Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39404
DateThu Jan 5 12:00:37 GMT 2012
Unique Job ID531791b0bc118dee

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1zn2A_
Top template information
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
Confidence and coverage
Confidence:100.0% Coverage: 88%
198 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQESFQDAMSRISFAAVI
Secondary structure 



















SS confidence 



























































Disorder  ???????




















































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   .........70.........80.........90.........100.........110.........120
Sequence  FSFSAMRSERREGLSCLTELAIKFPRTRRLVIADDDIEARLIGSLSPSPLDGVLSKASTL
Secondary structure 


























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Disorder 




????


















































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   .........130.........140.........150.........160.........170.........180
Sequence  EIFHQELFLSLNGVRQATDRLNNQWYINQSRTLSPTEREILRFMSRGYSMTQIAEQLKRN
Secondary structure 

















SS confidence 



























































Disorder 











?


?



?????????????





















??

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   .........190.........200.........210.........220.....
Sequence  IKTIRAHKFNVMSKLGVSSDAGLLEAADILLCMRHCETSNVLHPY
Secondary structure 



















SS confidence 












































Disorder 
































?

?????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1zn2 chain A

3D model

Region: 7 - 215
Aligned: 198
Modelled: 206
Confidence: 100.0%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 3c3w chain B

3D model

Region: 8 - 210
Aligned: 199
Modelled: 203
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 1rnl chain A

3D model

Region: 10 - 216
Aligned: 195
Modelled: 203
Confidence: 100.0%
Identity: 16%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 3kln chain C

3D model

Region: 7 - 207
Aligned: 198
Modelled: 201
Confidence: 99.9%
Identity: 14%
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst

Phyre2

PDB 1kgs chain A

3D model

Region: 10 - 204
Aligned: 189
Modelled: 185
Confidence: 99.9%
Identity: 15%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 1ys7 chain B

3D model

Region: 8 - 199
Aligned: 186
Modelled: 189
Confidence: 99.8%
Identity: 14%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2gwr chain A

3D model

Region: 7 - 199
Aligned: 186
Modelled: 183
Confidence: 99.8%
Identity: 10%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 3r0j chain A

3D model

Region: 7 - 200
Aligned: 187
Modelled: 191
Confidence: 99.7%
Identity: 18%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 2oqr chain A

3D model

Region: 10 - 199
Aligned: 183
Modelled: 187
Confidence: 99.7%
Identity: 17%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 2hqr chain A

3D model

Region: 10 - 199
Aligned: 180
Modelled: 187
Confidence: 99.7%
Identity: 16%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 3szt chain B

3D model

Region: 119 - 219
Aligned: 96
Modelled: 101
Confidence: 99.7%
Identity: 22%
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone

Phyre2

PDB 2q0o chain A

3D model

Region: 141 - 214
Aligned: 71
Modelled: 74
Confidence: 99.7%
Identity: 23%
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing

Phyre2

PDB 1p2f chain A

3D model

Region: 8 - 200
Aligned: 184
Modelled: 192
Confidence: 99.7%
Identity: 10%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 1h0m chain D

3D model

Region: 147 - 216
Aligned: 65
Modelled: 70
Confidence: 99.7%
Identity: 23%
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna

Phyre2

PDB 3qp5 chain C

3D model

Region: 144 - 210
Aligned: 67
Modelled: 67
Confidence: 99.7%
Identity: 30%
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)

Phyre2

PDB 1s8n chain A

3D model

Region: 9 - 196
Aligned: 182
Modelled: 188
Confidence: 99.6%
Identity: 12%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1p4w chain A

3D model

Region: 141 - 216
Aligned: 71
Modelled: 71
Confidence: 99.6%
Identity: 39%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: C-terminal effector domain of the bipartite response regulators
Family: GerE-like (LuxR/UhpA family of transcriptional regulators)

Phyre2

PDB 1zlj chain E

3D model

Region: 148 - 210
Aligned: 63
Modelled: 63
Confidence: 99.6%
Identity: 25%
PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain

Phyre2

PDB 2krf chain B

3D model

Region: 147 - 216
Aligned: 67
Modelled: 70
Confidence: 99.6%
Identity: 22%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a

Phyre2

PDB 3clo chain C

3D model

Region: 153 - 207
Aligned: 55
Modelled: 55
Confidence: 99.6%
Identity: 36%
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution

Phyre2
1

c1zn2A_
2

c3c3wB_
3

c1rnlA_
4

c3klnC_
5

c1kgsA_
6

c1ys7B_
7

c2gwrA_
8

c3r0jA_
9

c2oqrA_
10

c2hqrA_
11

c3sztB_
12

c2q0oA_
13

c1p2fA_
14

c1h0mD_
15

c3qp5C_
16

d1s8na_
17

d1p4wa_
18

c1zljE_
19

c2krfB_
20

c3cloC_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zn2A_



100.0 17 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
2c3c3wB_



100.0 16 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
3c1rnlA_



100.0 16 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
4c3klnC_



99.9 14 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
5c1kgsA_



99.9 15 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
6c1ys7B_



99.8 14 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
7c2gwrA_



99.8 10 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
8c3r0jA_



99.7 18 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
9c2oqrA_



99.7 17 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
10c2hqrA_



99.7 16 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
11c3sztB_



99.7 22 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
12c2q0oA_



99.7 23 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
13c1p2fA_



99.7 10 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
14c1h0mD_



99.7 23 PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
15c3qp5C_



99.7 30 PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
16d1s8na_



99.6 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
17d1p4wa_



99.6 39 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
18c1zljE_



99.6 25 PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
19c2krfB_



99.6 22 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
20c3cloC_



99.6 36 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
21d1a04a1



not modelled 99.6 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
22d1l3la1



not modelled 99.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
23d1yioa1



not modelled 99.6 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
24d1fsea_



not modelled 99.6 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
25c1x3uA_



not modelled 99.5 30 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
26c2rnjA_



not modelled 99.5 31 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
27c2jpcA_



not modelled 99.5 39 PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
28c3cz5B_



not modelled 99.5 9 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
29c3eulB_



not modelled 99.5 14 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
30c3rqiA_



not modelled 99.5 13 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
31d1a04a2



not modelled 99.4 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
32c3b2nA_



not modelled 99.4 11 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
33d1dbwa_



not modelled 99.4 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
34d1krwa_



not modelled 99.4 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
35c3eq2A_



not modelled 99.4 12 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
36c2rjnA_



not modelled 99.4 22 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
37c1a2oB_



not modelled 99.4 10 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
38c2ayxA_



not modelled 99.3 9 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
39c1ny5A_



not modelled 99.3 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
40d1jbea_



not modelled 99.3 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
41d1mvoa_



not modelled 99.3 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
42c3cu5B_



not modelled 99.3 8 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
43d1peya_



not modelled 99.3 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
44d2ayxa1



not modelled 99.3 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
45d1ny5a1



not modelled 99.3 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
46c1w25B_



not modelled 99.3 11 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
47d2a9pa1



not modelled 99.3 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
48c3hv2B_



not modelled 99.3 15 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
49d1u0sy_



not modelled 99.3 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
50c3dzdA_



not modelled 99.3 9 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
51c2jrlA_



not modelled 99.3 8 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
52c3snkA_



not modelled 99.3 12 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
53c3breA_



not modelled 99.3 12 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
54d1qkka_



not modelled 99.3 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
55d1kgsa2



not modelled 99.3 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
56c2zwmA_



not modelled 99.3 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
57c3i5aA_



not modelled 99.3 9 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
58c2qr3A_



not modelled 99.3 13 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
59d1ys7a2



not modelled 99.2 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
60c3cfyA_



not modelled 99.2 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
61d1a2oa1



not modelled 99.2 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
62d1p6qa_



not modelled 99.2 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
63c3crnA_



not modelled 99.2 8 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
64d1yioa2



not modelled 99.2 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
65d2pl1a1



not modelled 99.2 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
66c3nhzA_



not modelled 99.2 8 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
67c3t6kB_



not modelled 99.2 12 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
68d1dz3a_



not modelled 99.2 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
69c2qv0A_



not modelled 99.2 10 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
70c3h1gA_



not modelled 99.2 9 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
71c3hdgE_



not modelled 99.2 9 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
72c3kcnA_



not modelled 99.2 8 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
73c3lteH_



not modelled 99.2 11 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
74d1zh2a1



not modelled 99.2 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
75c3jteA_



not modelled 99.2 12 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
76d1xhfa1



not modelled 99.1 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
77c3hzhA_



not modelled 99.1 10 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
78c3hdvB_



not modelled 99.1 8 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
79d1zesa1



not modelled 99.1 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
80c3f6cB_



not modelled 99.1 10 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
81d1w25a1



not modelled 99.1 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
82c3gt7A_



not modelled 99.1 11 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
83d1k66a_



not modelled 99.1 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
84c2qzjC_



not modelled 99.1 5 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
85c3khtA_



not modelled 99.1 9 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
86c3t8yA_



not modelled 99.1 11 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
87d1zgza1



not modelled 99.1 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
88d1heya_



not modelled 99.1 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
89c2zayA_



not modelled 99.1 7 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
90c2qvgA_



not modelled 99.1 12 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
91c3cnbC_



not modelled 99.1 5 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
92c3gl9B_



not modelled 99.1 14 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
93c3cg0A_



not modelled 99.1 8 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
94c2qsjB_



not modelled 99.0 10 PDB header:transcription
Chain: B: PDB Molecule:dna-binding response regulator, luxr family;
PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi
95c2qxyB_



not modelled 99.0 14 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
96c2jk1A_



not modelled 99.0 14 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
97c3hebB_



not modelled 99.0 12 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
98c3eodA_



not modelled 99.0 16 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
99c3ilhA_



not modelled 99.0 9 PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
100d1i3ca_



not modelled 99.0 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
101c3cg4A_



not modelled 99.0 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
102c3a0rB_



not modelled 99.0 12 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
103c3grcD_



not modelled 99.0 13 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
104d1k68a_



not modelled 99.0 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
105c3c3mA_



not modelled 99.0 11 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
106d1p2fa2



not modelled 99.0 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
107c3m6mF_



not modelled 99.0 17 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
108c3ktoA_



not modelled 99.0 13 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica
109c3i42A_



not modelled 98.9 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
110c3mmnA_



not modelled 98.9 9 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
111d1w25a2



not modelled 98.9 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
112d2r25b1



not modelled 98.9 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
113c3kyiB_



not modelled 98.9 14 PDB header:transferase
Chain: B: PDB Molecule:chey6 protein;
PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides
114c2hqoA_



not modelled 98.9 18 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
115c3luaA_



not modelled 98.9 13 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
116c3eqzB_



not modelled 98.9 10 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea
117d1mb3a_



not modelled 98.9 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
118c2rdmB_



not modelled 98.9 9 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
119d1dcfa_



not modelled 98.9 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
120d2b4aa1



not modelled 98.9 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0