Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	N	I	N	P	T	Q	T	A	A	W	Q	A	L	Q	K	H	F	D	E	M	K	D	V	T	I	A	D	L	F	A	K	D	G	D	R	F	S	K	F	S	A	T	F	D	D	Q	M	L	V	D	Y	S	K	N	R	I	T	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	T	L	A	K	L	Q	D	L	A	K	E	C	D	L	A	G	A	I	K	S	M	F	S	G	E	K	I	N	R	T	E	N	R	A	V	L	H	V	A	L	R	N	R	S	N	T	P	I	L	V	D	G	K	D	V	M	P	E	V
Secondary structure
SS confidence
Disorder																?																															?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	A	V	L	E	K	M	K	T	F	S	E	A	I	I	S	G	E	W	K	G	Y	T	G	K	A	I	T	D	V	V	N	I	G	I	G	G	S	D	L	G	P	Y	M	V	T	E	A	L	R	P	Y	K	N	H	L	N	M	H	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	S	N	V	D	G	T	H	I	A	E	V	L	K	K	V	N	P	E	T	T	L	F	L	V	A	S	K	T	F	T	T	Q	E	T	M	T	N	A	H	S	A	R	D	W	F	L	K	A	A	G	D	E	K	H	V	A	K	H	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	A	L	S	T	N	A	K	A	V	G	E	F	G	I	D	T	A	N	M	F	E	F	W	D	W	V	G	G	R	Y	S	L	W	S	A	I	G	L	S	I	V	L	S	I	G	F	D	N	F	V	E	L	L	S	G	A	H	A	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	K	H	F	S	T	T	P	A	E	K	N	L	P	V	L	L	A	L	I	G	I	W	Y	N	N	F	F	G	A	E	T	E	A	I	L	P	Y	D	Q	Y	M	H	R	F	A	A	Y	F	Q	Q	G	N	M	E	S	N	G	K	Y
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	D	R	N	G	N	V	V	D	Y	Q	T	G	P	I	I	W	G	E	P	G	T	N	G	Q	H	A	F	Y	Q	L	I	H	Q	G	T	K	M	V	P	C	D	F	I	A	P	A	I	T	H	N	P	L	S	D	H	H	Q	K	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?																																					?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	S	N	F	F	A	Q	T	E	A	L	A	F	G	K	S	R	E	V	V	E	Q	E	Y	R	D	Q	G	K	D	P	A	T	L	D	Y	V	V	P	F	K	V	F	E	G	N	R	P	T	N	S	I	L	L	R	E	I	T	P	F
Secondary structure
SS confidence
Disorder																	?									?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		S	L	G	A	L	I	A	L	Y	E	H	K	I	F	T	Q	G	V	I	L	N	I	F	T	F	D	Q	W	G	V	E	L	G	K	Q	L	A	N	R	I	L	P	E	L	K	D	D	K	E	I	S	S	H	D	S	S	T	N	G	L
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		I	N	R	Y	K	A	W	R	G
Secondary structure
SS confidence
Disorder							?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nbu chain C Region: 1 - 549 Aligned: 549 Modelled: 549 Confidence: 100.0% Identity: 100% PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase Phyre2 PDB 3hjb chain A Region: 1 - 548 Aligned: 548 Modelled: 548 Confidence: 100.0% Identity: 77% PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae. Phyre2 PDB 1iat chain A Region: 6 - 548 Aligned: 543 Modelled: 543 Confidence: 100.0% Identity: 66% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 1q50 chain A Region: 1 - 547 Aligned: 547 Modelled: 547 Confidence: 100.0% Identity: 59% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 1u0f chain A Region: 7 - 548 Aligned: 542 Modelled: 542 Confidence: 100.0% Identity: 64% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 1gzd chain A Region: 6 - 548 Aligned: 543 Modelled: 543 Confidence: 100.0% Identity: 66% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 1hm5 chain A Region: 6 - 548 Aligned: 543 Modelled: 543 Confidence: 100.0% Identity: 66% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 1t10 chain A Region: 6 - 547 Aligned: 542 Modelled: 542 Confidence: 100.0% Identity: 59% PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate Phyre2 PDB 2o2c chain B Region: 2 - 547 Aligned: 546 Modelled: 546 Confidence: 100.0% Identity: 58% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site Phyre2 PDB 2wu8 chain A Region: 5 - 549 Aligned: 535 Modelled: 537 Confidence: 100.0% Identity: 53% PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv Phyre2 PDB 3pr3 chain B Region: 4 - 547 Aligned: 537 Modelled: 544 Confidence: 100.0% Identity: 42% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate Phyre2 PDB 3ljk chain A Region: 9 - 547 Aligned: 533 Modelled: 534 Confidence: 100.0% Identity: 49% PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. Phyre2 PDB 3ujh chain B Region: 5 - 548 Aligned: 534 Modelled: 536 Confidence: 100.0% Identity: 45% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii Phyre2 PDB 1c7q chain A Region: 49 - 544 Aligned: 431 Modelled: 480 Confidence: 100.0% Identity: 25% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 3ff1 chain B Region: 48 - 544 Aligned: 432 Modelled: 475 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus Phyre2 PDB 2q8n chain B Region: 86 - 532 Aligned: 406 Modelled: 447 Confidence: 100.0% Identity: 25% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution Phyre2 PDB 1zzg chain B Region: 96 - 522 Aligned: 388 Modelled: 427 Confidence: 100.0% Identity: 25% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 Phyre2 PDB 1x9i chain A Region: 145 - 515 Aligned: 265 Modelled: 331 Confidence: 99.1% Identity: 16% Fold: SIS domain Superfamily: SIS domain Family: double-SIS domain Phyre2 PDB 3c3j chain A Region: 114 - 510 Aligned: 325 Modelled: 349 Confidence: 99.0% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli Phyre2 PDB 3eua chain D Region: 122 - 340 Aligned: 192 Modelled: 214 Confidence: 99.0% Identity: 17% PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution Phyre2 1 c3nbuC_ 2 c3hjbA_ 3 d1iata_ 4 d1q50a_ 5 d1u0fa_ 6 d1gzda_ 7 d1hm5a_ 8 c1t10A_ 9 c2o2cB_ 10 c2wu8A_ 11 c3pr3B_ 12 c3ljkA_ 13 c3ujhB_ 14 d1c7qa_ 15 c3ff1B_ 16 c2q8nB_ 17 c1zzgB_ 18 d1x9ia_ 19 c3c3jA_ 20 c3euaD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nbuC_ 100.0 100 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 2 c3hjbA_ 100.0 77 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae. 3 d1iata_ 100.0 66 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 4 d1q50a_ 100.0 59 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 5 d1u0fa_ 100.0 64 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 6 d1gzda_ 100.0 66 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 7 d1hm5a_ 100.0 66 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 8 c1t10A_ 100.0 59 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate 9 c2o2cB_ 100.0 58 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site 10 c2wu8A_ 100.0 53 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv 11 c3pr3B_ 100.0 42 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate 12 c3ljkA_ 100.0 49 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 13 c3ujhB_ 100.0 45 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii 14 d1c7qa_ 100.0 25 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 15 c3ff1B_ 100.0 22 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus 16 c2q8nB_ 100.0 25 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution 17 c1zzgB_ 100.0 25 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 18 d1x9ia_ 99.1 16 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 19 c3c3jA_ 99.0 12 PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli 20 c3euaD_ 99.0 17 PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution 21 c2a3nA_ not modelled 98.9 11 PDB header:sugar binding protein Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase; PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution 22 c3hbaA_ not modelled 98.8 12 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution 23 c3fkjA_ not modelled 98.8 16 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution 24 c2zj3A_ not modelled 98.8 12 PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase 25 c3g68A_ not modelled 98.7 15 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution 26 d1j5xa_ not modelled 98.7 11 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 27 c3knzA_ not modelled 98.6 13 PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution 28 c3i0zB_ not modelled 98.6 10 PDB header:isomerase Chain: B: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of putative putative tagatose-6-phosphate2 ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae3 tigr4 at 1.70 a resolution 29 c3fj1A_ not modelled 98.5 11 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution 30 c2puwA_ not modelled 98.5 13 PDB header:transferase Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans 31 c3odpA_ not modelled 98.5 18 PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of a putative tagatose-6-phosphate ketose/aldose2 isomerase (nt01cx_0292) from clostridium novyi nt at 2.35 a3 resolution 32 c2decA_ not modelled 98.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:325aa long hypothetical protein; PDBTitle: crystal structure of the ph0510 protein from pyrococcus horikoshii ot3 33 d1moqa_ not modelled 98.4 12 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 34 c2amlB_ not modelled 98.1 12 PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution 35 c1jxaA_ not modelled 98.0 13 PDB header:transferase Chain: A: PDB Molecule:glucosamine 6-phosphate synthase; PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate 36 c3tbfA_ not modelled 98.0 11 PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate aminotransferase PDBTitle: c-terminal domain of glucosamine-fructose-6-phosphate aminotransferase2 from francisella tularensis. 37 d1x92a_ not modelled 97.9 13 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 38 c3shoA_ not modelled 97.5 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 39 d1tk9a_ not modelled 97.4 14 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 40 c2yvaB_ not modelled 97.3 11 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 41 d1x94a_ not modelled 97.3 17 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 42 d1vima_ not modelled 97.3 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 43 c1nriA_ not modelled 97.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 44 d1nria_ not modelled 97.2 19 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 45 d1m3sa_ not modelled 97.1 22 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 46 c2x3yA_ not modelled 97.1 18 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 47 c3fxaA_ not modelled 97.0 16 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 48 c3etnD_ not modelled 96.9 17 PDB header:isomerase Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution 49 d1jeoa_ not modelled 96.8 21 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 50 c3cvjB_ not modelled 96.8 15 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 51 c2xhzC_ not modelled 96.5 14 PDB header:isomerase Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography 52 c3trjC_ not modelled 96.5 16 PDB header:isomerase Chain: C: PDB Molecule:phosphoheptose isomerase; PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis 53 d1p3da1 not modelled 86.6 20 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 54 d1chda_ not modelled 84.3 13 Fold:Methylesterase CheB, C-terminal domain Superfamily:Methylesterase CheB, C-terminal domain Family:Methylesterase CheB, C-terminal domain 55 c3sftA_ not modelled 77.0 13 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of thermotoga maritima cheb methylesterase catalytic2 domain 56 d1p17b_ not modelled 68.3 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 57 d1w5fa1 not modelled 65.8 28 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 58 d1q2la3 not modelled 64.5 16 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 59 d1zbsa2 not modelled 61.1 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 60 c3ezxA_ not modelled 58.6 15 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 61 c3ca8B_ not modelled 51.5 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 62 c2eklA_ not modelled 51.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: structure of st1218 protein from sulfolobus tokodaii 63 c2r6r1_ not modelled 49.7 29 PDB header:cell cycle Chain: 1: PDB Molecule:cell division protein ftsz; PDBTitle: aquifex aeolicus ftsz 64 d1liua3 not modelled 48.5 14 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 65 d1j99a_ not modelled 38.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 66 d1q20a_ not modelled 37.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 67 c1w59B_ not modelled 37.1 16 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 68 d1k75a_ not modelled 36.9 22 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 69 c2rhoB_ not modelled 36.4 20 PDB header:cell cycle Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s 70 c1zd1B_ not modelled 36.3 14 PDB header:transferase Chain: B: PDB Molecule:sulfotransferase 4a1; PDBTitle: human sulfortransferase sult4a1 71 c1a2oB_ not modelled 35.5 13 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 72 d1e0ta3 not modelled 35.2 15 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 73 c3d3qB_ not modelled 31.8 18 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 74 c2h8kA_ not modelled 30.2 19 PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap 75 c2y0fD_ not modelled 30.1 19 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 76 d1rq2a1 not modelled 30.1 24 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 77 d1a3xa3 not modelled 29.6 14 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 78 c1w5fA_ not modelled 28.6 28 PDB header:cell division Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima) 79 d1hgxa_ not modelled 28.5 8 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 80 d1aqua_ not modelled 28.2 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 81 d2vapa1 not modelled 27.7 17 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 82 d1o82a_ not modelled 27.3 41 Fold:Saposin-like Superfamily:Bacteriocin AS-48 Family:Bacteriocin AS-48 83 c2vxyA_ not modelled 26.8 26 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution 84 d1yqea1 not modelled 26.2 16 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 85 d2g50a3 not modelled 26.0 9 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 86 c3eplA_ not modelled 23.5 19 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 87 d1tc1a_ not modelled 22.8 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 88 c2jkzB_ not modelled 22.4 18 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form) 89 c2f00A_ not modelled 22.3 11 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc 90 d1q44a_ not modelled 20.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 91 d1j6ua1 not modelled 20.3 17 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 92 c3louB_ not modelled 20.0 9 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 93 c3nrbD_ not modelled 19.9 10 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 94 c3l76B_ not modelled 19.9 26 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 95 d1xrsb1 not modelled 19.6 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 96 d1t57a_ not modelled 19.3 18 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 97 d2gv8a2 not modelled 18.6 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 98 d2ahua2 not modelled 18.6 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 99 c3n0vD_ not modelled 18.4 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0