Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Y	S	I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	D	G	V	I	T	R	R	F	L	V	P	T	P	F	R	P	A	T	A	I	T	E	A	W	E	T	L	R	E	G	L	E	T	T	P	F	L	T	L	T
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	Y	G	R	Q	L	V	D	F	A	D	K	Q	V	T	E	I	S	C	H	G	L	G	A	R	F	L	A	P	A	T	R	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	G	N	L	C	D	F	L	M	N	D
Secondary structure
SS confidence
Disorder																																																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	C	A	A	G	T	G	R	F	L	E	V	I	S	R	T	L	G	T	S	V	E	Q	L	D	S	I	T	E	N	V	T	P	H	A	I	T	S	M	C	T	V	F	A	E	S	E	A	I	S	L	R	S	A	G	V	A	P	E	A
Secondary structure
SS confidence
Disorder			?				?																								?	?	?	?		?																			?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	A	R	L	S	C	E	A	P	I	L	F	T	G	G	V	S	H	C	Q	K	F	A	R	M	L	E	S	H	L	R	M	P	V	N	T	H	P	D	A	Q	F	A	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence		A	I	G	A	A	V	I	G	Q	R	V	R	T	R	R
Secondary structure
SS confidence
Disorder													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1hux chain A Region: 2 - 254 Aligned: 252 Modelled: 253 Confidence: 100.0% Identity: 42% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 2ews chain A domain 1 Region: 1 - 249 Aligned: 234 Modelled: 249 Confidence: 100.0% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Fumble-like Phyre2 PDB 3h1q chain B Region: 2 - 248 Aligned: 219 Modelled: 226 Confidence: 100.0% Identity: 18% PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans Phyre2 PDB 2ivo chain C Region: 2 - 255 Aligned: 251 Modelled: 254 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Phyre2 PDB 3eno chain B Region: 2 - 255 Aligned: 251 Modelled: 254 Confidence: 99.9% Identity: 17% PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 Phyre2 PDB 3en9 chain B Region: 2 - 246 Aligned: 239 Modelled: 245 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein Phyre2 PDB 2i7p chain A Region: 5 - 246 Aligned: 232 Modelled: 242 Confidence: 99.9% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa Phyre2 PDB 3smp chain A Region: 5 - 250 Aligned: 236 Modelled: 246 Confidence: 99.9% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha Phyre2 PDB 2e2p chain A Region: 1 - 251 Aligned: 247 Modelled: 248 Confidence: 99.8% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp Phyre2 PDB 2v7y chain A Region: 1 - 248 Aligned: 245 Modelled: 248 Confidence: 99.8% Identity: 22% PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state Phyre2 PDB 3d2f chain C Region: 4 - 249 Aligned: 243 Modelled: 246 Confidence: 99.8% Identity: 16% PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 Phyre2 PDB 1jcg chain A Region: 1 - 250 Aligned: 250 Modelled: 250 Confidence: 99.7% Identity: 16% PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp Phyre2 PDB 3gbt chain A Region: 1 - 249 Aligned: 248 Modelled: 248 Confidence: 99.7% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus Phyre2 PDB 2kho chain A Region: 4 - 248 Aligned: 245 Modelled: 245 Confidence: 99.7% Identity: 20% PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate Phyre2 PDB 1mwm chain A Region: 4 - 248 Aligned: 239 Modelled: 245 Confidence: 99.7% Identity: 15% PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Phyre2 PDB 2v7z chain A Region: 4 - 253 Aligned: 248 Modelled: 250 Confidence: 99.7% Identity: 19% PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state Phyre2 PDB 3hz6 chain A Region: 1 - 249 Aligned: 247 Modelled: 248 Confidence: 99.7% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum Phyre2 PDB 1dkg chain D Region: 4 - 248 Aligned: 243 Modelled: 243 Confidence: 99.7% Identity: 21% PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak Phyre2 PDB 3iuc chain C Region: 1 - 253 Aligned: 253 Modelled: 253 Confidence: 99.7% Identity: 19% PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp Phyre2 PDB 1hpm chain A Region: 4 - 250 Aligned: 244 Modelled: 247 Confidence: 99.7% Identity: 18% PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site Phyre2 1 d1huxa_ 2 d2ewsa1 3 c3h1qB_ 4 c2ivoC_ 5 c3enoB_ 6 c3en9B_ 7 c2i7pA_ 8 c3smpA_ 9 c2e2pA_ 10 c2v7yA_ 11 c3d2fC_ 12 c1jcgA_ 13 c3gbtA_ 14 c2khoA_ 15 c1mwmA_ 16 c2v7zA_ 17 c3hz6A_ 18 c1dkgD_ 19 c3iucC_ 20 c1hpmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1huxa_ 100.0 42 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 2 d2ewsa1 100.0 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 3 c3h1qB_ 100.0 18 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 4 c2ivoC_ 99.9 15 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 5 c3enoB_ 99.9 17 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 6 c3en9B_ 99.9 18 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 7 c2i7pA_ 99.9 16 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 8 c3smpA_ 99.9 17 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha 9 c2e2pA_ 99.8 17 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 10 c2v7yA_ 99.8 22 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 11 c3d2fC_ 99.8 16 PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 12 c1jcgA_ 99.7 16 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 13 c3gbtA_ 99.7 17 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 14 c2khoA_ 99.7 20 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate 15 c1mwmA_ 99.7 15 PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form 16 c2v7zA_ 99.7 19 PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state 17 c3hz6A_ 99.7 24 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 18 c1dkgD_ 99.7 21 PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 19 c3iucC_ 99.7 19 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp 20 c1hpmA_ 99.7 18 PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site 21 c1e4gT_ not modelled 99.7 17 PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima 22 c3ifrB_ not modelled 99.6 24 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 23 c3eo3B_ not modelled 99.6 13 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 24 c2zf5O_ not modelled 99.6 19 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 25 c3g25B_ not modelled 99.6 16 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 26 c1glbG_ not modelled 99.6 13 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 27 c2nlxA_ not modelled 99.6 22 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 28 c3i8bA_ not modelled 99.6 25 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 29 c2cgkB_ not modelled 99.6 16 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 30 c3flcX_ not modelled 99.6 17 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 31 c2dpnB_ not modelled 99.6 17 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 32 c2w40C_ not modelled 99.6 13 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 33 c2ap1A_ not modelled 99.6 19 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 34 c2d4wA_ not modelled 99.6 20 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 35 c3gg4B_ not modelled 99.5 21 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 36 c2ch5D_ not modelled 99.5 17 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 37 c2d0oA_ not modelled 99.5 18 PDB header:chaperone Chain: A: PDB Molecule:diol dehydratase-reactivating factor large PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+ 38 c2aa4B_ not modelled 99.5 19 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 39 d1jcea2 not modelled 99.5 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 40 c3ezwD_ not modelled 99.5 13 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 41 d2i7na2 not modelled 99.5 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 42 c1zc6A_ not modelled 99.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 43 c3jvpA_ not modelled 99.5 21 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 44 d2i7pa1 not modelled 99.4 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 45 d1dkgd2 not modelled 99.4 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 46 c3vgkB_ not modelled 99.4 18 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 47 d1bupa2 not modelled 99.4 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 48 c2qm1D_ not modelled 99.4 17 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 49 d2e8aa2 not modelled 99.4 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 50 c2ychA_ not modelled 99.4 19 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 51 c2gupA_ not modelled 99.4 17 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 52 d1e4ft2 not modelled 99.4 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 53 c1zbsA_ not modelled 99.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 54 c2fsnB_ not modelled 99.3 17 PDB header:structural protein Chain: B: PDB Molecule:hypothetical protein ta0583; PDBTitle: crystal structure of ta0583, an archaeal actin homolog, complex with2 adp 55 c3htvA_ not modelled 99.3 14 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 56 c3r8eA_ not modelled 99.3 17 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 57 c3js6A_ not modelled 99.2 17 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein 58 c1o1f4_ not modelled 99.2 17 PDB header:contractile protein Chain: 4: PDB Molecule:skeletal muscle actin; PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle 59 c1z05A_ not modelled 99.2 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 60 c1xc3A_ not modelled 99.2 19 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 61 d2zgya2 not modelled 99.2 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 62 c1z6rC_ not modelled 99.1 14 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 63 c1sazA_ not modelled 99.1 15 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 64 c3dwlB_ not modelled 99.0 14 PDB header:structural protein Chain: B: PDB Molecule:actin-related protein 3; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 65 c1zxoB_ not modelled 99.0 18 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 66 c3tsuA_ not modelled 98.9 20 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 67 d2p3ra2 not modelled 98.8 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 68 d2fsja1 not modelled 98.8 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ta0583-like 69 d1r59o2 not modelled 98.7 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 70 c3cqyA_ not modelled 98.7 17 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 71 c1xupO_ not modelled 98.7 18 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 72 d1sz2a1 not modelled 98.7 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 73 c2p9lA_ not modelled 98.6 21 PDB header:structural protein Chain: A: PDB Molecule:actin-like protein 3; PDBTitle: crystal structure of bovine arp2/3 complex 74 c3cetA_ not modelled 98.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: crystal structure of the pantheonate kinase-like protein2 q6m145 at the resolution 1.8 a. northeast structural3 genomics consortium target mrr63 75 c2hoeA_ not modelled 98.6 17 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 76 d2hf3a2 not modelled 98.4 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 77 d1nm1a2 not modelled 98.4 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 78 d2fxua2 not modelled 98.3 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 79 c3mcpA_ not modelled 98.3 17 PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution 80 d1zc6a1 not modelled 98.3 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 81 d2p3ra1 not modelled 98.3 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 82 c3p4iA_ not modelled 98.2 21 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 83 c3qbwA_ not modelled 98.2 17 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate 84 c1woqB_ not modelled 98.1 19 PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution 85 d2ch5a1 not modelled 98.1 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 86 d1yaga2 not modelled 98.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 87 c2q2rA_ not modelled 98.0 13 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 88 c1x3nA_ not modelled 97.9 23 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 89 d2ch5a2 not modelled 97.8 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 90 d1saza2 not modelled 97.8 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 91 d1zc6a2 not modelled 97.8 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 92 d1k8ka2 not modelled 97.8 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 93 d1r59o1 not modelled 97.7 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 94 c3lm2B_ not modelled 97.6 13 PDB header:transferase Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution 95 c3djcA_ not modelled 97.6 18 PDB header:transferase Chain: A: PDB Molecule:type iii pantothenate kinase; PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila 96 d2gupa1 not modelled 97.6 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 97 c3h6eB_ not modelled 97.6 23 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans 98 c1t6dB_ not modelled 97.5 15 PDB header:hydrolase Chain: B: PDB Molecule:exopolyphosphatase; PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant 99 c3khyA_ not modelled 97.5 20 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 100 c1tuuA_ not modelled 97.5 19 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 101 c3qb0C_ not modelled 97.5 18 PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp 102 c2iirJ_ not modelled 97.4 22 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 103 d2i7pa2 not modelled 97.4 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 104 c2p9kB_ not modelled 97.3 22 PDB header:structural protein Chain: B: PDB Molecule:actin-like protein 2; PDBTitle: crystal structure of bovine arp2/3 complex co-crystallized2 with atp and crosslinked with glutaraldehyde 105 d1q18a1 not modelled 97.2 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 106 d2ap1a2 not modelled 97.2 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 107 d1z6ra2 not modelled 97.1 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 108 d1g99a2 not modelled 97.0 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 109 d2aa4a1 not modelled 97.0 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 110 d2ap1a1 not modelled 96.9 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 111 d2i7na1 not modelled 96.9 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 112 c2h3gX_ not modelled 96.9 17 PDB header:biosynthetic protein Chain: X: PDB Molecule:biosynthetic protein; PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis 113 d2aa4a2 not modelled 96.8 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 114 d2e1za2 not modelled 96.8 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 115 d1z05a3 not modelled 96.7 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 116 c1nbwA_ not modelled 96.7 19 PDB header:hydrolase Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit; PDBTitle: glycerol dehydratase reactivase 117 d1zbsa1 not modelled 96.7 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 118 c3cerD_ not modelled 96.6 19 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:possible exopolyphosphatase-like protein; PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13 119 d1k8kb1 not modelled 96.6 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 120 d1xc3a1 not modelled 96.6 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0