Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Q	T	L	L	S	S	F	G	T	P	F	E	R	V	E	N	A	L	A	A	L	R	E	G	R	G	V	M	V	L	D	D	E	D	R	E	N	E	G	D	M	I	F	P	A	E	T	M	T	V	E	Q	M	A	L	T	I	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	G	S	G	I	V	C	L	C	I	T	E	D	R	R	K	Q	L	D	L	P	M	M	V	E	N	N	T	S	A	Y	G	T	G	F	T	V	T	I	E	A	A	E	G	V	T	T	G	V	S	A	A	D	R	I	T	T	V	R	A
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	I	A	D	G	A	K	P	S	D	L	N	R	P	G	H	V	F	P	L	R	A	Q	A	G	G	V	L	T	R	G	G	H	T	E	A	T	I	D	L	M	T	L	A	G	F	K	P	A	G	V	L	C	E	L	T	N	D	D	G
Secondary structure
SS confidence
Disorder							?	?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Sequence		T	M	A	R	A	P	E	C	I	E	F	A	N	K	H	N	M	A	L	V	T	I	E	D	L	V	A	Y	R	Q	A	H	E	R	K	A	S
Secondary structure
SS confidence
Disorder				?	?																												?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1g57 chain A Region: 5 - 213 Aligned: 205 Modelled: 209 Confidence: 100.0% Identity: 100% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 1k4i chain A Region: 13 - 216 Aligned: 204 Modelled: 204 Confidence: 100.0% Identity: 46% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 1snn chain A Region: 14 - 209 Aligned: 195 Modelled: 196 Confidence: 100.0% Identity: 31% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 1tks chain A Region: 11 - 211 Aligned: 195 Modelled: 201 Confidence: 100.0% Identity: 49% Fold: YrdC/RibB Superfamily: YrdC/RibB Family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB Phyre2 PDB 3mio chain A Region: 11 - 213 Aligned: 192 Modelled: 203 Confidence: 100.0% Identity: 48% PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 Phyre2 PDB 1lh0 chain A Region: 147 - 215 Aligned: 69 Modelled: 69 Confidence: 93.3% Identity: 22% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 3n2l chain A Region: 147 - 212 Aligned: 66 Modelled: 66 Confidence: 87.7% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 2.1 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase (pyre) from vibrio cholerae o1 biovar eltor3 str. n16961 Phyre2 PDB 1y0n chain A Region: 14 - 48 Aligned: 32 Modelled: 35 Confidence: 82.9% Identity: 34% Fold: YehU-like Superfamily: YehU-like Family: YehU-like Phyre2 PDB 3mjd chain A Region: 147 - 211 Aligned: 65 Modelled: 65 Confidence: 76.3% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis. Phyre2 PDB 1ohw chain A Region: 155 - 200 Aligned: 46 Modelled: 46 Confidence: 72.9% Identity: 20% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 1js3 chain A Region: 155 - 200 Aligned: 46 Modelled: 46 Confidence: 68.7% Identity: 15% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: Pyridoxal-dependent decarboxylase Phyre2 PDB 1ko7 chain A domain 1 Region: 130 - 201 Aligned: 67 Modelled: 72 Confidence: 59.8% Identity: 16% Fold: MurF and HprK N-domain-like Superfamily: HprK N-terminal domain-like Family: HPr kinase/phoshatase HprK N-terminal domain Phyre2 PDB 3p04 chain A Region: 11 - 31 Aligned: 21 Modelled: 21 Confidence: 49.2% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 Phyre2 PDB 2prz chain B Region: 147 - 212 Aligned: 66 Modelled: 66 Confidence: 48.4% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase 1; PDBTitle: s. cerevisiae orotate phosphoribosyltransferase complexed2 with omp Phyre2 PDB 3p04 chain B Region: 11 - 31 Aligned: 21 Modelled: 21 Confidence: 46.3% Identity: 29% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 Phyre2 PDB 2wns chain B Region: 147 - 215 Aligned: 62 Modelled: 69 Confidence: 41.6% Identity: 16% PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp) Phyre2 PDB 1tif chain A Region: 173 - 203 Aligned: 31 Modelled: 31 Confidence: 41.5% Identity: 26% Fold: beta-Grasp (ubiquitin-like) Superfamily: Translation initiation factor IF3, N-terminal domain Family: Translation initiation factor IF3, N-terminal domain Phyre2 PDB 2uvp chain B Region: 16 - 38 Aligned: 23 Modelled: 23 Confidence: 38.7% Identity: 17% PDB header:unknown function Chain: B: PDB Molecule:hoba; PDBTitle: crystal structure of hoba (hp1230)from helicobacter pylori Phyre2 PDB 1oey chain J Region: 37 - 65 Aligned: 26 Modelled: 29 Confidence: 38.6% Identity: 35% Fold: beta-Grasp (ubiquitin-like) Superfamily: CAD & PB1 domains Family: PB1 domain Phyre2 PDB 3bcx chain A Region: 166 - 201 Aligned: 36 Modelled: 36 Confidence: 37.3% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase Phyre2 1 d1g57a_ 2 d1k4ia_ 3 d1snna_ 4 d1tksa_ 5 c3mioA_ 6 d1lh0a_ 7 c3n2lA_ 8 d1y0na_ 9 c3mjdA_ 10 d1ohwa_ 11 d1js3a_ 12 d1ko7a1 13 c3p04A_ 14 c2przB_ 15 c3p04B_ 16 c2wnsB_ 17 d1tifa_ 18 c2uvpB_ 19 d1oeyj_ 20 c3bcxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1g57a_ 100.0 100 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 2 d1k4ia_ 100.0 46 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 3 d1snna_ 100.0 31 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 4 d1tksa_ 100.0 49 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 5 c3mioA_ 100.0 48 PDB header:lyase Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase; PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00 6 d1lh0a_ 93.3 22 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 7 c3n2lA_ 87.7 21 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 2.1 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase (pyre) from vibrio cholerae o1 biovar eltor3 str. n16961 8 d1y0na_ 82.9 34 Fold:YehU-like Superfamily:YehU-like Family:YehU-like 9 c3mjdA_ 76.3 17 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis. 10 d1ohwa_ 72.9 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 11 d1js3a_ 68.7 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase 12 d1ko7a1 59.8 16 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 13 c3p04A_ 49.2 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 14 c2przB_ 48.4 14 PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase 1; PDBTitle: s. cerevisiae orotate phosphoribosyltransferase complexed2 with omp 15 c3p04B_ 46.3 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 16 c2wnsB_ 41.6 16 PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp) 17 d1tifa_ 41.5 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Translation initiation factor IF3, N-terminal domain Family:Translation initiation factor IF3, N-terminal domain 18 c2uvpB_ 38.7 17 PDB header:unknown function Chain: B: PDB Molecule:hoba; PDBTitle: crystal structure of hoba (hp1230)from helicobacter pylori 19 d1oeyj_ 38.6 35 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 20 c3bcxA_ 37.3 17 PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase 21 c3qw4B_ not modelled 36.4 19 PDB header:transferase, lyase Chain: B: PDB Molecule:ump synthase; PDBTitle: structure of leishmania donovani ump synthase 22 c2p1zA_ not modelled 32.4 17 PDB header:transferase Chain: A: PDB Molecule:phosphoribosyltransferase; PDBTitle: crystal structure of phosphoribosyltransferase from corynebacterium2 diphtheriae 23 c3nuiA_ not modelled 31.1 15 PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 24 c3jszA_ not modelled 30.7 16 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: legionella pneumophila glucosyltransferase lgt1 n293a with udp-glc 25 c3hmuA_ not modelled 30.5 20 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi 26 c3k40B_ not modelled 30.4 24 PDB header:lyase Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase; PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase 27 c2okkA_ not modelled 30.0 17 PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) 28 c2ordA_ not modelled 29.8 19 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution 29 c2eo5A_ not modelled 29.0 24 PDB header:transferase Chain: A: PDB Molecule:419aa long hypothetical aminotransferase; PDBTitle: crystal structure of 4-aminobutyrate aminotransferase from sulfolobus2 tokodaii strain7 30 c2l09A_ not modelled 28.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 31 c3oksB_ not modelled 28.7 19 PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis 32 d1hrua_ not modelled 28.0 12 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 33 c2cjdA_ not modelled 27.6 13 PDB header:transferase Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase; PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form 34 c3dezA_ not modelled 26.4 18 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans 35 c3l44A_ not modelled 26.1 12 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1; PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase 36 d1h8ba_ not modelled 25.2 16 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 37 d1yqea1 not modelled 24.8 15 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 38 c3m3hA_ not modelled 24.4 16 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.75 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase from bacillus anthracis str. 'ames3 ancestor' 39 c2jisA_ not modelled 24.1 17 PDB header:lyase Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase; PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp. 40 c3fcrA_ not modelled 23.9 20 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution 41 d1sffa_ not modelled 23.2 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 42 d1fc4a_ not modelled 23.0 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 43 c2gfqC_ not modelled 22.4 14 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 44 c1t3mA_ not modelled 22.2 17 PDB header:hydrolase Chain: A: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 45 d1j20a1 not modelled 22.0 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 46 d1fvpa_ not modelled 21.9 26 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 47 c3bs8A_ not modelled 21.1 14 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis 48 c2w8wA_ not modelled 20.8 24 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser 49 d2aeea1 not modelled 20.8 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 50 c3ndnC_ not modelled 20.7 14 PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate 51 c3nx3A_ not modelled 20.6 12 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni 52 d1vbga2 not modelled 19.6 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 53 c2pb2B_ not modelled 19.5 17 PDB header:transferase Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase; PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding 54 d1vkma_ not modelled 19.3 20 Fold:Indigoidine synthase A-like Superfamily:Indigoidine synthase A-like Family:Indigoidine synthase A-like 55 c3n5mD_ not modelled 18.8 17 PDB header:transferase Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystals structure of a bacillus anthracis aminotransferase 56 c3iuuA_ not modelled 18.7 23 PDB header:hydrolase Chain: A: PDB Molecule:putative metallopeptidase; PDBTitle: crystal structure of putative metallopeptidase (yp_676511.1) from2 mesorhizobium sp. bnc1 at 2.13 a resolution 57 c2gezE_ not modelled 18.5 11 PDB header:hydrolase Chain: E: PDB Molecule:l-asparaginase alpha subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 58 c1apyA_ not modelled 18.5 11 PDB header:hydrolase Chain: A: PDB Molecule:aspartylglucosaminidase; PDBTitle: human aspartylglucosaminidase 59 c2yzkC_ not modelled 18.2 24 PDB header:transferase Chain: C: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 aeropyrum pernix 60 c2k89A_ not modelled 18.0 8 PDB header:protein binding Chain: A: PDB Molecule:phospholipase a-2-activating protein; PDBTitle: solution structure of a novel ubiquitin-binding domain from2 human plaa (pfuc, gly76-pro77 cis isomer) 61 c2jyaA_ not modelled 17.8 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 62 c2kg4A_ not modelled 17.4 15 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 63 c2iz6A_ not modelled 17.2 15 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 64 c3i5tB_ not modelled 16.8 17 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 65 c2cb1A_ not modelled 16.5 19 PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2. 66 c3dxvA_ not modelled 16.1 14 PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae 67 d1y0ba1 not modelled 15.8 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 68 d2ctza1 not modelled 15.7 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 69 c2kruA_ not modelled 15.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) 70 c3c19A_ not modelled 15.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mk0293; PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19 71 c2qmaB_ not modelled 15.3 18 PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus 72 d1k7ja_ not modelled 15.1 10 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 73 c3a8uX_ not modelled 15.1 27 PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase 74 c1s97D_ not modelled 15.1 21 PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch 75 d2bwna1 not modelled 15.1 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 76 d1ru4a_ not modelled 14.9 21 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate transeliminase 77 c1ko7B_ not modelled 14.8 15 PDB header:transferase,hydrolase Chain: B: PDB Molecule:hpr kinase/phosphatase; PDBTitle: x-ray structure of the hpr kinase/phosphatase from2 staphylococcus xylosus at 1.95 a resolution 78 d1zoda1 not modelled 14.0 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 79 c1zczA_ not modelled 13.9 22 PDB header:transferase/hydrolase Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh; PDBTitle: crystal structure of phosphoribosylaminoimidazolecarboxamide2 formyltransferase / imp cyclohydrolase (tm1249) from thermotoga3 maritima at 1.88 a resolution 80 d2byla1 not modelled 13.8 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 81 d1kl1a_ not modelled 13.6 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 82 d1zcza2 not modelled 13.6 22 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 83 d1vl2a1 not modelled 13.4 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 84 c3hs2H_ not modelled 13.1 19 PDB header:antitoxin Chain: H: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group 85 c1kblA_ not modelled 13.0 15 PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: pyruvate phosphate dikinase 86 d1pkxa2 not modelled 12.7 19 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 87 c2zakB_ not modelled 12.7 17 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase precursor; PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation 88 d1knxa1 not modelled 12.6 15 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 89 d1jx4a2 not modelled 12.6 23 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 90 c2vyoA_ not modelled 12.5 4 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 91 c1k97A_ not modelled 12.4 19 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 92 d2gz1a2 not modelled 12.2 17 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 93 c1w17A_ not modelled 11.8 15 PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. 94 d1h6za2 not modelled 11.7 16 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 95 c3tqxA_ not modelled 11.7 20 PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii 96 c1pixB_ not modelled 11.6 24 PDB header:lyase Chain: B: PDB Molecule:glutaconyl-coa decarboxylase a subunit; PDBTitle: crystal structure of the carboxyltransferase subunit of the2 bacterial ion pump glutaconyl-coenzyme a decarboxylase 97 d1l1qa_ not modelled 11.3 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 98 c3ervA_ not modelled 11.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative c39-like peptidase; PDBTitle: crystal structure of an putative c39-like peptidase from2 bacillus anthracis 99 d1g8ma2 not modelled 11.0 22 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0