Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	S	L	Q	A	L	F	G	G	T	F	D	P	V	H	Y	G	H	L	K	P	V	E	T	L	A	N	L	I	G	L	T	R	V	T	I	I	P	N	N	V	P	P	H	R	P	Q	P	E	A	N	S	V	Q	R	K	H	M	L
Secondary structure
SS confidence
Disorder		?	?	?																																											?	?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	L	A	I	A	D	K	P	L	F	T	L	D	E	R	E	L	K	R	N	A	P	S	Y	T	A	Q	T	L	K	E	W	R	Q	E	Q	G	P	D	V	P	L	A	F	I	I	G	Q	D	S	L	L	T	F	P	T	W	Y	E	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	T	I	L	D	N	A	H	L	I	V	C	R	R	P	G	Y	P	L	E	M	A	Q	P	Q	Y	Q	Q	W	L	E	D	H	L	T	H	N	P	E	D	L	H	L	Q	P	A	G	K	I	Y	L	A	E	T	P	W	F	N	I	S
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Sequence		A	T	I	I	R	E	R	L	Q	N	G	E	S	C	E	D	L	L	P	E	P	V	L	T	Y	I	N	Q	Q	G	L	Y	R
Secondary structure
SS confidence
Disorder														?	?		?													?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k4m chain A Region: 1 - 213 Aligned: 213 Modelled: 213 Confidence: 100.0% Identity: 100% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 1yun chain B Region: 3 - 213 Aligned: 209 Modelled: 211 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: B: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from pseudomonas aeruginosa Phyre2 PDB 1kam chain A Region: 2 - 213 Aligned: 179 Modelled: 188 Confidence: 100.0% Identity: 40% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 1nuu chain A Region: 3 - 213 Aligned: 199 Modelled: 199 Confidence: 100.0% Identity: 25% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 1kr2 chain A Region: 2 - 213 Aligned: 199 Modelled: 200 Confidence: 100.0% Identity: 24% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 3e27 chain B Region: 1 - 213 Aligned: 187 Modelled: 189 Confidence: 100.0% Identity: 39% PDB header:transferase Chain: B: PDB Molecule:nicotinate (nicotinamide) nucleotide PDBTitle: nicotinic acid mononucleotide (namn) adenylyltransferase2 from bacillus anthracis: product complex Phyre2 PDB 2h29 chain A Region: 1 - 213 Aligned: 187 Modelled: 189 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from staphylococcus aureus: product3 bound form 1 Phyre2 PDB 3f3m chain A Region: 1 - 213 Aligned: 155 Modelled: 179 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: six crystal structures of two phosphopantetheine2 adenylyltransferases reveal an alternative ligand binding3 mode and an associated structural change Phyre2 PDB 1tfu chain A Region: 1 - 209 Aligned: 155 Modelled: 165 Confidence: 100.0% Identity: 19% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 3nd5 chain D Region: 1 - 208 Aligned: 151 Modelled: 162 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase (ppat)2 from enterococcus faecalis Phyre2 PDB 3ikz chain A Region: 1 - 209 Aligned: 153 Modelled: 166 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei Phyre2 PDB 1od6 chain A Region: 1 - 213 Aligned: 155 Modelled: 175 Confidence: 100.0% Identity: 22% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 1o6b chain A Region: 3 - 209 Aligned: 156 Modelled: 166 Confidence: 100.0% Identity: 21% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 1vlh chain A Region: 4 - 208 Aligned: 154 Modelled: 171 Confidence: 100.0% Identity: 19% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 1qjc chain A Region: 4 - 209 Aligned: 155 Modelled: 172 Confidence: 100.0% Identity: 21% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 3h05 chain A Region: 1 - 208 Aligned: 155 Modelled: 167 Confidence: 100.0% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vpa0413; PDBTitle: the crystal structure of a putative nicotinate-nucleotide2 adenylyltransferase from vibrio parahaemolyticus Phyre2 PDB 1f9a chain A Region: 1 - 212 Aligned: 157 Modelled: 163 Confidence: 100.0% Identity: 22% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 3nv7 chain A Region: 4 - 208 Aligned: 154 Modelled: 171 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of h.pylori phosphopantetheine adenylyltransferase2 mutant i4v/n76y Phyre2 PDB 1ej2 chain A Region: 1 - 213 Aligned: 161 Modelled: 165 Confidence: 100.0% Identity: 20% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 2qjo chain B Region: 2 - 210 Aligned: 161 Modelled: 163 Confidence: 100.0% Identity: 20% PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. Phyre2 1 d1k4ma_ 2 c1yunB_ 3 d1kama_ 4 d1nuua_ 5 d1kr2a_ 6 c3e27B_ 7 c2h29A_ 8 c3f3mA_ 9 d1tfua_ 10 c3nd5D_ 11 c3ikzA_ 12 d1od6a_ 13 d1o6ba_ 14 d1vlha_ 15 d1qjca_ 16 c3h05A_ 17 d1f9aa_ 18 c3nv7A_ 19 d1ej2a_ 20 c2qjoB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1k4ma_ 100.0 100 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 2 c1yunB_ 100.0 37 PDB header:transferase Chain: B: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from pseudomonas aeruginosa 3 d1kama_ 100.0 40 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 4 d1nuua_ 100.0 25 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 5 d1kr2a_ 100.0 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 6 c3e27B_ 100.0 39 PDB header:transferase Chain: B: PDB Molecule:nicotinate (nicotinamide) nucleotide PDBTitle: nicotinic acid mononucleotide (namn) adenylyltransferase2 from bacillus anthracis: product complex 7 c2h29A_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from staphylococcus aureus: product3 bound form 1 8 c3f3mA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: six crystal structures of two phosphopantetheine2 adenylyltransferases reveal an alternative ligand binding3 mode and an associated structural change 9 d1tfua_ 100.0 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 10 c3nd5D_ 100.0 28 PDB header:transferase Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase (ppat)2 from enterococcus faecalis 11 c3ikzA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei 12 d1od6a_ 100.0 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 13 d1o6ba_ 100.0 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 14 d1vlha_ 100.0 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 15 d1qjca_ 100.0 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 16 c3h05A_ 100.0 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vpa0413; PDBTitle: the crystal structure of a putative nicotinate-nucleotide2 adenylyltransferase from vibrio parahaemolyticus 17 d1f9aa_ 100.0 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 18 c3nv7A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: crystal structure of h.pylori phosphopantetheine adenylyltransferase2 mutant i4v/n76y 19 d1ej2a_ 100.0 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 20 c2qjoB_ 100.0 20 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 21 d1lw7a1 not modelled 99.8 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 22 c2r5wA_ not modelled 99.8 17 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 23 c1lw7A_ not modelled 99.8 18 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae 24 c3gmiA_ not modelled 99.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0348 protein mj0951; PDBTitle: crystal structure of a protein of unknown function from2 methanocaldococcus jannaschii 25 d1mrza2 not modelled 99.7 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 26 d1coza_ not modelled 99.7 26 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Cytidylyltransferase 27 c2b7lD_ not modelled 99.7 23 PDB header:transferase Chain: D: PDB Molecule:glycerol-3-phosphate cytidylyltransferase; PDBTitle: crystal structure of ctp:glycerol-3-phosphate2 cytidylyltransferase from staphylococcus aureus 28 c3glvB_ not modelled 99.2 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:lipopolysaccharide core biosynthesis protein; PDBTitle: crystal structure of the lipopolysaccharide core biosynthesis protein2 from thermoplasma volcanium gss1 29 c3do8B_ not modelled 99.1 19 PDB header:transferase Chain: B: PDB Molecule:phosphopantetheine adenylyltransferase; PDBTitle: the crystal structure of the protein with unknown function2 from archaeoglobus fulgidus 30 c3elbA_ not modelled 99.0 20 PDB header:transferase Chain: A: PDB Molecule:ethanolamine-phosphate cytidylyltransferase; PDBTitle: human ctp: phosphoethanolamine cytidylyltransferase in complex with2 cmp 31 c3op1A_ not modelled 99.0 19 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 32 c2x0kB_ not modelled 99.0 22 PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes 33 c1t6zB_ not modelled 99.0 19 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 34 c3hl4B_ not modelled 98.9 16 PDB header:transferase Chain: B: PDB Molecule:choline-phosphate cytidylyltransferase a; PDBTitle: crystal structure of a mammalian ctp:phosphocholine2 cytidylyltransferase with cdp-choline 35 d1jhda2 not modelled 98.8 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 36 d1x6va2 not modelled 98.6 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 37 c1jhdA_ not modelled 98.6 14 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of bacterial atp sulfurylase from the2 riftia pachyptila symbiont 38 c1g8gB_ not modelled 98.5 20 PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: atp sulfurylase from s. cerevisiae: the binary product complex with2 aps 39 c2qjfB_ not modelled 98.5 15 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'- PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1 40 d1g8fa2 not modelled 98.5 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 41 c1xnjB_ not modelled 98.5 13 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1 42 c1r6xA_ not modelled 98.5 20 PDB header:transferase Chain: A: PDB Molecule:atp:sulfate adenylyltransferase; PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate 43 c3cr8C_ not modelled 98.4 13 PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans 44 c1m8pB_ not modelled 98.4 17 PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state 45 d1v47a2 not modelled 98.3 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 46 d1m8pa2 not modelled 98.3 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 47 c2gksB_ not modelled 97.9 14 PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile 48 c1v47B_ not modelled 97.6 12 PDB header:transferase Chain: B: PDB Molecule:atp sulfurylase; PDBTitle: crystal structure of atp sulfurylase from thermus2 thermophillus hb8 in complex with aps 49 c3guzB_ not modelled 96.3 21 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's 50 c3ag5A_ not modelled 90.2 16 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantothenate synthetase from staphylococcus2 aureus 51 c3innB_ not modelled 89.9 21 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine-ligase in complex2 with atp at low occupancy at 2.1 a resolution 52 d1ihoa_ not modelled 89.6 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 53 c3uk2B_ not modelled 89.3 14 PDB header:ligase Chain: B: PDB Molecule:pantothenate synthetase; PDBTitle: the structure of pantothenate synthetase from burkholderia2 thailandensis 54 c3n8hA_ not modelled 89.2 17 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine ligase from francisella2 tularensis 55 c2ejcA_ not modelled 88.6 24 PDB header:ligase Chain: A: PDB Molecule:pantoate--beta-alanine ligase; PDBTitle: crystal structure of pantoate--beta-alanine ligase (panc)2 from thermotoga maritima 56 d1v8fa_ not modelled 88.5 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 57 d2a84a1 not modelled 84.2 28 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 58 c3mxtA_ not modelled 77.3 16 PDB header:ligase Chain: A: PDB Molecule:pantothenate synthetase; PDBTitle: crystal structure of pantoate-beta-alanine ligase from campylobacter2 jejuni 59 c3dzcA_ not modelled 72.8 12 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 60 c3focB_ not modelled 66.7 17 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia 61 c2dlnA_ not modelled 53.7 14 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 62 c3c8zB_ not modelled 50.5 21 PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: the 1.6 a crystal structure of mshc: the rate limiting2 enzyme in the mycothiol biosynthetic pathway 63 c1zuwA_ not modelled 44.5 7 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu 64 c2q4dB_ not modelled 36.9 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 65 c3s81A_ not modelled 35.7 40 PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium 66 d2d5ba2 not modelled 35.5 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 67 c2el7A_ not modelled 34.7 8 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from thermus2 thermophilus 68 c3sp1B_ not modelled 33.9 11 PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi 69 d1ydha_ not modelled 33.0 11 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 70 d1f74a_ not modelled 29.5 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 71 d1jfla1 not modelled 28.0 44 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 72 c2dx7B_ not modelled 26.2 44 PDB header:isomerase Chain: B: PDB Molecule:aspartate racemase; PDBTitle: crystal structure of pyrococcus horikoshii ot3 aspartate racemase2 complex with citric acid 73 d1iowa1 not modelled 25.3 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 74 c2q4oA_ not modelled 24.7 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210 75 d2q4oa1 not modelled 24.7 10 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 76 d1rqga2 not modelled 24.6 29 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 77 c3hv0A_ not modelled 23.2 14 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum 78 d1iq0a2 not modelled 21.1 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 79 c2zskA_ not modelled 20.5 22 PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 80 c1woyA_ not modelled 20.3 14 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of methionyl trna synthetase y225f mutant2 from thermus thermophilus 81 d1n3la_ not modelled 20.2 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 82 c1znyA_ not modelled 19.8 18 PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of mycobacterium tuberculosis guanylate kinase in2 complex with gdp 83 c2ct8A_ not modelled 19.3 16 PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue 84 c1u0bB_ not modelled 18.4 21 PDB header:ligase/rna Chain: B: PDB Molecule:cysteinyl trna; PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys 85 d1q0qa2 not modelled 18.2 40 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 86 c2k4nA_ not modelled 18.1 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein pf0246; PDBTitle: nmr structure of protein pf0246 from pyrococcus furiosus:2 target pfr75 from the northeast structural genomics3 consortium 87 c2qx7A_ not modelled 17.8 64 PDB header:plant protein Chain: A: PDB Molecule:eugenol synthase 1; PDBTitle: structure of eugenol synthase from ocimum basilicum 88 c3jxeB_ not modelled 17.4 17 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp 89 d1hx6a2 not modelled 17.1 56 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Coat protein p3 90 d1v31a_ not modelled 17.1 13 Fold:SWIB/MDM2 domain Superfamily:SWIB/MDM2 domain Family:SWIB/MDM2 domain 91 d1jila_ not modelled 16.8 27 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 92 c2gzmB_ not modelled 15.8 12 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis 93 d1v32a_ not modelled 15.3 19 Fold:SWIB/MDM2 domain Superfamily:SWIB/MDM2 domain Family:SWIB/MDM2 domain 94 d1uhra_ not modelled 14.8 13 Fold:SWIB/MDM2 domain Superfamily:SWIB/MDM2 domain Family:SWIB/MDM2 domain 95 c3akcA_ not modelled 14.5 18 PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8 96 c3dhnA_ not modelled 14.3 30 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 97 c2ts1A_ not modelled 14.1 22 PDB header:ligase (synthetase) Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms2 resolution. interaction of the enzyme with the tyrosyl adenylate3 intermediate 98 d2ts1a_ not modelled 14.1 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 99 c3tqoA_ not modelled 13.1 17 PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0