Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	F	F	Y	I	H	P	D	N	P	Q	Q	R	L	I	N	Q	A	V	E	I	V	R	K	G	G	V	I	V	Y	P	T	D	S	G	Y	A	L	G	C	K	I	E	D	K	N	A	M	E	R	I	C	R	I	R	Q	L	P
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	G	H	N	F	T	L	M	C	R	D	L	S	E	L	S	T	Y	S	F	V	D	N	V	A	F	R	L	M	K	N	N	T	P	G	N	Y	T	F	I	L	K	G	T	K	E	V	P	R	R	L	L	Q	E	K	R	K	T	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	R	V	P	S	N	P	I	A	Q	A	L	L	E	A	L	G	E	P	M	L	S	T	S	L	M	L	P	G	S	E	F	T	E	S	D	P	E	E	I	K	D	R	L	E	K	Q	V	D	L	I	I	H	G	G	Y	L	G	Q	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence		P	T	T	V	I	D	L	T	D	D	T	P	V	V	V	R	E	G	V	G	D	V	K	P	F	L
Secondary structure
SS confidence
Disorder																										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k7j chain A Region: 1 - 206 Aligned: 206 Modelled: 205 Confidence: 100.0% Identity: 97% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 2eqa chain A Region: 2 - 205 Aligned: 201 Modelled: 204 Confidence: 100.0% Identity: 28% PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii Phyre2 PDB 1jcu chain A Region: 4 - 206 Aligned: 198 Modelled: 203 Confidence: 100.0% Identity: 30% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 1hru chain A Region: 10 - 196 Aligned: 183 Modelled: 187 Confidence: 100.0% Identity: 23% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: YrdC-like Phyre2 PDB 3l7v chain A Region: 1 - 175 Aligned: 162 Modelled: 169 Confidence: 100.0% Identity: 23% PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1377c; PDBTitle: crystal structure of a hypothetical protein smu.1377c from2 streptococcus mutans ua159 Phyre2 PDB 3tsu chain A Region: 14 - 206 Aligned: 181 Modelled: 193 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate Phyre2 PDB 1t5l chain A domain 1 Region: 9 - 153 Aligned: 126 Modelled: 143 Confidence: 81.0% Identity: 13% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 2frx chain D Region: 13 - 55 Aligned: 39 Modelled: 43 Confidence: 52.7% Identity: 28% PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli Phyre2 PDB 1d4o chain A Region: 17 - 67 Aligned: 47 Modelled: 51 Confidence: 48.9% Identity: 17% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Transhydrogenase domain III (dIII) Phyre2 PDB 1pt9 chain B Region: 17 - 67 Aligned: 47 Modelled: 51 Confidence: 48.5% Identity: 17% PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue Phyre2 PDB 3m4x chain A Region: 13 - 55 Aligned: 39 Modelled: 43 Confidence: 48.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase Phyre2 PDB 3m6w chain A Region: 13 - 55 Aligned: 39 Modelled: 43 Confidence: 43.3% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine Phyre2 PDB 2bru chain C Region: 18 - 67 Aligned: 46 Modelled: 50 Confidence: 42.8% Identity: 20% PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase Phyre2 PDB 1pno chain A Region: 18 - 67 Aligned: 46 Modelled: 50 Confidence: 41.7% Identity: 17% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Transhydrogenase domain III (dIII) Phyre2 PDB 2oem chain A Region: 129 - 181 Aligned: 51 Modelled: 53 Confidence: 41.5% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate enolase; PDBTitle: crystal structure of a rubisco-like protein from geobacillus2 kaustophilus liganded with mg2+ and 2,3-diketohexane 1-phosphate Phyre2 PDB 1hq0 chain A Region: 113 - 149 Aligned: 31 Modelled: 37 Confidence: 40.9% Identity: 26% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: Type 1 cytotoxic necrotizing factor, catalytic domain Phyre2 PDB 1ixk chain A Region: 13 - 55 Aligned: 39 Modelled: 41 Confidence: 37.1% Identity: 28% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: NOL1/NOP2/sun Phyre2 PDB 3fk4 chain A Region: 129 - 181 Aligned: 52 Modelled: 53 Confidence: 36.3% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:rubisco-like protein; PDBTitle: crystal structure of rubisco-like protein from bacillus2 cereus atcc 14579 Phyre2 PDB 3p3d chain A Region: 19 - 53 Aligned: 31 Modelled: 35 Confidence: 35.2% Identity: 32% PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii Phyre2 PDB 3nwr chain A Region: 129 - 181 Aligned: 51 Modelled: 53 Confidence: 33.8% Identity: 22% PDB header:lyase Chain: A: PDB Molecule:a rubisco-like protein; PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum Phyre2 1 d1k7ja_ 2 c2eqaA_ 3 d1jcua_ 4 d1hrua_ 5 c3l7vA_ 6 c3tsuA_ 7 d1t5la1 8 c2frxD_ 9 d1d4oa_ 10 c1pt9B_ 11 c3m4xA_ 12 c3m6wA_ 13 c2bruC_ 14 d1pnoa_ 15 c2oemA_ 16 d1hq0a_ 17 d1ixka_ 18 c3fk4A_ 19 c3p3dA_ 20 c3nwrA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1k7ja_ 100.0 97 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 2 c2eqaA_ 100.0 28 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii 3 d1jcua_ 100.0 30 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 4 d1hrua_ 100.0 23 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 5 c3l7vA_ 100.0 23 PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1377c; PDBTitle: crystal structure of a hypothetical protein smu.1377c from2 streptococcus mutans ua159 6 c3tsuA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 7 d1t5la1 81.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 8 c2frxD_ 52.7 28 PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli 9 d1d4oa_ 48.9 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 10 c1pt9B_ 48.5 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 11 c3m4xA_ 48.0 21 PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase 12 c3m6wA_ 43.3 31 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 13 c2bruC_ 42.8 20 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 14 d1pnoa_ 41.7 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 15 c2oemA_ 41.5 18 PDB header:isomerase Chain: A: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate enolase; PDBTitle: crystal structure of a rubisco-like protein from geobacillus2 kaustophilus liganded with mg2+ and 2,3-diketohexane 1-phosphate 16 d1hq0a_ 40.9 26 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:Type 1 cytotoxic necrotizing factor, catalytic domain 17 d1ixka_ 37.1 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 18 c3fk4A_ 36.3 17 PDB header:isomerase Chain: A: PDB Molecule:rubisco-like protein; PDBTitle: crystal structure of rubisco-like protein from bacillus2 cereus atcc 14579 19 c3p3dA_ 35.2 32 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii 20 c3nwrA_ 33.8 22 PDB header:lyase Chain: A: PDB Molecule:a rubisco-like protein; PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum 21 d1ykwa1 not modelled 32.9 15 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 22 d2d69a1 not modelled 32.6 15 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 23 c2zviB_ not modelled 32.3 19 PDB header:isomerase Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis 24 d1sqga2 not modelled 32.0 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 25 d1rbla1 not modelled 31.3 19 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 26 d1bxna1 not modelled 30.5 15 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 27 d1ej7l1 not modelled 29.6 15 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 28 c2qj8B_ not modelled 29.1 22 PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution 29 c2qs0A_ not modelled 27.5 9 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 30 c3qfwB_ not modelled 27.1 17 PDB header:lyase Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase large PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris 31 c3mioA_ not modelled 27.0 10 PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 32 d1gk8a1 not modelled 26.9 14 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 33 c2yxlA_ not modelled 25.5 28 PDB header:transferase Chain: A: PDB Molecule:450aa long hypothetical fmu protein; PDBTitle: crystal structure of ph0851 34 c1sqgA_ not modelled 25.5 23 PDB header:transferase Chain: A: PDB Molecule:sun protein; PDBTitle: the crystal structure of the e. coli fmu apoenzyme at 1.652 a resolution 35 d1svda1 not modelled 25.4 13 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 36 c3hjhA_ not modelled 25.3 11 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor 37 c3a4tA_ not modelled 23.7 28 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase mj0026; PDBTitle: crystal structure of atrm4 from m.jannaschii with sinefungin 38 c3axtA_ not modelled 23.0 13 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 39 c1solA_ not modelled 22.9 7 PDB header:actin-binding protein Chain: A: PDB Molecule:gelsolin (150-169); PDBTitle: a pip2 and f-actin-binding site of gelsolin, residue 150-2 169 (nmr, averaged structure) 40 d1c4oa1 not modelled 22.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 41 d1geha1 not modelled 22.4 17 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 42 c1rldB_ not modelled 21.2 15 PDB header:lyase(carbon-carbon) Chain: B: PDB Molecule:ribulose 1,5 bisphosphate carboxylase/oxygenase (large PDBTitle: solid-state phase transition in the crystal structure of ribulose 1,5-2 biphosphate carboxylase(slash)oxygenase 43 d1snna_ not modelled 21.2 15 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 44 d2dula1 not modelled 21.0 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TRM1-like 45 c2d69B_ not modelled 20.5 15 PDB header:lyase Chain: B: PDB Molecule:ribulose bisphosphate carboxylase; PDBTitle: crystal structure of the complex of sulfate ion and octameric2 ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from3 pyrococcus horikoshii ot3 (form-2 crystal) 46 d1r0ua_ not modelled 20.1 20 Fold:Lipocalins Superfamily:Lipocalins Family:Hypothetical protein YwiB 47 c2qygC_ not modelled 18.7 13 PDB header:unknown function Chain: C: PDB Molecule:ribulose bisphosphate carboxylase-like protein 2; PDBTitle: crystal structure of a rubisco-like protein rlp2 from rhodopseudomonas2 palustris 48 c1rcxH_ not modelled 17.6 15 PDB header:lyase (carbon-carbon) Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase; PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate 49 c1telA_ not modelled 16.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ribulose bisphosphate carboxylase, large subunit; PDBTitle: crystal structure of a rubisco-like protein from chlorobium2 tepidum 50 d1bwva1 not modelled 16.9 16 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 51 c2gq1A_ not modelled 14.7 22 PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions 52 d8ruca1 not modelled 14.6 16 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 53 c1gehE_ not modelled 14.5 17 PDB header:lyase Chain: E: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase; PDBTitle: crystal structure of archaeal rubisco (ribulose 1,5-bisphosphate2 carboxylase/oxygenase) 54 c2fhyL_ not modelled 14.0 12 PDB header:hydrolase Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1; PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor 55 d2eyqa4 not modelled 14.0 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 56 c3n0vD_ not modelled 12.9 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 57 c3p04A_ not modelled 12.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 58 d1tksa_ not modelled 12.0 21 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 59 c3ckkA_ not modelled 11.6 25 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: crystal structure of human methyltransferase-like protein 1 60 d1nuwa_ not modelled 11.6 16 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 61 d1k4ia_ not modelled 11.6 15 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 62 c3louB_ not modelled 11.5 12 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 63 c1kevB_ not modelled 11.4 7 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: structure of nadp-dependent alcohol dehydrogenase 64 d1wdda1 not modelled 10.7 16 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 65 c2ekgB_ not modelled 10.6 10 PDB header:oxidoreductase Chain: B: PDB Molecule:proline dehydrogenase/delta-1-pyrroline-5-carboxylate PDBTitle: structure of thermus thermophilus proline dehydrogenase inactivated by2 n-propargylglycine 66 d1bhea_ not modelled 10.4 15 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 67 c2eyqA_ not modelled 9.9 12 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor 68 c2vduE_ not modelled 9.9 25 PDB header:transferase Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex 69 d1ftaa_ not modelled 9.8 12 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 70 c3crw1_ not modelled 9.3 29 PDB header:hydrolase Chain: 1: PDB Molecule:xpd/rad3 related dna helicase; PDBTitle: "xpd_apo" 71 c1bwvA_ not modelled 8.9 16 PDB header:lyase Chain: A: PDB Molecule:protein (ribulose bisphosphate carboxylase); PDBTitle: activated ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco)2 complexed with the reaction intermediate analogue 2-carboxyarabinitol3 1,5-bisphosphate 72 d1d9qa_ not modelled 8.6 22 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 73 d1duvg1 not modelled 8.3 17 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 74 d1h80a_ not modelled 8.2 18 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:iota-carrageenase 75 d1q32a2 not modelled 8.2 44 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 76 d2hi6a1 not modelled 8.1 15 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:AF0055-like 77 d1g57a_ not modelled 7.7 12 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 78 d2f06a1 not modelled 7.7 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 79 c3p04B_ not modelled 7.6 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 80 d1knza_ not modelled 7.5 17 Fold:NSP3 homodimer Superfamily:NSP3 homodimer Family:NSP3 homodimer 81 c2ouiB_ not modelled 7.2 8 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: d275p mutant of alcohol dehydrogenase from protozoa entamoeba2 histolytica 82 d1spia_ not modelled 7.2 24 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 83 d1bk4a_ not modelled 7.1 16 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 84 d1yksa2 not modelled 7.1 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 85 c2y75F_ not modelled 7.1 25 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 86 d1xcfa_ not modelled 7.0 11 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 87 c3d7aB_ not modelled 7.0 14 PDB header:unknown function Chain: B: PDB Molecule:upf0201 protein ph1010; PDBTitle: crystal structure of duf54 family protein ph1010 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 88 c1f8fA_ not modelled 7.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:benzyl alcohol dehydrogenase; PDBTitle: crystal structure of benzyl alcohol dehydrogenase from acinetobacter2 calcoaceticus 89 d1otha1 not modelled 6.9 16 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 90 d1tg7a3 not modelled 6.7 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Beta-galactosidase LacA, domains 4 and 5 91 d1jy1a2 not modelled 6.6 44 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 92 c1r37B_ not modelled 6.4 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent alcohol dehydrogenase; PDBTitle: alcohol dehydrogenase from sulfolobus solfataricus2 complexed with nad(h) and 2-ethoxyethanol 93 d1zq1a2 not modelled 6.3 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 94 d1yzha1 not modelled 6.2 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TrmB-like 95 d1mvfd_ not modelled 6.0 38 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 96 d2b2na1 not modelled 5.9 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 97 d1vlva1 not modelled 5.8 23 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 98 c2v34B_ not modelled 5.7 16 PDB header:transferase Chain: B: PDB Molecule:4-diphosphocytidyl-2c-methyl-d-erythritol kinase; PDBTitle: ispe in complex with cytidine and ligand 99 c3h1tA_ not modelled 5.7 44 PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0