Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	I	Q	S	L	L	D	Y	I	S	V	T	P	D	I	R	Q	Q	G	K	V	K	H	K	L	S	A	I	L	F	L	T	V	C	A	V	I	A	G	A	D	E	W	Q	E	I	E	D	F	G	H	E	R	L	E	W	L	K	K
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	G	D	F	D	N	G	I	P	V	D	D	T	I	A	R	V	V	S	N	I	D	S	L	A	F	E	K	M	F	I	E	W	M	Q	E	C	H	E	I	T	D	G	E	I	I	A	I	D	G	K	T	I	R	G	S	F	D	K	G
Secondary structure
SS confidence
Disorder																																								?	?																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	R	K	G	A	I	H	M	V	S	A	F	S	N	E	N	G	V	V	L	G	Q	V	K	T	E	A	K	S	N	E	I	T	A	I	P	E	L	L	N	L	L	Y	L	K	K	N	L	I	T	I	D	A	M	G	C	Q	K	D	I
Secondary structure
SS confidence
Disorder		?	?																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	S	K	I	K	D	K	K	A	D	Y	L	L	A	V	K	G	N	Q	G	K	L	H	H	A	F	E	E	K	F	P	V	N	V	F	S	N	Y	K	G	D	S	F	S	T	Q	E	I	S	H	G	R	K	E	T	R	L	H	I	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	N	V	T	R	L	N	F	C	D	F	E	F	E	W	K	G	L	K	K	L	C	V	A	L	S	F	R	Q	K	K	E	D	K	S	A	E	G	V	S	I	R	Y	Y	I	S	S	K	D	M	D	A	K	E	F	A	H	A	I	R
Secondary structure
SS confidence
Disorder																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	H	W	L	I	E	H	S	L	H	W	V	L	D	V	K	M	N	E	D	A	S	R	I	R	R	G	N	A	A	E	I	I	S	G	I	K	K	M	A	L	N	L	L	R	D	C	K	D	I	K	G	E	E	E	K	K	E	G	C
Secondary structure
SS confidence
Disorder																																															?		?	?	?	?	?	?	?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.
Sequence		V	K	H	R	E	R	S	S	E	V	H	F	L	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1b7e chain A Region: 83 - 345 Aligned: 245 Modelled: 263 Confidence: 98.1% Identity: 11% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 1mus chain A Region: 75 - 345 Aligned: 264 Modelled: 271 Confidence: 98.0% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Ribonuclease H-like Family: Transposase inhibitor (Tn5 transposase) Phyre2 PDB 2v9v chain A domain 2 Region: 44 - 110 Aligned: 67 Modelled: 67 Confidence: 79.2% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal fragment of elongation factor SelB Phyre2 PDB 2v9v chain A Region: 44 - 110 Aligned: 67 Modelled: 67 Confidence: 66.0% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) Phyre2 PDB 2ezh chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 52.4% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 2ezi chain A Region: 68 - 89 Aligned: 22 Modelled: 22 Confidence: 49.6% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 3hef chain B Region: 30 - 92 Aligned: 46 Modelled: 48 Confidence: 39.9% Identity: 17% PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit Phyre2 PDB 6pax chain A Region: 45 - 81 Aligned: 37 Modelled: 37 Confidence: 36.1% Identity: 27% PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Phyre2 PDB 2kzv chain A Region: 18 - 82 Aligned: 61 Modelled: 65 Confidence: 29.9% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a Phyre2 PDB 2vp8 chain A Region: 145 - 209 Aligned: 63 Modelled: 65 Confidence: 24.3% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 Phyre2 PDB 1osn chain A Region: 23 - 97 Aligned: 75 Modelled: 75 Confidence: 20.4% Identity: 7% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nucleotide and nucleoside kinases Phyre2 PDB 2ply chain B Region: 44 - 110 Aligned: 67 Modelled: 67 Confidence: 19.1% Identity: 16% PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. Phyre2 PDB 3nsw chain A Region: 190 - 199 Aligned: 10 Modelled: 10 Confidence: 17.5% Identity: 70% PDB header:immune system Chain: A: PDB Molecule:excretory-secretory protein 2; PDBTitle: crystal structure of ancylostoma ceylanicum excretory-secretory2 protein 2 Phyre2 PDB 3a52 chain A Region: 130 - 194 Aligned: 65 Modelled: 65 Confidence: 17.1% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. Phyre2 PDB 1ajz chain A Region: 151 - 209 Aligned: 57 Modelled: 59 Confidence: 16.1% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: Dihydropteroate synthetase-like Family: Dihydropteroate synthetase Phyre2 PDB 3e2d chain B Region: 130 - 194 Aligned: 65 Modelled: 65 Confidence: 15.9% Identity: 12% PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase Phyre2 PDB 3mx7 chain A Region: 98 - 115 Aligned: 18 Modelled: 18 Confidence: 15.3% Identity: 17% PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd Phyre2 PDB 3orc chain A Region: 170 - 197 Aligned: 28 Modelled: 28 Confidence: 14.4% Identity: 21% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 2y5s chain A Region: 151 - 199 Aligned: 47 Modelled: 49 Confidence: 14.4% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. Phyre2 PDB 1pdn chain C Region: 54 - 78 Aligned: 25 Modelled: 25 Confidence: 13.6% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 1 d1b7ea_ 2 d1musa_ 3 d2v9va2 4 c2v9vA_ 5 d2ezha_ 6 d2ezia_ 7 c3hefB_ 8 c6paxA_ 9 c2kzvA_ 10 c2vp8A_ 11 d1osna_ 12 c2plyB_ 13 c3nswA_ 14 c3a52A_ 15 d1ajza_ 16 c3e2dB_ 17 c3mx7A_ 18 d3orca_ 19 c2y5sA_ 20 d1pdnc_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1b7ea_ 98.1 11 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 2 d1musa_ 98.0 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Transposase inhibitor (Tn5 transposase) 3 d2v9va2 79.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 4 c2v9vA_ 66.0 16 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 5 d2ezha_ 52.4 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 6 d2ezia_ 49.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 7 c3hefB_ 39.9 17 PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit 8 c6paxA_ 36.1 27 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 9 c2kzvA_ 29.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of cv_0373(175-257) protein from2 chromobacterium violaceum, northeast structural genomics consortium3 target cvr118a 10 c2vp8A_ 24.3 19 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 11 d1osna_ 20.4 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 12 c2plyB_ 19.1 16 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 13 c3nswA_ 17.5 70 PDB header:immune system Chain: A: PDB Molecule:excretory-secretory protein 2; PDBTitle: crystal structure of ancylostoma ceylanicum excretory-secretory2 protein 2 14 c3a52A_ 17.1 15 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 15 d1ajza_ 16.1 11 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 16 c3e2dB_ 15.9 12 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 17 c3mx7A_ 15.3 17 PDB header:apoptosis Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1; PDBTitle: crystal structure analysis of human faim-ntd 18 d3orca_ 14.4 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 19 c2y5sA_ 14.4 17 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 20 d1pdnc_ 13.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 21 d1iyxa1 not modelled 13.3 25 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 22 c3r1iB_ not modelled 13.1 25 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain type dehydrogenase/reductase; PDBTitle: crystal structure of a short-chain type dehydrogenase/reductase from2 mycobacterium marinum 23 c1hj0A_ not modelled 12.2 25 PDB header:actin binding peptide Chain: A: PDB Molecule:thymosin beta9; PDBTitle: thymosin beta9 24 d1eyea_ not modelled 11.5 19 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 25 d1dlwa_ not modelled 10.5 13 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 26 c2iucB_ not modelled 10.0 23 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 27 d1uuza_ not modelled 9.7 15 Fold:Inhibitor of vertebrate lysozyme, Ivy Superfamily:Inhibitor of vertebrate lysozyme, Ivy Family:Inhibitor of vertebrate lysozyme, Ivy 28 d1d1la_ not modelled 9.6 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 29 d2hxja1 not modelled 9.5 14 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 30 d2gm3a1 not modelled 9.5 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 31 c3rf7A_ not modelled 9.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 32 c3emkA_ not modelled 9.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis 33 d2a22a1 not modelled 9.1 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 34 d2fgga1 not modelled 9.0 31 Fold:dsRBD-like Superfamily:Rv2632c-like Family:Rv2632c-like 35 c2kvcA_ not modelled 8.8 27 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 36 d1mpga1 not modelled 8.8 8 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 37 c3douA_ not modelled 8.8 20 PDB header:transferase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j; PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1 38 c2pijB_ not modelled 8.6 16 PDB header:transcription Chain: B: PDB Molecule:prophage pfl 6 cro; PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5 39 d4croa_ not modelled 8.3 24 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 40 c3pk0B_ not modelled 8.3 12 PDB header:oxidoreductase Chain: B: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: crystal structure of short-chain dehydrogenase/reductase sdr from2 mycobacterium smegmatis 41 d1e8qa_ not modelled 8.2 13 Fold:Cellulose docking domain, dockering Superfamily:Cellulose docking domain, dockering Family:Cellulose docking domain, dockering 42 d2ezla_ not modelled 8.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 43 d1vi7a1 not modelled 8.0 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 44 d1xb4a2 not modelled 7.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 45 c2rfpA_ not modelled 7.8 10 PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution 46 c3gk0H_ not modelled 7.2 24 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 47 c2z1nA_ not modelled 7.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase; PDBTitle: crystal structure of ape0912 from aeropyrum pernix k1 48 d3bpya1 not modelled 7.0 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 49 d1s69a_ not modelled 7.0 20 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 50 c2hxjF_ not modelled 7.0 14 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein of unknown function nmb1681 from2 neisseria meningitidis mc58, possible nucleic acid binding protein 51 d1cyda_ not modelled 7.0 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 52 d2c6ya1 not modelled 6.8 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 53 d2ptza1 not modelled 6.8 20 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 54 c3l1pA_ not modelled 6.7 17 PDB header:transcription/dna Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1; PDBTitle: pou protein:dna complex 55 c1c94B_ not modelled 6.7 38 PDB header:gene regulation Chain: B: PDB Molecule:retro-gcn4 leucine zipper; PDBTitle: reversing the sequence of the gcn4 leucine zipper does not2 affect its fold. 56 c3aq8A_ not modelled 6.5 13 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 57 c3ol4B_ not modelled 6.5 35 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 58 c3ak4C_ not modelled 6.4 13 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-dependent quinuclidinone reductase; PDBTitle: crystal structure of nadh-dependent quinuclidinone reductase from2 agrobacterium tumefaciens 59 c2wdzD_ not modelled 6.4 18 PDB header:oxidoreductase Chain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol 60 d2czda1 not modelled 6.3 22 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 61 c1e17A_ not modelled 6.3 7 PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4) 62 c3cxtA_ not modelled 6.2 24 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase with different specificities; PDBTitle: quaternary complex structure of gluconate 5-dehydrogenase from2 streptococcus suis type 2 63 d1w6ta1 not modelled 6.2 24 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 64 c3b9nB_ not modelled 6.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) 65 c2kl8A_ not modelled 6.0 22 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 66 d1l1ya_ not modelled 6.0 57 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 67 c1l2aD_ not modelled 6.0 57 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 68 c1qcrD_ not modelled 5.9 6 PDB header: PDB COMPND: 69 d1g31a_ not modelled 5.8 20 Fold:GroES-like Superfamily:GroES-like Family:GroES 70 c3gdfA_ not modelled 5.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase; PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum. 71 d2abka_ not modelled 5.4 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 72 c2o2sA_ not modelled 5.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: the structure of t. gondii enoyl acyl carrier protein reductase in2 complex with nad and triclosan 73 d1m5wa_ not modelled 5.4 24 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 74 c3cwbQ_ not modelled 5.3 5 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 75 c1htrP_ not modelled 5.3 20 PDB header:aspartyl protease Chain: P: PDB Molecule:progastricsin (pro segment); PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution 76 d1un2a_ not modelled 5.2 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 77 c3co7C_ not modelled 5.2 11 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 78 d2giab1 not modelled 5.2 50 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Guide RNA binding protein gBP 79 c2giaB_ not modelled 5.2 50 PDB header:translation Chain: B: PDB Molecule:mitochondrial rna-binding protein 1; PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2 80 d2i7pa1 not modelled 5.2 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 81 c3gafF_ not modelled 5.1 15 PDB header:oxidoreductase Chain: F: PDB Molecule:7-alpha-hydroxysteroid dehydrogenase; PDBTitle: 2.2a crystal structure of 7-alpha-hydroxysteroid2 dehydrogenase from brucella melitensis 82 d2c4ka1 not modelled 5.1 23 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 83 c3hluA_ not modelled 5.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 84 c2bmbA_ not modelled 5.1 20 PDB header:transferase Chain: A: PDB Molecule:folic acid synthesis protein fol1; PDBTitle: x-ray structure of the bifunctional 6-hydroxymethyl-7,8-2 dihydroxypterin pyrophosphokinase dihydropteroate synthase3 from saccharomyces cerevisiae 85 d1gpqa_ not modelled 5.1 16 Fold:Inhibitor of vertebrate lysozyme, Ivy Superfamily:Inhibitor of vertebrate lysozyme, Ivy Family:Inhibitor of vertebrate lysozyme, Ivy 86 d2o23a1 not modelled 5.1 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 87 c2x4mD_ not modelled 5.1 27 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 88 d1g9ga_ not modelled 5.0 26 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0