Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	R	K	Y	N	K	S	L	G	W	L	S	L	F	A	G	T	V	L	L	S	G	C	N	S	A	L	L	D	P	K	G	Q	I	G	L	E	Q	R	S	L	I	L	T	A	F	G	L	M	L	I	V	V	I	P	A	I	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?																						?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	A	V	G	F	A	W	K	Y	R	A	S	N	K	D	A	K	Y	S	P	N	W	S	H	S	N	K	V	E	A	V	V	W	T	V	P	I	L	I	I	I	F	L	A	V	L	T	W	K	T	T	H	A	L	E	P	S	K	P	L
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?	?																																				?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	H	D	E	K	P	I	T	I	E	V	V	S	M	D	W	K	W	F	F	I	Y	P	E	Q	G	I	A	T	V	N	E	I	A	F	P	A	N	T	P	V	Y	F	K	V	T	S	N	S	V	M	N	S	F	F	I	P	R	L	G
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	Q	I	Y	A	M	A	G	M	Q	T	R	L	H	L	I	A	N	E	P	G	T	Y	D	G	I	S	A	S	Y	S	G	P	G	F	S	G	M	K	F	K	A	I	A	T	P	D	R	A	A	F	D	Q	W	V	A	K	A	K	Q
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	P	N	T	M	S	D	M	A	A	F	E	K	L	A	A	P	S	E	Y	N	Q	V	E	Y	F	S	N	V	K	P	D	L	F	A	D	V	I	N	K	F	M	A	H	G	K	S	M	D	M	T	Q	P	E	G	E	H	S	A	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?									?	?		?	?	?	?	?	?	?																					?		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Sequence		E	G	M	E	G	M	D	M	S	H	A	E	S	A	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fft chain G Region: 27 - 283 Aligned: 257 Modelled: 257 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli Phyre2 PDB 1ar1 chain B Region: 26 - 244 Aligned: 212 Modelled: 219 Confidence: 100.0% Identity: 20% PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment Phyre2 PDB 1m57 chain H Region: 26 - 245 Aligned: 212 Modelled: 220 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) Phyre2 PDB 1qle chain B Region: 22 - 244 Aligned: 216 Modelled: 223 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment Phyre2 PDB 1v55 chain B Region: 28 - 238 Aligned: 198 Modelled: 204 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state Phyre2 PDB 1fft chain B domain 1 Region: 118 - 283 Aligned: 166 Modelled: 166 Confidence: 100.0% Identity: 100% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 1cyx chain A Region: 125 - 282 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 96% PDB header:electron transport Chain: A: PDB Molecule:cyoa; PDBTitle: quinol oxidase (periplasmic fragment of subunit ii with2 engineered cu-a binding site)(cyoa) Phyre2 PDB 1cyx chain A Region: 125 - 282 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 96% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 3ehb chain B domain 1 Region: 123 - 244 Aligned: 121 Modelled: 122 Confidence: 100.0% Identity: 24% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 1v54 chain B domain 1 Region: 123 - 238 Aligned: 115 Modelled: 116 Confidence: 100.0% Identity: 23% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 3dtu chain B domain 1 Region: 123 - 237 Aligned: 114 Modelled: 115 Confidence: 100.0% Identity: 27% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 1xme chain B Region: 77 - 226 Aligned: 140 Modelled: 150 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus Phyre2 PDB 2cua chain B Region: 123 - 226 Aligned: 94 Modelled: 104 Confidence: 100.0% Identity: 22% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 2cua chain A Region: 124 - 226 Aligned: 93 Modelled: 103 Confidence: 99.9% Identity: 23% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 1fft chain B domain 2 Region: 27 - 117 Aligned: 91 Modelled: 91 Confidence: 99.9% Identity: 100% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 1fwx chain A domain 1 Region: 123 - 228 Aligned: 95 Modelled: 106 Confidence: 99.8% Identity: 14% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Nitrosocyanin Phyre2 PDB 1qni chain A domain 1 Region: 113 - 227 Aligned: 104 Modelled: 115 Confidence: 99.7% Identity: 14% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Nitrosocyanin Phyre2 PDB 3dtu chain B domain 2 Region: 28 - 116 Aligned: 87 Modelled: 89 Confidence: 99.6% Identity: 13% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 1iby chain A Region: 125 - 226 Aligned: 96 Modelled: 102 Confidence: 99.6% Identity: 14% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Nitrosocyanin Phyre2 PDB 3ehb chain B domain 2 Region: 22 - 118 Aligned: 95 Modelled: 97 Confidence: 99.6% Identity: 13% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 1 c1fftG_ 2 c1ar1B_ 3 c1m57H_ 4 c1qleB_ 5 c1v55B_ 6 d1fftb1 7 c1cyxA_ 8 d1cyxa_ 9 d3ehbb1 10 d1v54b1 11 d3dtub1 12 c1xmeB_ 13 d2cuab_ 14 d2cuaa_ 15 d1fftb2 16 d1fwxa1 17 d1qnia1 18 d3dtub2 19 d1ibya_ 20 d3ehbb2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1fftG_ 100.0 100 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 2 c1ar1B_ 100.0 20 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 3 c1m57H_ 100.0 21 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 4 c1qleB_ 100.0 19 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 5 c1v55B_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 6 d1fftb1 100.0 100 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 7 c1cyxA_ 100.0 96 PDB header:electron transport Chain: A: PDB Molecule:cyoa; PDBTitle: quinol oxidase (periplasmic fragment of subunit ii with2 engineered cu-a binding site)(cyoa) 8 d1cyxa_ 100.0 96 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 9 d3ehbb1 100.0 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 10 d1v54b1 100.0 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 11 d3dtub1 100.0 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 12 c1xmeB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus 13 d2cuab_ 100.0 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 14 d2cuaa_ 99.9 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 15 d1fftb2 99.9 100 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 16 d1fwxa1 99.8 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 17 d1qnia1 99.7 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 18 d3dtub2 99.6 13 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 19 d1ibya_ 99.6 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 20 d3ehbb2 99.6 13 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 21 c3mk7F_ not modelled 99.6 7 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 22 d1v54b2 not modelled 99.1 12 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 23 c2iwkB_ not modelled 99.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: inhibitor-bound form of nitrous oxide reductase from2 achromobacter cycloclastes at 1.7 angstrom resolution 24 c3sbrF_ not modelled 99.0 12 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 25 c1qniE_ not modelled 99.0 13 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 26 c1fwxB_ not modelled 98.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 27 d1paza_ not modelled 97.5 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 28 d1qhqa_ not modelled 97.4 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 29 c2aanA_ not modelled 97.2 21 PDB header:electron transport Chain: A: PDB Molecule:auracyanin a; PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus 30 d1bxua_ not modelled 97.1 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 31 d1bqka_ not modelled 97.0 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 32 d2ov0a1 not modelled 96.8 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 33 d1cuoa_ not modelled 96.8 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 34 d2ccwa1 not modelled 96.8 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 35 d1joia_ not modelled 96.6 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 36 d1cc3a_ not modelled 96.6 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 37 d1pmya_ not modelled 96.6 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 38 d1rkra_ not modelled 96.6 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 39 c2h47C_ not modelled 96.5 14 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 40 d1jzga_ not modelled 96.5 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 41 d1nwpa_ not modelled 96.5 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 42 d1iuza_ not modelled 96.5 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 43 d1azca_ not modelled 96.5 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 44 d1adwa_ not modelled 96.3 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 45 c3ef4A_ not modelled 96.2 20 PDB header:electron transport Chain: A: PDB Molecule:blue copper protein; PDBTitle: crystal structure of native pseudoazurin from2 hyphomicrobium denitrificans 46 c3c75B_ not modelled 96.1 22 PDB header:oxidoreductase Chain: B: PDB Molecule:amicyanin; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 47 d1id2a_ not modelled 96.1 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 48 d2plta_ not modelled 96.1 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 49 d7pcya_ not modelled 96.1 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 50 d1ag6a_ not modelled 95.8 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 51 d1plaa_ not modelled 95.8 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 52 d1plca_ not modelled 95.8 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 53 d1pcsa_ not modelled 95.8 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 54 d9pcya_ not modelled 95.7 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 55 d1kdja_ not modelled 95.7 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 56 d1bypa_ not modelled 95.6 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 57 d2cj3a1 not modelled 94.7 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 58 d2jxma1 not modelled 94.6 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 59 d1mzya2 not modelled 93.7 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 60 d1sddb2 not modelled 93.6 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 61 d1e30a_ not modelled 93.1 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 62 d1kbva2 not modelled 92.6 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 63 d1kcwa2 not modelled 92.4 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 64 d2j5wa5 not modelled 92.0 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 65 c1kbwA_ not modelled 91.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:major outer membrane protein pan 1; PDBTitle: crystal structure of the soluble domain of ania from2 neisseria gonorrhoeae 66 d1snra2 not modelled 91.8 8 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 67 d2q5ba1 not modelled 90.8 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 68 c1aq8B_ not modelled 90.4 10 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrite reductase; PDBTitle: structure of alcaligenes faecalis nitrite reductase reduced2 with ascorbate 69 c3oa8B_ not modelled 90.0 9 PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax 70 c3gdcC_ not modelled 89.4 18 PDB header:oxidoreductase Chain: C: PDB Molecule:multicopper oxidase; PDBTitle: crystal structure of multicopper oxidase 71 d2bw4a2 not modelled 89.0 8 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 72 c2dv6F_ not modelled 88.9 15 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrite reductase; PDBTitle: crystal structure of nitrite reductase from hyphomicrobium2 denitrificans 73 d1snra1 not modelled 88.5 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 74 c1kcwA_ not modelled 88.4 9 PDB header:oxidoreductase Chain: A: PDB Molecule:ceruloplasmin; PDBTitle: x-ray crystal structure of human ceruloplasmin at 3.0 angstroms 75 d1aoza3 not modelled 88.3 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 76 c1wa1X_ not modelled 87.9 8 PDB header:reductase Chain: X: PDB Molecule:dissimilatory copper-containing nitrite PDBTitle: crystal structure of h313q mutant of alcaligenes2 xylosoxidans nitrite reductase 77 d1ndsa2 not modelled 87.8 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 78 c1mzzC_ not modelled 87.2 11 PDB header:oxidoreductase Chain: C: PDB Molecule:copper-containing nitrite reductase; PDBTitle: crystal structure of mutant (m182t)of nitrite reductase 79 c1sddB_ not modelled 86.7 11 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai 80 d2j5wa2 not modelled 86.2 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 81 c3cdzB_ not modelled 83.5 13 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii light chain; PDBTitle: crystal structure of human factor viii 82 c1zpuE_ not modelled 81.9 14 PDB header:oxidoreductase Chain: E: PDB Molecule:iron transport multicopper oxidase fet3; PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import 83 c3cdzA_ not modelled 81.7 11 PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor viii heavy chain; PDBTitle: crystal structure of human factor viii 84 d1hfua3 not modelled 80.0 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 85 d2bw4a1 not modelled 78.0 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 86 d1kbva1 not modelled 77.5 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 87 d1kyaa3 not modelled 75.3 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 88 c2zooA_ not modelled 74.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 89 d1ndsa1 not modelled 73.0 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 90 d1mzya1 not modelled 67.9 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 91 c1a65A_ not modelled 65.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: type-2 cu-depleted laccase from coprinus cinereus 92 d1gyca3 not modelled 62.5 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 93 c3zx1A_ not modelled 61.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, putative; PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase 94 c2r7eB_ not modelled 60.1 5 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii; PDBTitle: crystal structure analysis of coagulation factor viii 95 c3g5wC_ not modelled 59.6 15 PDB header:metal binding protein Chain: C: PDB Molecule:multicopper oxidase type 1; PDBTitle: crystal structure of blue copper oxidase from nitrosomonas europaea 96 d1kyaa2 not modelled 45.7 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 97 d1gyca2 not modelled 43.8 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 98 c1asqB_ not modelled 39.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:ascorbate oxidase; PDBTitle: x-ray structures and mechanistic implications of three functional2 derivatives of ascorbate oxidase from zucchini: reduced-, peroxide-,3 and azide-forms 99 d2q9oa3 not modelled 37.8 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 100 c1gycA_ not modelled 37.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase 2; PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions 101 c2zwnA_ not modelled 36.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:two-domain type laccase; PDBTitle: crystal structure of the novel two-domain type laccase from a2 metagenome 102 c3ppsD_ not modelled 35.9 14 PDB header:oxidoreductase Chain: D: PDB Molecule:laccase; PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria 103 d1h9aa1 not modelled 35.9 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 104 c2xu9A_ not modelled 35.6 12 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: crystal structure of laccase from thermus thermophilus hb27 105 c2q9oA_ not modelled 34.5 19 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase-1; PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase 106 d1qkia1 not modelled 34.0 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 107 d1hfua2 not modelled 32.2 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 108 d1ws8a_ not modelled 31.9 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 109 c1of0A_ not modelled 31.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:spore coat protein a; PDBTitle: crystal structure of bacillus subtilis cota after 1h2 soaking with ebs 110 c1x9rA_ not modelled 31.6 20 PDB header:electron transport Chain: A: PDB Molecule:umecyanin; PDBTitle: umecyanin from horse raddish- crystal structure of the2 oxidised form 111 c1jerA_ not modelled 27.8 16 PDB header:electron transport Chain: A: PDB Molecule:cucumber stellacyanin; PDBTitle: cucumber stellacyanin, cu2+, ph 7.0 112 d1jera_ not modelled 27.8 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 113 c3kw8A_ not modelled 26.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative copper oxidase; PDBTitle: two-domain laccase from streptomyces coelicolor at 2.3 a resolution 114 d1pgsa2 not modelled 25.3 13 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:PHM/PNGase F Family:Glycosyl-asparaginase 115 c3abgA_ not modelled 24.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:bilirubin oxidase; PDBTitle: x-ray crystal analysis of bilirubin oxidase from myrothecium2 verrucaria at 2.3 angstrom resolution using a twin crystal 116 c2jf1A_ not modelled 23.4 14 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide 117 d1v10a2 not modelled 22.3 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 118 d1n1ta2 not modelled 22.0 32 Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases) 119 d1v10a3 not modelled 21.6 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0