily:Globin-like Family:Globins 39 c1cp9A_ not modelled 15.3 11 PDB header:hydrolase Chain: A: PDB Molecule:penicillin amidohydrolase; PDBTitle: crystal structure of penicillin g acylase from the bro12 mutant strain of providencia rettgeri 40 c1k3rA_ not modelled 15.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 41 d2qssb1 not modelled 14.9 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 42 d1u9da_ not modelled 14.6 33 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:VC0714-like 43 d1fqva1 not modelled 14.5 88 Fold:F-box domain Superfamily:F-box domain Family:F-box domain 44 c3s1jC_ not modelled 14.5 13 PDB header:oxygen transport, oxygen storage Chain: C: PDB Molecule:hemoglobin-like flavoprotein; PDBTitle: crystal structure of acetate-bound hell's gate globin i 45 c2g62A_ not modelled 13.8 14 PDB header:hydrolase activator Chain: A: PDB Molecule:protein phosphatase 2a, regulatory subunit b' (pr 53); PDBTitle: crystal structure of human ptpa 46 d1hbga_ not modelled 13.5 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 47 c2v5jB_ not modelled 13.2 14 PDB header:lyase Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PDBTitle: apo class ii aldolase hpch 48 d1h5wa_ not modelled 13.2 21 Fold:Upper collar protein gp10 (connector protein) Superfamily:Upper collar protein gp10 (connector protein) Family:Upper collar protein gp10 (connector protein) 49 d1dxea_ not modelled 12.8 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase 50 d1i3da_ not modelled 12.8 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 51 d3dtoa1 not modelled 12.3 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 52 c1yhuX_ not modelled 12.3 12 PDB header:oxygen storage/transport Chain: X: PDB Molecule:hemoglobin b2 chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 53 c1f3mB_ not modelled 12.2 29 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: crystal structure of human serine/threonine kinase pak1 54 d1hdsa_ not modelled 12.1 12 Fold:Globin-like Superfamily:Globin-like Family:Globins 55 c3eu8D_ not modelled 12.1 17 PDB header:hydrolase Chain: D: PDB Molecule:putative glucoamylase; PDBTitle: crystal structure of putative glucoamylase (yp_210071.1) from2 bacteroides fragilis nctc 9343 at 2.12 a resolution 56 d2ixoa1 not modelled 11.9 9 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 57 c2wybA_ not modelled 11.9 16 PDB header:hydrolase Chain: A: PDB Molecule:acyl-homoserine lactone acylase pvdq subunit PDBTitle: the quorum quenching n-acyl homoserine lactone acylase pvdq2 with a covalently bound dodecanoic acid 58 d1gph11 not modelled 11.7 25 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 59 c2gl7C_ not modelled 11.3 33 PDB header:transcription Chain: C: PDB Molecule:b-cell lymphoma 9 protein; PDBTitle: crystal structure of a beta-catenin/bcl9/tcf4 complex 60 d1hdsb_ not modelled 11.2 11 Fold:Globin-like Superfamily:Globin-like Family:Globins 61 c1cfgA_ not modelled 11.0 67 PDB header:coagulation factor Chain: A: PDB Molecule:coagulation factor viii; PDBTitle: membrane-binding peptide from the c2 domain of factor viii2 forms an amphipathic structure as determined by nmr3 spectroscopy 62 d2d5xa1 not modelled 10.9 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 63 d1spgb_ not modelled 10.8 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 64 c2e67D_ not modelled 10.3 21 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein tthb029; PDBTitle: crystal structure of the hypothetical protein tthb029 from thermus2 thermophilus hb8 65 d1jl6a_ not modelled 10.1 13 Fold:Globin-like Superfamily:Globin-like Family:Globins 66 d2bt6a1 not modelled 10.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 67 c1ajnA_ not modelled 9.8 13 PDB header:antibiotic resistance Chain: A: PDB Molecule:penicillin amidohydrolase; PDBTitle: penicillin acylase complexed with p-nitrophenylacetic acid 68 c1gph1_ not modelled 9.6 25 PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis 69 d1izca_ not modelled 9.6 27 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase 70 c1izcA_ not modelled 9.6 27 PDB header:lyase Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase; PDBTitle: crystal structure analysis of macrophomate synthase 71 d1ecfa1 not modelled 9.4 21 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 72 d1a4fa_ not modelled 9.4 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 73 d2dlqa3 not modelled 9.4 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 74 c3on0D_ not modelled 9.3 25 PDB header:dna binding protein/dna Chain: D: PDB Molecule:protein tram; PDBTitle: crystal structure of the ped208 tram-sbma complex 75 c3qz6A_ not modelled 9.3 24 PDB header:lyase Chain: A: PDB Molecule:hpch/hpai aldolase; PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2 76 d1qpwa_ not modelled 9.2 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 77 d1spga_ not modelled 9.2 10 Fold:Globin-like Superfamily:Globin-like Family:Globins 78 c2pohA_ not modelled 9.1 27 PDB header:viral protein Chain: A: PDB Molecule:head completion protein; PDBTitle: structure of phage p22 tail needle gp26 79 c2i7gA_ not modelled 8.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens 80 d1b0ba_ not modelled 8.6 13 Fold:Globin-like Superfamily:Globin-like Family:Globins 81 d2bl8a1 not modelled 8.6 21 Fold:Bromodomain-like Superfamily:Bacteriocin immunity protein-like Family:EntA-Im 82 d1seda_ not modelled 8.6 26 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI 83 c3pt8B_ not modelled 8.6 7 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin iii; PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0 84 d1k3ra2 not modelled 8.5 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 85 c1ijgE_ not modelled 8.4 18 PDB header:viral protein Chain: E: PDB Molecule:upper collar protein; PDBTitle: structure of the bacteriophage phi29 head-tail connector2 protein 86 c3bq4G_ not modelled 8.4 18 PDB header:viral protein Chain: G: PDB Molecule:fiber; PDBTitle: crystal structure of ad35 fiber knob 87 c2vwtA_ not modelled 8.3 24 PDB header:lyase Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase; PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex 88 c2d2mC_ not modelled 7.9 17 PDB header:oxygen storage/transport Chain: C: PDB Molecule:giant hemoglobin, b2(c) globin chain; PDBTitle: structure of an extracellular giant hemoglobin of the2 gutless beard worm oligobrachia mashikoi 89 d5pnta_ not modelled 7.8 6 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 90 d1luca_ not modelled 7.7 33 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 91 d2h8fb1 not modelled 7.7 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 92 c2cwdA_ not modelled 7.6 18 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8 93 c2dafA_ not modelled 7.6 67 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:flj35834 protein; PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human hypothetical protein flj35834 94 c3h87D_ not modelled 7.5 24 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 95 d1v4wb_ not modelled 7.4 11 Fold:Globin-like Superfamily:Globin-like Family:Globins 96 c3if4C_ not modelled 7.4 33 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:integron cassette protein hfx_cass5; PDBTitle: structure from the mobile metagenome of north west arm2 sewage outfall: integron cassette protein hfx_cass5 97 c2b81D_ not modelled 7.2 40 PDB header:oxidoreductase Chain: D: PDB Molecule:luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus 98 d3d1ka1 not modelled 7.2 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 99 c3huiA_ not modelled 7.1 26 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin2 in the class i cyp199a2 system from rhodopseudomonas3 palustris

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0