Phyre 2 alignment of P39404 with d1jhga_

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Job Description | P39404
Confidence | 92.27% | Date | Thu Jan 5 12:00:37 GMT 2012
Rank | 219 | Aligned Residues | 33
% Identity | 33% | Template | d1jhga_
SCOP info | DNA/RNA-binding 3-helical bundle | TrpR-like | Trp repressor, TrpR
Resolution | 1.30

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 153 | . | . | . | . | . |  |  |  |  |  |  |  | . | 160 | . | . |  | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | S | P | T | E | R | . | . | . | . | . | . | . | E | I | L | R | . | F | M | S | R | G | Y | S | M | T | Q | I | A | E | Q | L | K | R | N | I | K | T | I | R
Query Conservation |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | T | P | D | E | R | E | A | L | G | T | R | V | R | I | I | E | E | L | L | R | G | E | M | S | Q | R | E | L | K | N | E | L | G | A | G | I | A | T | I | T
Template Known Secondary structure |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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